New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4383937 =	72 (1.870)	5 (0.140)	4/298	NT	6.2%	coding (55/1548 nt)	nnr	bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase
	?	CP009273	4384053 =	82 (2.250)					coding (171/1548 nt)	nnr	bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase

TGCTTCGCGTGCCAGCGCGGCCTCTTCCGGCAACGGTTTGTCGCTCTCCTGGGCCAACAACGTGACCTCAATGCCGACCGCTTTGGCCAGTCGCGCGACCACGTAGCCATCGCCGCCGTTATTACCATGACCGCACAGCACCAGCCAGTGGCGGGCGTCAGGATACGCCGAACGACACACCTGGAATGCGGCCTCGCCAGCGCGAAGCATCAGCTCATAGAGTGTGAGCCCCAGCACATCTGCCGCCTCGCGTTCTCCGCGGCGGATATCGTCGGCGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4384215‑4383937 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcgtaTCCTGACGCCCGCCACTGGCTGGTGCTGTGCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGCTGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGA  >  CP009273/4384053‑4384237                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGCTTCGCGTGCCAGCGCGGCCTCTTCCGGCAACGGTTTGTCGCTCTCCTGGGCCAACAACGTGACCTCAATGCCGACCGCTTTGGCCAGTCGCGCGACCACGTAGCCATCGCCGCCGTTATTACCATGACCGCACAGCACCAGCCAGTGGCGGGCGTCAGGATACGCCGAACGACACACCTGGAATGCGGCCTCGCCAGCGCGAAGCATCAGCTCATAGAGTGTGAGCCCCAGCACATCTGCCGCCTCGCGTTCTCCGCGGCGGATATCGTCGG                                                                                                                                                                                               >  1:97723/1‑275      CGCGTGCCAGCGCGGCCTCTTCCGGCAACGGTTTGTCGCTCTCCTGGGCCAACAACGTGACCTCAATGCCGACCGCTTTGGCCAGTCGCGCGACCACGTAGCCATCGCCGCCGTTATTACCATGACCGCACAGCACCAGCCAGTGGCGGGCGACAGGATACGCCGAACGACACACCTGGAATGCGGCCTCGCCAGCGCGAAGCATCAGCTCATAGAGTGTGAGCCCCAACACAACTGCCGCCCCGCGTTCCCCGCGGCGGAAATCGGCGGCGgac                                                                                                                                                                                          >  1:628080/1‑272                                                                                                                                                           GCGTCAGGATACGCCGAACGACACACCTGGAATGCGGCCTCGCCAGCGCGAAGCATCAGCTCATAGAGTGTGAGCCCCAGCACATCTGCCGCCTCGCGTTCTCCGCGGCGGATATCGTCGGCGTA                                                                                                                                                                                           >  1:368944/1‑125                                                                                                                                                                                      TGGAATGCGGCCTCGCCAGCGCGAAGCATCAGCTCATAGAGTGTGAGCCCCAGCACATCTGCCGCCTCGCGTTCTCCGCGGCGGATATCGTCGGCGTATCCTGTCGCCCGCCACTGGCTGGTGCTGTGCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGCTGGCACGCGAAGCATGGTTAAACGCGG           <  1:456820/274‑1                                                                                                                                                                                             CGGCCTCGCCAGCGCGAAGCATCAGCTCATAGAGTGTGAGCCCCAGCACATCTGCCGCCTCGCGTTCTCCGCGGCGGATATCGTCGGCGTATCCTGACGCCCGCCACTGGCTGGTGCTGTGCGGTCATGGTAATAACGGCGGCGATGGCTACGT                                                                                                                            >  1:521998/1‑154                                                                                                                                                                                               GCCTCGCCAGCGCGAAGCATCAGCTCATAGAGTGTGAGCCCCAGCACATCTGCCGCCTCGCGTTCTCCGCGGCGGATATCGTCGGCGTATCCTGACGCCCGCCACTGGCTGGTGCTGTGCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTGGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGACNCGGCCGCGCGGGCACGCGAAAGAGTGTTAAACGCGttggtccgtt  >  2:456813/1‑264                                                                                                                                                                                               GCCTCGCCAGCGCGAACCATCAGCTCATAGAGTGTGAGCCCCAGCACATCTGCCGCCTCGCGTTCTCCGCGGCGGATATCGTCGGCGTATCCTGACGCCCGCCACTGGCTGGTGCTGTGCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTNAGGTCACGTTGTTGGCCCAGGAGAGCGACA                                                              >  1:535316/1‑214                                                                                                                                                                                                 ctgGCCAGCGCGAAGCATCAGCTCATAGAGTGTGAGCCCCAGCACATCTGCCGCCTCGCGTTCTCCGCGGCGGATATCGTCGGCGTATCCTGACGCCCGCCACTGGCTGGTGCTGTGCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTC                                                                                                                        <  2:521991/151‑1                                                                                                                                                                                                                                                                                TCGGCGTATCCTGACGCCCGCCACTGGCTGGTGCTGTGCGGTCATGGTAATAACGGCGGC                                                                                                                                       <  2:50774/60‑1                                                                                                                                                                                                                                                                                TCGGCGTATCCTGACGCCCGCCACTGGCTGGTGCTGTGCGGT                                                                                                                                                         <  1:144634/42‑1                                                                                                                                                                                                                                                                                      TATCCTGACGCCCGCCACTGGCTGGTGCTGTGCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTC                                                                                                   >  1:360505/1‑90                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGCTTCGCGTGCCAGCGCGGCCTCTTCCGGCAACGGTTTGTCGCTCTCCTGGGCCAACAACGTGACCTCAATGCCGACCGCTTTGGCCAGTCGCGCGACCACGTAGCCATCGCCGCCGTTATTACCATGACCGCACAGCACCAGCCAGTGGCGGGCGTCAGGATACGCCGAACGACACACCTGGAATGCGGCCTCGCCAGCGCGAAGCATCAGCTCATAGAGTGTGAGCCCCAGCACATCTGCCGCCTCGCGTTCTCCGCGGCGGATATCGTCGGCGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4384215‑4383937 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcgtaTCCTGACGCCCGCCACTGGCTGGTGCTGTGCGGTCATGGTAATAACGGCGGCGATGGCTACGTGGTCGCGCGACTGGCCAAAGCGGTCGGCATTGAGGTCACGTTGTTGGCCCAGGAGAGCGACAAACCGTTGCCGGAAGAGGCCGCGCTGGCACGCGAAGCATGGTTAAACGCGGGTGGCGAGA  >  CP009273/4384053‑4384237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.