| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4393089 | 63 (1.640) | 4 (0.110) | 4/294 | NT | 6.5% | coding (1235/1260 nt) | hflK | modulator for HflB protease specific for phage lambda cII repressor |
| ? | CP009273 | = 4393204 | 57 (1.580) | coding (88/1005 nt) | hflC | modulator for HflB protease specific for phage lambda cII repressor | |||||
CGCCGGAAATTACTCGCGAGCGTCTGTATATCGAGACGATGGAAAAAGTGTTGGGTAACACCCGCAAAGTGCTGGTTAACGATAAAGGTGGCAACCTGATGGTTCTGCCGTTAGACCAGATGCTGAAAGGTGGTAACGCCCCTGCGGCGAAGAGCGATAACGGTGCCAGCAATCTGCTGCGTCTGCCGCCAGCCTCTTCCTCCACAACCAGTGGAGCAAGCAACACGTCGTCCACCAGTCAGGGCGATATTATGGACCAACGCCGCGCCAACGCGCAGCGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4392807‑4393089‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagcgtaaTACCGCGCTCACCTTCTTTGACGACAAAGACAGACATGTAAAGCACTACCAGCACGATGATGATAATCGCGATAACTGACTTACGCATCGTTATTCCCCCTGACGCTGGTAGTCGTTACGCTGCGCGTTGGCGCGGCGTTGGTCCATAATATCGCCCTGACTGGTGGACGACGTGTTGCTTG < CP009273/4393204‑4393023 aGCCGGAATGTACGCGCGAGCGTGTGTATATGGAGACGATGGAAAAAGGGTTGGGGAACACCCGCAAAGTGCTGGTTAACGATAAAGGGGGCAACCTGATGGTTCTGCCGTTAGACCAGATGCTGAAAGGTGGTAACGCCCCTGCGGCGAAGAGCGATAACGGTGCCAGCAATCTGCTGCGTCTGCCGCCAGCCTCTTCCTCCACAACCAGTGGAGCAAGCAACACGTCGTCCACCAGTCAGGGCGATATTATGGACCAACGCCGCGCCAACGCG < 2:714059/274‑1 CGGAAATTACTCGCGGGCGTCTGTATATCGAGACGATGGAAAAAGTGTTGGGTAACACCCGCAAAGTGCTGGTTAACGATAAAGGTGGCAACCTGATGGTTCTGCCGTTAGACCAGATGNTGAAAGGTGGTAACGCCCCTGCGGCGAAGAGCGATAACGGTGCCAGCAATCTGCTGCGTCTGCCGCCAGCCTCTTCCTCCACAACCAGTGGAGCAAGCAACACGTCGTCCACCAGTCAGGGCGATATTATGGACCAACGCCGCGCCAACGCG < 1:607474/272‑1 GAAATTACTCGCGAGCGTCTGTATATCGAGACGATGGAAAAAGTGTTGGGTAACACCCGCAAAGTGCTGGTTAACGATAAAGGTGGCAACCTGATGGTTCTGCCGTTAGACCAGATGCTGAANGGTGGTCACGCCCCTGCGGCGAAGAGCGATAACGGTGCCAGCAATCTGCTGCGTCTGCCGCCAGCCTCTTCCTCCACAACCAGTGGAGCAAGCAACACGTCGTCCACCAGTCAGGGCGATATTATGGACCAACGCCGCGCCAACGCGCAGCG < 1:604366/275‑1 AAGGTGGCAACCTGATGGTTCTGCCGTTAGACCAGATGCTGAAAGGTGGTAACGCCCCTGCGGCGAAGAGCGATAACGGTGCCAGCAATCTGCTGCGTCTGCCGCCAGCCTCTTCCTCCACAACCAGTGGAGCAAGCAACACGTCGTCCACCAGTCAGGGCGATATTATGGACCAACGCCGCGCCAACGCGCAGCGTAATACCGCGCTCACCTTCTTTGACGACACAGACAGCCATGTAAAGCACTACCCCCACCATGATGCAAATCGCAATAAC > 2:700530/1‑275 CTGCCGTTAGACCAGATGCTGAAAGGTGGTAACGCCCCGGCGGCGAAGAGCGATAACGGTGCCAGCAATCTGCTGCGTCTGCCGCCAGCCTCTTCCTCCACAACCAGTGGAGCAAGCAACACGTCGTCCACCAGTCAGGGCGATATTATGGACCAACGCCGCGCCAACGCGCAGCGTAATACCGCGCTCACCTTCTTTGACGACAAAGACAGACATGTAAAGCACTACCAGCACGATGATGATAATCGCGATAACTGACTTACGCATCGTTATT < 1:700539/274‑1 AGGTGGTAACGCCCCTGCGGCGAAGAGCGATAACGGTGCCAGCAATCTGCTGCGTCTGCCGCCAGCCTCTTCCTCCACAACCAGTGGAGCAAGCAACACGTCGTCCACCAGTCAGGGCGATATTATGGACCAACGCCGCGCCAACGCG < 2:577022/148‑1 ATCTGCTGCGTCTGCCGCCAGCCTCTTCCTCCACAACCAGTGGAGCAAGCAACACGTCGTCCACCAGTCAGGGCGATATTATGGACCAACGCCGCGCCAACGCGC > 2:686940/1‑105 GCTGCGTCTGCCGCCAGCCTCTTCCTCCACAACCAGTGGAGCAAGCAACACGTCGTCCACCAGTCAGGGCGATATTATGGACCAACGCCGCGCCAACGCGCAGCG < 1:686949/105‑1 CTCCACAACCAGTGGAGCAAGCAACACGTCGTCCACCAGTCAGGGCGATATTATGGACCAACGCCGCGCCAACGCG < 2:439389/76‑1 ACCAGTGGAGCAAGCAACACGTCGTCCACCAGTCAGGGCGATATTATGGACCAACGCCGCGCCAACGCG < 1:178146/69‑1 AGCAAGCAACACGTCGTCCACCAGTCAGGGCGATATTATGGACCAACGCCGCGCCAACGC < 2:583704/60‑1 ACCAGTCAGGGCGATATTATGGACCAACGCCGCGCCAACGCGCAGCGTAATACCGCGCTCACCTTCTTTGACGACAAAGAC > 1:409143/1‑81 GTCAGGGCGATATTATGGACCAACGCCGCGCCAACGCGCAGCGTAATACCGCGCTCACCTTCTTTGACGACAAAGACAGAC < 2:409136/81‑1 CAGCGTAATACCGCGCTCACCTTCTTTGACGACAAAGACAGAC > 1:70132/1‑43 GCGTAATACCGCGCTCACCTTCTTTGACGACAAAGACAGACATGTAAAGCACTACCAGCACGATGATGATAATCGCGATAACTGACTTACGCATCGTTATTCCCCCTGACGCTGGTAGTCGTTACGCTGCGCGTTGGCGCG > 1:166488/1‑141 CGTAATACCGCGCTCACCTTCTTTGACGACAAAGACAGACATGTAAAGCACTACCAGCACGATGATGATAATCGCGATAACTGACTTACGCATCGTTATTCCCCCTGACGCTGGTAGTCGTTACGCTGCGCGTTGGCGCGGCGTTGGTCCATAATATCGCCCTGACTGGTGGACGACGTGTTG > 2:684481/1‑183 GTAATACCGCGCTCACCTTCTTTGACGACAAAGACAGACATGT < 2:70131/43‑1 AATACCGCGCTCACCTTCTTTGACGACAAAGACAGACATGTAAAGCACTACCAGCACGATGATGATAATCGCGATAACTGACTTACGCATCGTTATTCCCCCTGACGCTGGTAGTCGTTACGCTGCGCGTTGGCGCGGCGT < 2:166485/141‑1 ATACCGCGCTCACCTTCTTTGACGACAAAGACAGACATGTAAAGCACTACCAGCACGATGATGATAATCGCGATAACTGACTTACGCATCGTTATTCCCCCTGACGCTGGTAGTCGTTACGCTGCGCGTTGGCGCGGCGTTGGTCCATAATATCGCCCTGACTGGTGGACGACGTGTTGCTTG < 1:684490/183‑1 CGCCGGAAATTACTCGCGAGCGTCTGTATATCGAGACGATGGAAAAAGTGTTGGGTAACACCCGCAAAGTGCTGGTTAACGATAAAGGTGGCAACCTGATGGTTCTGCCGTTAGACCAGATGCTGAAAGGTGGTAACGCCCCTGCGGCGAAGAGCGATAACGGTGCCAGCAATCTGCTGCGTCTGCCGCCAGCCTCTTCCTCCACAACCAGTGGAGCAAGCAACACGTCGTCCACCAGTCAGGGCGATATTATGGACCAACGCCGCGCCAACGCGCAGCGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4392807‑4393089‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagcgtaaTACCGCGCTCACCTTCTTTGACGACAAAGACAGACATGTAAAGCACTACCAGCACGATGATGATAATCGCGATAACTGACTTACGCATCGTTATTCCCCCTGACGCTGGTAGTCGTTACGCTGCGCGTTGGCGCGGCGTTGGTCCATAATATCGCCCTGACTGGTGGACGACGTGTTGCTTG < CP009273/4393204‑4393023 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |