| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4437215 | 56 (1.460) | 8 (0.220) | 5/294 | NT | 11.8% | coding (3287/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit |
| ? | CP009273 | = 4437296 | 67 (1.860) | coding (3368/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit | |||||
GTGGTGATGCTTAACGATAACCTGCAACCGGAAGAGCCGAAAACGGCGTCGATTCCGATTAACAGTAACCTGATTGTCCACGTTGGCAACAATGTGCGCATTGACGCCTTTGGCCTGAAAGCGCGGCTGACGGGCGATCTCAATGTCGTTCAGGACAAACAAGGGCTGGGTCTGAACGGGCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4436947‑4437215‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccgccagaCCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGCGGACCAGAGAACAGTAACTCACCTTTACGCACAATCAGATCCTGACCATAGGCATGGAAGCGCCCTTCAGGGATGTTGATCTGCCCGTTCAGACCCAGCCCTTGTTTGTCCTGAACGACATTGAGATCGCCCGTCAGCCGCGCTTTCAGGCCAAAGGCGTCAATGCGCACATTGTTGCCAA < CP009273/4437296‑4437029 GTGGTGATGCTTAACGATAACCTGCAACCGGAAGAGCCGAAAACGGCGTCGATTCCGATTAACAGTAACCTGATTGTCCACGTTGGCAACAATGTGCGCATTGACGCCTTTGGCCTGAAAGCGCGGCTGACGGGCGATCTCAATGTCGTTCAGGACAAACAAGGGCTGGGTCTGAACGGGCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGT > 1:425711/1‑261GTGGTGATGCTTAACGATAACCTGCAACCGGAAGAGCAGAAAACGGCGTCGATTCCGATTAACAGTAACCTGATTGTCCACGTTGGCCACAATGTGCGCATTGACGCCTTTGGCCTGAAAGCGCGGCTGACGGGCGATCTCAATGTCGTTCAGGACAAACAAGGGCTGGGTCTGAACGGGCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGC < 1:360845/265‑1 gcatggttggcagCGTGGGCAACCGTGTGCGCATTGACGCCTTTGGCCTGAAAGCGCGGCTGACGGGCGATCTCAATGTCGTTCAGGACAAACGAGGGCTGTGTCTGAACGGGCAGATCAACATCCCTGAAGGGCGCTTCCAGGCCTATGGTCAGGATCTGATTGTGCGTAAATGTGAGTTACTGTTCTCTGGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGA < 2:108833/261‑1 ATTGTCCACGTTGGCAACAATGTGCGCATTGACGCCTTTGGCCTGAAAGCGCGGCTGACGGGCGATCTCAATGTCGTTCAGGACAAACAAGGGCTGGGTCTGAACGGGCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGT > 1:384841/1‑189 TCCACGTTGGCAACAATGTGCGCATTGACGCCTTTGGCCTGAAAGCGCGGCTGACGGGCGATCTCAATGTCGTTCAGGACAAACAAGGGCTGGGTCTGAACGGGCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGC < 2:384835/189‑1 CCACGTTGGCAACAATGTGCGCATTGACGCCTTTGGCCTGAAAGCGCGGCTGACGGGCGATCTCAATGTCGTTCAGGACAAACAAGGGCTGGGTCTGAACGGGCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGACCAGTGACGCGAACTCCGGCGGTGACGTCGTCTTCTGTAGCCTCGGGGTAACGAATAGCTGCAATATTAAGATACGGTTGca > 1:108834/1‑272 GGGCGATCTCAATGTCGTTCAGGACAAACAAGGGCTGGGTCTGAACGGGCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATT > 2:649562/1‑206 GATCTCAATGTCGTTCAGGACAAACAAGGGCTGGGTCTGAACGGGCAGATCAACATCCCCGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGA < 1:649571/206‑1 TTCAGGACAAACAAGGGCTGGGTCTGAACGGGCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGG > 2:582320/1‑112 GGACAAACAAGGGCTGGGTCTGAACGGGCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCG < 1:582329/112‑1 AACAAGGGCTGGGTCTGAACGGGCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCC < 2:539801/106‑1 GATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATT > 2:400877/1‑115 TGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGA < 1:400884/115‑1 GATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCC > 2:102570/1‑39 TGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATT > 1:133907/1‑105 TAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGA < 2:133906/105‑1 ccgAGACCNGTGCCGCGAGCTACGGCGATTACGTCGTTTTCTGTAGCGTCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGCGGACAAGAGAACAGTAACTCACCTTTACGCACAATCAGATCCTGACCATAGGCACGGAAGCGCCCTTCAGGGATGTTGATCTGCCCGTTCAGACCCAGCCCTTGTTTGTCCTGAACGACATTGAGATCGCCCGTCAGCCGCGCTTTCAGGCCAAAGGCGTCAATACGCACATTGTTGCCAA < 2:262489/271‑1 GTGGTGATGCTTAACGATAACCTGCAACCGGAAGAGCCGAAAACGGCGTCGATTCCGATTAACAGTAACCTGATTGTCCACGTTGGCAACAATGTGCGCATTGACGCCTTTGGCCTGAAAGCGCGGCTGACGGGCGATCTCAATGTCGTTCAGGACAAACAAGGGCTGGGTCTGAACGGGCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4436947‑4437215‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccgccagaCCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGCGGACCAGAGAACAGTAACTCACCTTTACGCACAATCAGATCCTGACCATAGGCATGGAAGCGCCCTTCAGGGATGTTGATCTGCCCGTTCAGACCCAGCCCTTGTTTGTCCTGAACGACATTGAGATCGCCCGTCAGCCGCGCTTTCAGGCCAAAGGCGTCAATGCGCACATTGTTGCCAA < CP009273/4437296‑4437029 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |