New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4496896	79 (2.060)	10 (0.270)	9/300	NT	10.6%	pseudogene (219/249 nt)	yjhE	pseudogene, KpLE2 phage‑like element
	?	CP009273	= 4497160	93 (2.530)					pseudogene (147/255 nt)	insO	pseudogene, IS911 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related

GCTGTCCCGATGGATATTACGCCGAAGTATGTGGGAATTGCCAGCGGATTGATGAACGCCGGTTCCGCTGTCGCCGACATTATTTCACCTATCGCCTTTGGCATTATTATCGACAAAACAGGCAACTGGAGTTTACCATTCTACGGTTCCGTCGCATTGCTTGTTATTGGTATATT‑‑CCTGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4496714‑4496896 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgacgCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTCGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGAAATTTCTTTTTTTCATTGGAGCACCTGTGTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACTTCAGCCCTGATTCGACTTTTACAATGACTTATCTGGACGCATGAAGAACGTC  <  CP009273/4497160‑4496893                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCTGTCCCGATGGATATTACGCCGAAGTATGTGGGAATTGCCAGCGGATTGATGAACGCCGGTTCCGCTGTCGCCGACATTATTTCACCTATCGCCTTTGGCATTATTATCGACAAAACAGGCAACTGGAGTTTACCATTCTACGGTTCCGTCGCATTGCTTGTTATTGGTATATT‑‑C                                                                                                                                                                                                                                                                                    >  1:256930/1‑177     TCCCGATGGATATTACGCCGAAGTATGTGGGAATTGCCAGCGGATTGATGAACGCCGGTTCCGCTGTCGCCGACATTATTTCACCTATCGCCTTTGGCATTATTATCGACAAAACAGGCAACTGGAGTTTACCATTCTACGGTTCCGTCGCATTGCTTGTTATTGGTATATT‑‑CCTGA                                                                                                                                                                                                                                                                                <  2:256925/177‑1                         AAGTATGTGGGAATTGCCAGCGGATTGATGAACGCCGGTTCCGCTGTCGCCGACATTATTTCACCTATCGCCTTTGGCATTATTATCGACAAAACAGGCAACTGGAGTTTACCATTCTACGGTTCCGTCGCATTGCTTGTTATTGGTATATT‑‑C                                                                                                                                                                                                                                                                                    >  2:655949/1‑153                             ATGTGGGAATTGCCAGCGGATTGATGAACGCCGGTTCCGCTGTCGCCGACATTATTTCACCTATCGCCTTTGGCATTATTATCGACAAAACAGGCAACTGGAGTTTACCATTCTACGGTTCCGTCGCATTGCTTGTTATTGGTATATT‑‑CCTGA                                                                                                                                                                                                                                                                                <  1:655958/153‑1                                                        ACGCCGGTTCCGCTGTCGCCGACATTATTTCACCTATCGCCTTTGGCATTATTATCGACAAAACAGGCAACTGGAGTTTACCATTCGACGGTTAAGAGGCATTGCTTGTTATTGGTATATT‑‑CCTGACGCTCATCACTCATGTGTTTAACCCATCTTGTCATTGTGGTAAGGCCAACATCCATAGCTTTCGCGGCATCTGCCACCGTGTCTTTCTGGTCAATAACCAGTTGAGCGCATTCGCCTTTACACTCTGCGCCGAAATTTCTTTTTTTCct                                                                                                                           >  1:206601/1‑273                                                          GCCGGTTCCGCTGTCGCCGACATTATTTCACCTATCGCCTTTGGCATTATTATCGACAAAACAGGCAACTGGAGTTTACCATTCTACGGTTCCGTCGCATTGCTTGTTATTGGTATATT‑‑CCTGACGCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTCGCGGCATCTGCCCCCTTGTATTTCTGGTCAACAACCAGTTGAGTGGATTCGCGTTTAAACTCTGCTCTGAATTTTCTTgctcctctct                                                                                                                         >  2:104660/1‑265                                                          GCCGGTTCCGCTGTCGCCGACATTATTTCACCTATCGCCTTTGGCATTATTATCGACAAAACAGGCAACTGGAGTTTACCATTCTACGGTTCCGTCGCATTGCTTGTTATTGGTATATT‑‑CCTGACGCTCATCACGCAGGTGTT                                                                                                                                                                                                                                                             >  2:536680/1‑143                                                              GTTCCGCTGTCGCCGACATTATTTCACCTATCGCCTTTGGCATTATTATCGACAAAACAGGCAACTGGAGTTTACCATTCTACGGTTCCGTCGCATTGGTTGTTATTGGTATATG‑‑CCTGACGCTCATCACGCAGTTGTTTGAC                                                                                                                                                                                                                                                         <  1:536688/143‑1                                                                   cagGTCGCCGACATTATTTCACCTATCGCCTTTGGCATTATTATCGACAAAACAGGCAACTGGAGTTTACCATTCTACGGTTCCGTCGCATTGCTTATTATTGGTATATT‑‑CCTGACGCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTCGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGAAATTTCTTTTTTTCATTGGAGCACCT                                                                                                                 <  1:373382/271‑1                                                                                 ttTTTCACCTATCGCCTTTGGCATTATTATCGACAAAACAGGCAACTGGAGTTTACCATTCTACGGTTCCGTCGCATTGCTTGTTATTGGTATATT‑‑CCTGACGTTCTTCATGC‑‑‑‑GT‑‑‑CCAGAT‑AAGTCATTGTGGAAAGGCCAACATCCATAGCTTTCGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGAAATTTCTTTTTTTCATTGGAGCACCTGTGTTGTTCTGAGGTGAGCATAT                                                                                          <  1:457162/273‑1                                                                                 TATTTCACCTATCGCCTTTGGCATTATTATCGACAAAACAGGCAACTGGAGTTTACCATTCTACGGTTCCGTCGCATTGCTTGTTATTGGTATATT‑‑CCTGACGCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTCGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGAAATTTCTTTTTTTCGTTTGAGCACCTGGTTTGTTCTtgt                                                                                                    >  2:502664/1‑270                                                                                     TCACCTATCGCCTTTGGCATTATTATCGACAAAACAGGCAACTGGAGTTTACCATTCTACGGTTCCGTCGCATTGNTTGTTATTGGTATATT‑‑CCTGACGCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTCGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGTAATTTGTTTTTTTCATTGGAGCACCTGTG                                                                                                              <  1:502671/259‑1                                                                                                                                         CATTCTACGGTTCCGTCGCATTGCTTGTTATTGGTATATT‑‑CCTGACGCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTCGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGAAATTTCTTTTTTTCATTGGAGCACCTGTGTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACTTCAGCCCTGAT                                           <  1:104661/274‑1                                                                                                                                            TCTACGGTTCCGTCGCATTGCTTGTTATTGGTGTTTTGCCCTGACGCTCATCACGCAGTGGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTCGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGAAATTTCTTTTGTTCATTGGAGCACCTGTGTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACTTCAGCCCTGATTC                                         <  1:148987/275‑1                                                                                                                                                                                   CCTGACGCTCATCACGTAGTTGTTTGTCCCATCTTTTCATTGTGGAAAGGCCAACATCCATAGCTTTCGCTGCATCTGCCACCGTGTAGTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTGAACTCTGCGCTGAAATTTCTTTTTTTCATTGGAGCACCTGTGTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACTTCAGCCCTGATTCGACTTTTCCAATGACTTATATGGACGCATGAAGAACGTC  <  1:593086/275‑1                                                                                                                                                                                   CCTGACGCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTCGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGAAATTTCTTTTTTTCATTGGAGCACCTGTGTTGTTCT                                                                                                       <  1:262632/174‑1                                                                                                                                                                                   CCTGACGCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTCGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGAAATTTCTTTTTTTCATTGGAGCACCT                                                                                                                 <  2:343890/164‑1                                                                                                                                                                                   CCTGACGCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTCGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGANTCGCGTTTAATCTCTGCGCTGAAATTTCTTTTTTTCATTGGAGCACCTGTGTTGTTCTGAGGTGAACATATCACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACTTCAGCCCTGATTCGACTTTTACAATGACTTATCTGGACGCATGAAGAACGT   <  1:654000/274‑1                                                                                                                                                                                     TGACGCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTCGCGGCATCTGCCACCGTGTAT                                                                                                                                                                                            >  1:203442/1‑87                                                                                                                                                                                         GCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTCGCGGCATCTGCCACCGTGTATTTCT                                                                                                                                                                                        <  2:203438/87‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCTGTCCCGATGGATATTACGCCGAAGTATGTGGGAATTGCCAGCGGATTGATGAACGCCGGTTCCGCTGTCGCCGACATTATTTCACCTATCGCCTTTGGCATTATTATCGACAAAACAGGCAACTGGAGTTTACCATTCTACGGTTCCGTCGCATTGCTTGTTATTGGTATATT‑‑CCTGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4496714‑4496896 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgacgCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTCGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGAAATTTCTTTTTTTCATTGGAGCACCTGTGTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACTTCAGCCCTGATTCGACTTTTACAATGACTTATCTGGACGCATGAAGAACGTC  <  CP009273/4497160‑4496893

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.