New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	6433 =	73 (1.900)	8 (0.220)	5/296	NT	10.7%	coding (27/777 nt)	yaaA	peroxide resistance protein, lowers intracellular iron
	?	CP009273	6543 =	65 (1.790)					coding (1417/1431 nt)	yaaJ	putative transporter

TCCGGATATCGGTCGCCAGCTTTCTCCGGACGCGTGGGATGATGTTTCGCAGGAGTAATCACAACTATCGATCAACTCATTCTCATTTTTTGCTAAAGTCGGCATAAATTTCCTGCAAGGACTGGATATGCTGATTCTTATTTCACCTGCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/6586‑6433 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcgaaaCATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGGCGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCGGTCAAATTGGTAATAGCCATGCAGGCCATTATGATATCTGCCAGTTGCCACATCAGCGGAAGGCTTAGCAAGGTGCCGCCGATGACCGTTGCGAAGGTGCAGATCCGCAAACACCAGATCGCTTTAG  >  CP009273/6543‑6812                                                                                                                                                                                                                                                                                                                                                                                                                                          TCCGGATATCGGTCGCCAGCTTTCTCCGGACGCGTGGGATGATGTTTCGCAGGAGTAATCACAACTATCGATCAACTCATTCTCATTTTTTGCTAAAGTCGGCATAAATTTCCTGCAAGGACTGGATATGCTGATTCTTATTTCACCTGCGAAA                                                                                                                                                                                                                                                                                >  2:233539/1‑154                                       gtattagagaaagGGAGTAATTANATCTGTCTATCAACTCATTCTTATTTTTTTCTAAAGTCTGCATAAATTTCCTGCAAGGACTGGATATGATGATTCTTATTTCACCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGGCGCACGCCGAGTTTACGCTGGCGTAGATAATCCCTGGCAATGGTATGAAACACAGGCGAGAGCAGTAAAATGGCGGTCAAATTGGTAATA                                                                                                                  <  2:421721/261‑1                                                               AACTATCGATCAACTCATTCTCATTTTTTGCTAAAGTCGGCATAAATTTCCTGCAAGGACTGGATATGCTGATTCTTATTTCACCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGGCGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCGGTCACATTGGTAATAGCCATGCAGGCCtgactcttatac                                                                                          >  1:421728/1‑262                                                               AACTATCGATCAACTCATTCTCATTTTTTGCTAAAGTCGGCATAAATTTCCTGCAAGGACTGGATATGCTGATTCTTATTTCACCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAA                                                                                                                                                                                                                                 >  1:400938/1‑139                                                               AACTATCGATCAACTCATTCTCATTTTTTGCTAAAGTCGGCATAAATTTCCTGCAAGGACTGGATATGCTGATTCTTATTTCACCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGG                                                                                                                                                                                                                                     >  2:111681/1‑135                                                               AACTATCGATCAACTCATTCTCATTTTTTGCTAAAGTCGGCATAAATTTCCTGCAAGGACTGGATATGCTGATTCTTATTTCACCTGCGAAACATCATCCCACGCGTCCAGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGGCGCACGCCGAGTTTACG                                                                                                                                                                                           >  1:317390/1‑177                                                                   ATCGATCAACTCATTCTCATTTTTTGCTAAAGTCGGCATAAATTTCCTGCAAGGACTGGATATGCTGATTCTTATTTCACCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCA                                                                                                                                                                                                                             <  2:400931/139‑1                                                                   ATCGATCAACTCATTCTCATTTTTTGCTAAAGTCGGCATAAATTTCCTGCAAGGACTGGATATGCTGATTCTTATTTCACCTGCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAA                                                                                                                                                                                                                                 <  1:111682/135‑1                                                                   ATCGATCAACTCATTCTCATTTTTTGCTAAAGTCGGCATAAATTTCCTGCAAGGACTGGATATGCTGATTCTTATTTCACCTGCGAAACATCATCCCACGCGTCCAGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGGCGCACGCCGAGTTTACGCTGG                                                                                                                                                                                       <  2:317384/177‑1                                                                                                                                                CACCTGCGAAACATCATACCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGGCGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCGGTCAAATTGGTAATAGCCATGAAGGCCATTATGATATCTGCGAGTTGCC                                                                                >  1:696478/1‑203                                                                                                                                                     GCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGGCGCACGCCGAGTTTACG                                                                                                                                                                                           <  2:493250/91‑1                                                                                                                                                     GCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGA                                                                                                                                                                                                                                    <  2:419809/50‑1                                                                                                                                                     GCGAAACATCATCCCACGCGTCCGGAGAAAGCTGGC                                                                                                                                                                                                                                                  <  2:619123/36‑1                                                                                                                                                      CGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATCACGCAATGGATCAAACACCGGGCGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATG                                                                                                                                                                  >  2:328098/1‑115                                                                                                                                                      CGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGGCGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCGGTCAAATTGGTAATAGCCATGCAGGCCATTATGATATCTGCCAGTTGCCACATCAGCGGAAGGCTTAGCAAGGTGCCGCCGATGACCGTTGCGAAGGTGCAGATCag                      >  1:446590/1‑253                                                                                                                                                      CGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGGCGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCGGTCAAATTGGTAATAGCCATGCAGGCCATTATGATATCTGCCAGTTGCCACATCAGCGGAAGGCTTAGCAAGGTGCCGCCGATGACCGTTGCGAAGGTGCAGATCCGCAAACACAAGATCGCTTTAG  >  1:217752/1‑275                                                                                                                                                      CGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGGCGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAAT                                                                                                                                     >  2:609768/1‑144                                                                                                                                                      CGAAACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGGCGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGA                                                                                                                                                            >  1:420531/1‑121                                                                                                                                                          ACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGGCGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCG                                                                                                                                 <  1:609777/144‑1                                                                                                                                                          ACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGGCGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCA                                                                                                                                                        <  2:420524/121‑1                                                                                                                                                          ACATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGGCGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTAT                                                                                                                                                              <  1:328104/115‑1                                                                                                                                                                                                                                                                                                                                                                                                                                          TCCGGATATCGGTCGCCAGCTTTCTCCGGACGCGTGGGATGATGTTTCGCAGGAGTAATCACAACTATCGATCAACTCATTCTCATTTTTTGCTAAAGTCGGCATAAATTTCCTGCAAGGACTGGATATGCTGATTCTTATTTCACCTGCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/6586‑6433 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcgaaaCATCATCCCACGCGTCCGGAGAAAGCTGGCGACCGATATCCGGATAACGCAATGGATCAAACACCGGGCGCACGCCGAGTTTACGCTGGCGTAGATAATCACTGGCAATGGTATGAACCACAGGCGAGAGCAGTAAAATGGCGGTCAAATTGGTAATAGCCATGCAGGCCATTATGATATCTGCCAGTTGCCACATCAGCGGAAGGCTTAGCAAGGTGCCGCCGATGACCGTTGCGAAGGTGCAGATCCGCAAACACCAGATCGCTTTAG  >  CP009273/6543‑6812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.