New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	221066 =	1 (0.030)	13 (0.350)	7/302	NT	93.1%	noncoding (809/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon
	?	CP009273	= 2723620	NA (NA)					noncoding (897/1542 nt)	rrsG	16S ribosomal RNA of rrnG operon

ACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCCCCGGGCTCAACCTGGGAACTGCATCTGATACTGGCAAGCTTGAGTCTCGTAGAGGGGGGTAGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGGTGGCGAAGGCGGCCCCCTGGACGAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACATCCACAGAA  >  CP009273/220792‑221262                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                     ttatcactggcagtctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaacccaacatttcacaacacgagctgacgacagccatgcagcacctgtctcacggttcccgaaggcacattctcatctctgaaaacttccgtggatgtcaagaccaggtaaggttcttcgcgttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgg                                                                                                                                                                                                      >  1:269300‑M1/275‑275 (MQ=255)      aattgcagtcgccgttgagttcccggccggaccgctggcaacaaatgataagggttgcgctctttgcgtgacttaacccaacatttcacaacacgagctgacgacagccatgcagcacctgtctcacggttcccgaaggcacattctcatctctgaaaacttccgtggatgtcaagaccaggtaaggttcttcgcgttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCGTa                                                                                                                                                                                                 >  2:719399‑M1/270‑275 (MQ=255)        ggaaagtttttttttagttcccggtcggaccgctggcaacaaaggataagggttgccctcgttgcgggacttaccccaacatttcacaacacgagctgacgacagccatgcagcacctgtctcacggttcccgaaggcacattctcatctctgaaaacttccgtggatgtcaagaccaggtaaggttcttcgcgttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCGTa                                                                                                                                                                                                 >  2:571654‑M1/268‑273 (MQ=255)          gcagtctcctttgagttccgggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaacccaacatttcacaacacgagctgacgacagccatgcagcacctgtctcacggttcccgaaggcacattctcatctctgaaaacttccgtggatgtcaagaccaggtaaggttcttcgcgttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCGtaat                                                                                                                                                                                               <  1:571663‑M1/8‑2 (MQ=255)               ctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgggacttaacccaacatttcacaacacgagctgacgacagccatgcagcacctgtctcacggttcccgaaggcacattctcatctctgaaaacttccgtggatgtcaagaccaggtaaggttcttcgcgttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCGTAAACGATGt                                                                                                                                                                                         >  1:582830‑M1/261‑274 (MQ=255)               ctcctttgagttcccggccggaccgctggcaacaaaggataagggttgcgctcgttgcgagacttaacccaacatttcacaacacgagctgacgacagccatgcagcacctgtctcacggttcccgaaggcacattctcatctctgaaaacttccgtggatgtcaagaccaggtaaggttcttcgcgttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCGTAAACGATGt                                                                                                                                                                                         >  1:384873‑M1/261‑274 (MQ=255)                                                        atggttgcgctcgttgcgggacttaacccaacatttcccaacacgagctgactacagccaggcagcacctgtctcacggttcccgaaggcacattctcatctctgaaaacttccgtggatgtcaagaccaggtaagtttcttcgcgttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTa                                                                                                                                               >  1:135048‑M1/220‑275 (MQ=255)                                                         ggggtgcgcgtgttgagggacttaaaacaacatttcacaacacgagctgacgacagccatgcagcacctgtctcacggttcccgaaggcacattctcatctctgaaaacttccgtggatgtcaagaccaggtaaggttcttcgcgttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTa                                                                                                                                               >  2:624392‑M1/219‑274 (MQ=255)                                                              gcgctcgttgcgggccttaacccaacatgtcacaacacgagctgacgacagccatgcagcacctgtctcacggttcccgaaggcacattctcatctctgaaaacttccgtggatgtcacgccaaggtaaggttcttcgcgttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccncgtcgattcatttgagttttaaccttgcgGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCGTGAGGCGTGTCTTGCGGa                                                                                                                                                   <  1:538395‑M1/52‑1 (MQ=255)                                                              gcgctcgttgcgggacttaacccaacatttcacaacacgagctgacgacagccatgcagcacctgtctcacggttcccgaaggcacattctcatctctgaaaacttccgtggatgtcaagaccaggtaaggttcttcgcgttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcacttcatttgagttttaaccttgcgGCCGGAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGGTGGGGTTCCGGGNGTAacgcc                                                                                                                                          <  2:273107‑M1/61‑2 (MQ=255)                                                                  tcgttgcgggacttaacccaacatttcacaacacgagctgacgacagccatgcagcacctgtctcacggttcccgaaggcacattctcatctctgaaaacttccgtggatgtcaagaccaggtaaggttcttcgcgttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCg                                                                                                                                                                                                   >  1:42883‑M1/210‑213 (MQ=255)                                                                  tcgttgcgggacttaacccaacatttcacaacacgagctgacgacagccatgcagcacctgtctcacggttcccgaaggcacattctcatctctgaaaacttccgtggatgtcaagaccaggtaaggttcttcgcgttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTa                                                                                                                                               >  1:273112‑M1/210‑265 (MQ=255)                                                                         gggacttaacccaacatttcacaacacgagctgacgacagccatgcagcacctgtctcacggttcccgaaggcacattctcatctctgaaaacttccgtggatgtcaagaccaggtaaggttcttcgcgttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGGGGCTTTCGGACCTAACCagttaagccgtct                                                                                                                               <  1:334564‑M1/72‑7 (MQ=255)                                                                                                                        gcacctgtctcacggttcccgaaggcacattctcatctctgaaaacttccgtggatgtcaagaccaggtaaggttcttcgcgttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCg                                                                                                                                                                                                   >  2:190174‑M1/156‑159 (MQ=255)                                                                                                                               tctcacggttcccgaaggcacattctcatctctgaaaacttccgtggatgtcaagaccaggtaaggttcttcgcgttgcatcgaagtaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCg                                                                                                                                                                                                   >  1:106859‑M1/149‑152 (MQ=255)                                                                                                                                         cccgaaggcacattctcatctctgaaaacttccgtggatgtcaagaccaggtaaggttcttcgcgttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCgg                                                                                                                                                    <  1:39280‑M1/51‑1 (MQ=255)                                                                                                                                             aaggcacattctcatctctgaaaacttccgtggatgtcaagaccaggtaaggttcttcgcgttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCt                                                                                                                                                >  2:39280‑M1/135‑189 (MQ=255)                                                                                                                                                   cattctcatctctgaaaacttccgtggatgtcaagaccaggtaaggttcttcgcgttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCg                                                                                                                                                                                                   >  1:146261‑M1/129‑132 (MQ=255)                                                                                                                                                                          gtggatgtcaagaccaggtaaggttcttcgcgttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCg                                                                                                                                                                                                   >  1:687337‑M1/106‑109 (MQ=255)                                                                                                                                                                                    agaccaggtaaggttcttcgcgttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatgtgagttttaaccttgcgg                                                                                                                                                                                                      >  2:499841‑M1/96‑96 (MQ=255)                                                                                                                                                                                                    ttcgcgttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgg                                                                                                                                                                                                      >  1:145165‑M1/80‑80 (MQ=255)                                                                                                                                                                                                     tcgcgttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgg                                                                                                                                                                                                      <  2:125823‑M1/1‑1 (MQ=255)                                                                                                                                                                                                     gcggaCCCCTGGAAGAAGAGTGGCGGGCAGGTGCGAAAGCGTGGGGAGCAACCAGGATTAGAGACCCTGGTGGGCAACGCCGTAAACGATGTGGACTTGGGGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACATCCACAGaa  <  2:632792/275‑1 (MQ=11)                                                                                                                                                                                                         gttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCGt                                                                                                                                                                                                  >  1:125824‑M1/75‑79 (MQ=255)                                                                                                                                                                                                          ttgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCGTAAACg                                                                                                                                                                                             <  1:81042‑M1/10‑1 (MQ=255)                                                                                                                                                                                                           tgcatcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGcc                                                                                                                                                                                                    <  2:522772‑M1/3‑1 (MQ=255)                                                                                                                                                                                                              atcgaattaaaccacatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCGTAAACGATGt                                                                                                                                                                                         >  2:81041‑M1/70‑83 (MQ=255)                                                                                                                                                                                                                           acatgctccaccgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCg                                                                                                                                                                                                   >  1:387856‑M1/57‑60 (MQ=255)                                                                                                                                                                                                                                    accgcttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGa                                                                                                                                                   <  1:247156‑M1/52‑1 (MQ=255)                                                                                                                                                                                                                                        cttgtgcgggcccccgtcaattcatttgagttttaaccttgcgGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTa                                                                                                                                               >  2:247151‑M1/44‑99 (MQ=255)                                                                                                                                                                                                                                           gtgagggcccccgtcaattcatttgagttttaaccttgcgGc                                                                                                                                                                                                     <  2:219381‑M1/2‑1 (MQ=255)                                                                                                                                                                                                                                               gggcccccgtcaattcatttgagttttaaccttgcgGCCGTa                                                                                                                                                                                                 >  1:219386‑M1/37‑42 (MQ=255)                                                                                                                                                                                                                                                                                   GCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAACGCGTTAAGt                                                                                                                                    <  2:486905‑M1/67‑1 (MQ=255)                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                     ACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCCCCGGGCTCAACCTGGGAACTGCATCTGATACTGGCAAGCTTGAGTCTCGTAGAGGGGGGTAGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGGTGGCGAAGGCGGCCCCCTGGACGAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACATCCACAGAA  >  CP009273/220792‑221262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.