| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1730074 | 14 (0.360) | 4 (0.110) | 4/302 | NT | 22.9% | coding (440/582 nt) | sodB | superoxide dismutase, Fe |
| ? | CP009273 | = 1730330 | NA (NA) | intergenic (+114/+48) | sodB/ydhP | superoxide dismutase, Fe/putative transporter | |||||
CAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACCGACTGGAAAAGTCGCTGAAGCTATCGCCGCATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGGCTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTTCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCTATCTGGAGCACTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTA > CP009273/1729837‑1730343 | cAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACCGACTGGAAAAGTCGCTGAAGCTATCGCCGCATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGGCCTGGCTGGTGAAAAACCGCGATGGCAAACTGGCTATCGTTTCAACCTCTAACGCGGTTACGCCGCTGCCCACCGATGCCACTCCGCTGCTGCCCCTTTATTTCtc > 2:501737/1‑273 (MQ=255)cAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACCGACTGGAAAAGTCGCTGAAGCTATCGCCGCATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGCCTGGACCTGGCTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTTCACCCTCTAACGCGGGTACTCCGCTGACCACCGATGCGCACCCACTGCTCNCCCTTGATTTCttg > 2:522252/1‑273 (MQ=255) tCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACCGACTGGAAAAGTCGCTGAANCTATCGCCGCATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGGCTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTTCAACCTCTAACGCGGGTACTCCGCTGACCACCGCTGCGACTGCGCTGCTGACCGTTg < 1:501744/263‑1 (MQ=255) aCTGCCTGGCACCGAACGCCGGTGGCGAACCGACTGGAAAAGTCGCTGAAGCTATCGCCGCATCTTTTGGCAGCTTTGCCGATTTCAAAGCNCAGTTTACTGATGCAGCGATCAAAAACTTAGGTTCTGGCTGGACCTGGCTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTTCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAAAACGCTTATTACATAGACTATCGCAATGCa < 1:498711/275‑1 (MQ=255) cgccACCGGACGCCGGTGGCGAACCGACTGGAAAAGTCGCTGAAGCTATCGCCGCATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGGCTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTTCAACCTCTAACGCGGGTAATCCGCTGACAACCGCTGCGAGTCAGCTGCTGACCGTTGATGTCTGGGAACACGCTGAATACATCGACTACNGCACAGCAcctcct > 2:535003/4‑275 (MQ=255) aCGCCGGTGGCGAACCGACTGGAAAAGTCGCTGAAGCTATCGCCGCATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCACTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGGCTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTTCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCTATCTg < 1:708287/275‑1 (MQ=255) cGCTGAAGCTATCGCCGCATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGGCTGGTGAAAAACAGCGATGGCCAACTGGCTATCGTTTCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCt > 1:299222/1‑197 (MQ=255) tGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGGCTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTTCAACCTCTAACGCGGGTACTCCGCTGACaacgtgcgatttatcttgccggatgcggcgagtgccttatccgacctacatcgatgatccgcgtaggcctgataagcgtagcgcttcaggcaatgctgcctttgc > 2:153277‑M1/1‑105 (MQ=255) gCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGGCTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTTCAACCTCTAACGCGGGTACTCCGCTGACaacgtgcgatttatcttgccggatgcggcgagtgccttatccgacctacatcgatgatccgcgtaggcctgataagcgtagcgcttcaggcaatgctgcatttgccatc < 1:153280‑M1/210‑110 (MQ=255) aTCAAAAACTTTGGTTCTGGCTGGACCTGGCTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTTCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGc > 1:337393/1‑104 (MQ=255) aTCAAAAACTTTGGTTCTGGCTGGACCTGGCTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTTCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTc > 1:248266/1‑169 (MQ=255) aaaaCTTTGGTTCTGGCTGGACCTGGCTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTTCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACt < 2:337387/104‑1 (MQ=255) aaaaCTTTGGTTCTGGCTGGACCTGGCTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTTCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTgg < 2:248261/169‑1 (MQ=255) tCTGGCTGGACCTGGCTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTTCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGANGCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCTATCTGGAGCACTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCTTAcg < 1:522259/275‑1 (MQ=255) aCCTGGCTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTTCAACCTCTAACGCGGGTACTCCGCTGACaacgtgcgatttatcttgccggatgcggcgagtgccttatccgacctacatcga > 2:116181‑M1/1‑71 (MQ=255) ggctggTGAAAAACAGCGATGGCAAACTGGCTATCGTTTCAACCTCTAACGCGGGTACTCCGCTGACaacgtgcgatttatcttgccggatgcggcgagtgccttatccgacctacatcgatgat < 1:116182‑M1/125‑59 (MQ=255) ggcggCAAACTGGCTATCGTTTCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCAc > 1:574453/4‑121 (MQ=255) gCAAACTGGCTATCGTTTCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTcc < 2:574444/121‑1 (MQ=255) tggctccGCNCACCACCGCTGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCTATCTGGAGCACTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCGTATCAGGCCTACGCGGATCAGAGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTgtcagc > 2:259467‑M2/4‑269 (MQ=255) gTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCTATCTGGAGCACTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTgtcagc < 1:259472‑M2/275‑7 (MQ=255) gCTGACaacgtgcgatttatcttgccggatgcggcgagtgccttatccgacctacatctctgatccgcgtaggcctgatacgcgtagcgcttcaggcaatgctgcatttgccatcagttattatgcagcgagatttttcgctacgaattcccagttcaccagcgcccagaagtgctccagatagccaggacgtgcattgcgatagtcgatgtaataagcgtgttcccagacatcaacggtcagcagcggagtcgcagcggtggtgngcggagcca > 2:259467‑M1/1‑6 (MQ=255) gCTGACaacgtgcgatttatcttgccggatgcggcgagtgccttatccgacctacatcgatgatccgcgtaggcctgataagcgtagcgcttcaggcaatgctgcatttgccatcagttattatgcagcgagatttttcgctacgaattcccagttcaccagcgcccagaagtgctccagatagccaggacgtgcattgcgatagtcgatgtaataagcgtgttcccagacatcaacggtcagcagcggagtcgcatcggtggtcagcggagtac < 1:259472‑M1/275‑270 (MQ=255) tGACaacgtgcgatttatcttgccggatgcggcgagtgccttatccgacctacatcgatgatccgcgtaggc < 2:307730‑M1/72‑69 (MQ=255) tGACaacgngcgatttatcttgccggatgcggcgagtgccttatccgacctacatcgatgatccgcgtaggcctgataagcgtagcgcttcaggcaatgctgcatttgccatcagttattatgcagcgagatttttcgctacgaattcccagttcaccagcggccagaggggctccagatagccaggacgtg < 1:488847‑M1/192‑189 (MQ=255) gACaacgtgcgatttatcttgccggatgcggcgagtgccttatccgacctacatcgatgatccgcgtaggcatgataagcgtagcgcttcaggcaatgctgcatttgccatcagttattatgcagcgagatttttcgctacgaattcccagttcaccagcgcccagaa > 2:374343‑M1/1‑3 (MQ=255) accaccGATGCGACTCCGCTGCTGACCGTTGATGTCTg > 2:677231/1‑38 (MQ=255) accaccGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCTATCTGGAGCACTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCa > 2:192069/1‑156 (MQ=255) | CAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACCGACTGGAAAAGTCGCTGAAGCTATCGCCGCATCTTTTGGCAGCTTTGCCGATTTCAAAGCGCAGTTTACTGATGCAGCGATCAAAAACTTTGGTTCTGGCTGGACCTGGCTGGTGAAAAACAGCGATGGCAAACTGGCTATCGTTTCAACCTCTAACGCGGGTACTCCGCTGACCACCGATGCGACTCCGCTGCTGACCGTTGATGTCTGGGAACACGCTTATTACATCGACTATCGCAATGCACGTCCTGGCTATCTGGAGCACTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTA > CP009273/1729837‑1730343 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |