New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2072973	27 (0.700)	4 (0.110)	4/306	NT	11.5%	intergenic (‑131/+41)	yeeX/yeeA	UPF0265 family protein/putative transporter, FUSC family inner membrane protein
	?	CP009273	= 2073330	35 (0.930)					coding (743/1059 nt)	yeeA	putative transporter, FUSC family inner membrane protein

CACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACGGAACAGACGAACAAATTCCAGTACGTCCTGGAATGAAGGCTTGGTAGTTTCCATTTTTATACCCCTGATAATGTGAGAGTCGGATTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGTTCAGCCACACATAACCATAGATTGGTGTTTCCACAACCTTCAGGTCATGGTGGTTATTGAGCAACTGACGCAGCTCTTCCACAGCATCGTTCAATTTTTCCGTATTGGCAAAAACCGGCTGCGGATTACCTTCGTACAGCGCATGAACAAGGCTCAGCAGT  >  CP009273/2072734‑2073239                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                           cACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACGGAACAGACGAACAAATTCCAGTACGTCCTGGAATGAAGGCTTGGTAGTTTCCATTTTTATACCCCTGATAATGTGAGAGTCGGATTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCAAAGCAGCAGCAAGATGATTCTGAAGtt                                                                                                                                                                                                                                          >  1:349468/1‑274 (MQ=255)         tttttCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACGGAACAGACGAACAAATTCCAGTACGTCCTGGAATGAAGGCTTGGTAGTTTCCATTTTTATACCCCTGATAATGTGAGAGTCGGATTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAag                                                                                                                                                                                                                                                                  <  1:416661/242‑1 (MQ=255)                                                                                       aaTGAAGGCTTGGTAGTTTCCATTTTTATACCCCTGATAATGTGAGAGTCGGATTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCaaatcaatgcatactgggccacgcgccccagccatttcgtgttattg                                                                                                                                                                                                                             >  2:207009‑M1/1‑154 (MQ=255)                                                                                           aaGGCTTGGTAGTTTCCATTTTTATACCCCTGATAATGTGAGAGTCGGATTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCaaatcaatgcatactgggccacgcgccccagccatttcgtgttattgaacg                                                                                                                                                                                                                         <  1:207013‑M1/201‑52 (MQ=255)                                                                                           aaGGCTTGGTAGTTTCCATTTTTATACCCCTGATAATGTGAGAGTCGGATTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTGTTATCCCTTTTCACTATCATACCCGTTATCCTTGCTGAATCGAAGCAGCAGCAATATGATTCTGACGTTCAGAAATTATTTGCGCAAGGCCCGCCAAATCAGATTCGAAATCAACACAAGCTGCTGCGCCGTTTCCATGTTCAGCCACACATCACCaaa                                                                                                                                                >  2:188838/1‑272 (MQ=255)                                                                                                        ttCCATTTTTATACCCCTGATAATGTGAGAGTCGGATTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCaaatcaatgcatactgggccacgcgccccagccatttcgtgttattgaacgcgcaaaaacttcgtgatacccagcacatgatgcagcaaatactgctgagccttgttcatgcgctgtac                                                                                                                                                     >  1:108853‑M1/1‑137 (MQ=255)                                                                                                        ttCCATTTTTATACCCCTGATAATGTGAGAGTCGGATTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCaaatcaatgcatactgggccacgcgccccagccatttcgtgttattgaacgcgcaaaaacttcgtgatacccagcacatgatgcagcaaatactgctgagccttgttcatgcgctgtac                                                                                                                                                     <  2:108852‑M1/256‑120 (MQ=255)                                                                                                         tCCATTTTTATACCCCTGATAATGTGAGAGTCGGATTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCAGAAGTTCAGGAATTATTTGNGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGTTCAGCCACACATAACCATAGATTGGTGTTTCcac                                                                                                                                 >  1:559707/1‑275 (MQ=255)                                                                                                          cctttttttttCCTCTGATAATTGTAGAGTCTGATTCGTTTAAGCAACCGCTATTCGTTAGGTACAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGTTCAGCCACACATAACCATAGATTGGTGTTTCcaca                                                                                                                                <  1:254568/272‑1 (MQ=255)                                                                                                              ttttATACCCCTTATAATTGGAGAGTCGGATTCGTTTATGCAACCGCTATTCGTTAGGGCCAACATTATTCATAGCTGCCGCATATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTNATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAATCTGATGCGCCGTTTCCATGTTCAGCCACACATAACCATAGATTTGTGTTTCCACAACCt                                                                                                                            <  1:618676/275‑1 (MQ=255)                                                                                                                  ataaaaatgaatgtgtgAGAGTCGGTTTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCAGAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGTTCAGCCACACATAACCATAGATTGGTGTTTCCACAACCTTCa                                                                                                                         <  2:559698/261‑1 (MQ=255)                                                                                                                   taCCCCTGATAAGGTGAGAGTCGGATTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGTTCAGCCACACATAACCATAGATTGGTGTTTCCACAACCTTCAg                                                                                                                        <  1:188841/274‑1 (MQ=255)                                                                                                                        cTGATAATGTGAGAGTCGGATTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTCTCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTGAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGt                                                                                                                                                                   >  1:309330/1‑226 (MQ=255)                                                                                                                                     agTCGGATTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAagcagcagc                                                                                                                                                                                                                                                           >  2:161698/1‑125 (MQ=255)                                                                                                                                         ggATTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAga                                                                                                                                                                                                                                                       <  1:161701/125‑1 (MQ=255)                                                                                                                                                               ttCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGt                                                                                                                                                                   >  1:230050/1‑187 (MQ=255)                                                                                                                                                                   ttAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGTTCAg                                                                                                                                                               <  2:230045/187‑1 (MQ=255)                                                                                                                                                                       ggCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCTAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAattatt                                                                                                                                                                                                                               >  1:306336/1‑119 (MQ=255)                                                                                                                                                                           aaCATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCTAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTgcg                                                                                                                                                                                                                           <  2:306330/119‑1 (MQ=255)                                                                                                                                                                                       aGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGt                                                                                                                                                                           >  1:255195/1‑155 (MQ=255)                                                                                                                                                                                       aGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGTTCAGCCACACATAACCATAGATTGGTGTTTc                                                                                                                                    >  2:38581/1‑194 (MQ=255)                                                                                                                                                                                       aGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGTTCAGCCACACATAACAATAGATTGGTGttt                                                                                                                                     >  2:63214/1‑193 (MQ=255)                                                                                                                                                                                           gCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTcc                                                                                                                                                                       <  2:255190/155‑1 (MQ=255)                                                                                                                                                                                           gCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGTTCAGCCACACATAACCATAGATTGGTGTTTCcaca                                                                                                                                <  1:38581/194‑1 (MQ=255)                                                                                                                                                                                           gCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGTTCAGCCACACATAACCATAGATTGGTGTTTCcac                                                                                                                                 <  1:63215/193‑1 (MQ=255)                                                                                                                                                                                            ccGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGTTCAGCCACACATAACCATAGATTGGTGTTTCCACAACCTTCAGGTCATGGTGGTTATTGAGCAACTGACGNAGCACTTCCACAGCATCGTACAATTTTTcctcaatttaaaaaa                                                 >  2:446932/1‑259 (MQ=255)                                                                                                                                                                                             cGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGTCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGTTCAGCCACACATACCCATAGATTGGTTTTTCCACAACCTTCAGGTCATGGTGGTTATTGAGCAACTGACGCNCCTCTTCCACAGCATCATTCAATTTTTCCTTATCTTCaaaaaact                                              >  2:443183/1‑271 (MQ=255)                                                                                                                                                                                                              ttATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGAACGATGATTCTGAAGTTCAGGAATTATTTGCGAAAGGCCCGGCAAACCAGCATAGATAGCAACTCAAGCTGATGCGCGGTTTGCATGTTCAGCGACACATAACCATCAATTGGAGTTTAAACAACCTGCAGGTCATGGTGGTTATTGAGCAACTGACGACAAGCTTCAACATAATCGTTAAATGTATACGGATTGCCAAAAACCGGCGGGGGATTACCTTCGt                            >  2:240270/1‑275 (MQ=255)                                                                                                                                                                                                                             aTCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGTTCAGCCACACATAACCATAGATTGGTGTTTCCACAACCTTCAGGTCATGGTGGTTATTGAGCAACTg                                                                                                >  1:460475/1‑192 (MQ=255)                                                                                                                                                                                                                                 tACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGTTCAGCCACACATAACCATAGATTGGTGTTTCCACAACCTTCAGGTCATGGTGGTTATTGAGCAACTGACGc                                                                                            <  2:460468/192‑1 (MQ=255)                                                                                                                                                                                                                                        tATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGTTCAGCCACACATAACCATAGATTGGTGTTTCCACAACCTTCAGGTCATGGTGGTTATTGAGCAACTGACGCAGCTCTTCCACAGCATCGTTCAATTTTTCCGTATTGGCAAAAACCGGCTGCGGATTACCTTCGTACAGCGCATGAAAAAGGCTCACCAGt  >  1:12926/1‑275 (MQ=255)                                                                                                                                                                                                                                              tGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGTTCAGCCACACATAACCATAGATTGGTGTTTCCACAACCTTCAGGTCATGGTGGTTATTGAGCAACTGACGCAGCTCTTCCACAGCATCGTTCAATTTTTCCGTATTGGCAAAAACCGGCTGCGGATTACCtt                               >  2:709809/1‑240 (MQ=255)                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                           CACGGATCTTTTTCTCAACGTCCTGAATTTCACGTTGCAGTTTGTTCTTACGACGGAACAGACGAACAAATTCCAGTACGTCCTGGAATGAAGGCTTGGTAGTTTCCATTTTTATACCCCTGATAATGTGAGAGTCGGATTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGTTCAGCCACACATAACCATAGATTGGTGTTTCCACAACCTTCAGGTCATGGTGGTTATTGAGCAACTGACGCAGCTCTTCCACAGCATCGTTCAATTTTTCCGTATTGGCAAAAACCGGCTGCGGATTACCTTCGTACAGCGCATGAACAAGGCTCAGCAGT  >  CP009273/2072734‑2073239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.