New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2217990	30 (0.780)	4 (0.110)	4/302	NT	10.1%	coding (360/933 nt)	pbpG	D‑alanyl‑D‑alanine endopeptidase
	?	CP009273	= 2218142	42 (1.140)					coding (208/933 nt)	pbpG	D‑alanyl‑D‑alanine endopeptidase

GCGTATACGTCGGATTAGAGAAGGTTGCCATATCTTCCCGGGTAGTACTTAACTGCCCGATCAACGGATATTGTTTGCTGGCAATGAGCAGTTTGGTTAAGTCACGGGCAGTTGAAACGTTATGCACCGACAATCCGGTAGGTTCAACAAAGCGCGTGTTGTTCATTCCGAGCGATTTCGCTTTCGCATTCATTGCCTTAATAAAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCCTTTCATCTCCGGCGTCTGGCTGATATCCACTTTTAGTTTTTCATCCAGCGGCAGTCGTGCATCCAGCACAACCATCGCGGTCATTAATTTGCTGATAGACGCAATCGGACGCACCAGATCCGGGTGGTTCGAATAGATCACTTTGTTGGTATTCAGATCAACAATCATCGCGCTACCGGAGGCA  >  CP009273/2217719‑2218236                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                       gcttataCGTCGGGTTAGAGAAGGTTGCCATATCTTCCCGGGTAGTACTTAACTGCCAGATCAACGGATATTGTTTGCTGGCAATGAGCAGTTTGGTTAAGTCACGGGCAGTTGAANCGTTATGCACTTACAATCCGGTAGGTTCAACAAAGCGCGTGTTGTTCATTCCGAGCGATTTCGCTTTCGCATTCATTGCCTTAATAAAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGcc                                                                                                                                                                                                                                                     <  1:658069/272‑1 (MQ=255)                   agaAGGTTGCCATATCTTCCCGGGTAGTACTTAACTGCCCGATCAACGGATATTGTTTGCTGGCAATGAGCAGTTTGGTTAAGTCACGGGCAGTTGAAACGTTATGCACCGACAATCCGGTAGGTTCAACAAAGCGCGTGTTGTTCATTCCGAGCGATTTCGCTTTCGCATTCATTGCCTTAATAAAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTa                                                                                                                                                                                                                                   >  1:196562/1‑275 (MQ=255)                                            agtaCTTAATGTCCCGATCAACGGATATTGTTTGCTGGCAATGAGCAGTTTGGTTAAGTCACGGGCAGGTGAAACGTTATGCACCGACAATGCTGTAGGTTCAACAAAGCGCGTGTTGTTCATTCCGAGCGATTTCGCTTTCGCATTCATTGCCTTAATAAAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTa                                                                                                                                                                                                          <  1:163511/275‑1 (MQ=255)                                              taCTTAACTGCCTGATCAACGGATATTGTTTGCTGGCAATGAGCAGTTTGGTTAAGTCACGGGCAGTTGAAACGTTATGCACCGACAATCCGGTAGGTTCAACAAAGCGCGTGTTGTTCATTCCGAGCGATTTCGCTTTCGCATTCATTGCCTTAATAAAGGCTTTGTAACCACCGGGATAACGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGACACCATCAGGGCCCGCAACAGCCACACTTTACGGCTGATTTGGCTaattaggcgga                                                                                                                                                                                                          >  2:313297/1‑263 (MQ=255)                                                        cccGATCAACGGATATTGTTTGCTGGCAATGAGCAGTTTGGTTAAGTCACGGGCAGTTGAAACGTTATGCACCGACAATCCGGTAGGTTCAACAAAGCGCGTGTTGTTCATTCCGAGCGATTTCGCTTTCGCATTCATTGCCTTAATAAAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATCTCTTTACGGCTGACTTCGCTATTCTGTCGTACGCGCGaaga                                                                                                                                                                                                >  2:178682/1‑271 (MQ=255)                                                                       ttGTTTGCTGGCAATGGGCAGTTTGGTTAAGTAACGGGCAGTTGAAACGTTATGCACCGACAATCCGGTAGGTTCAACAAAGCGCGTGTTGTTCATTCCGAGCGATTTCGCTTTCGCATTCATTTCCTTAATAAAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCCTTTCATCTCCg                                                                                                                                                                               <  1:187272/275‑1 (MQ=255)                                                                               taacAATGAGCAGTTTGGTTAAGGCACGGGCAGTTGCAACGTTATGCACCGACAATCCGGTAGGTTCAACAAAGCGCGTGTTGTTCATTCCGAGCGATTTCGCTTTCGCATTCATTGCCTTAATAAAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCCTTTCATCTCCGGCGTCTgg                                                                                                                                                                       <  2:196559/272‑1 (MQ=255)                                                                                  cgagactcctttttGTTAAGTCACGGGCAGTTGAAACGTTATGCACCGACAATCCGTTAGGTTCAACAAAGCGCGTGTTGTTCATTCCGAGCGATTTCGCTTTCGCATTCATTGCCTTAATAAAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCCTTTCATCTCCGGCGTCTGGCt                                                                                                                                                                     <  2:118026/264‑1 (MQ=255)                                                                                         cAGTTTGGTTAAGTCACGGGCAGTTGAAACGTTATGCACCGACAATCCGGTAGGTTCAACAAAGCGCGTGTTGTTCATTCCGAGCGATTTCGCTTTCGCATTCATTGCCTTAATAAAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCCTTTCATCTCCGGCGTCTGGCTGATATCCa                                                                                                                                                             <  1:313303/275‑1 (MQ=255)                                                                                                      tCACGGGCAGTTGAAACGTTATGCACCGGCAATCCGGTAGGTTCAACAAAGCGCGTGTTGTTCATTCCGAGCGATTTCGCTTTCGCATTCATTGCCTTAATAAAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCNTATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCCTTTCATCTCCGGCGTCTGGCTGATATCCACTTTTAGTTTTTc                                                                                                                                                >  1:494022/1‑275 (MQ=255)                                                                                                                 tGAAACGTTATGCACCGACAATCCGGTAGGTTCAACAAAGCGCGTGTTGTTCATTCCGAGCGATTTCGCTTTCGCATTCATTGCCTTAATAAAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCCTTTCATCTCCGGCGTCTGGCTGATATCCACTTTTAGTTTTTCATCCAGCGGCa                                                                                                                                     <  1:178685/275‑1 (MQ=255)                                                                                                                          aTGCACCGACAATCCGGTAGGTTCAACAAAGCGCGTGTTGTTCATTCCGAGCGATTTCGCTTTCGCATTCATTGCCTTAATAAAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCaaattaatgaccgcgatggttgtgctggatgcacgactgccgctggctgaaaaactaaaagtggatataagccaaacgccggagatgaaaggggtctattcgcgcttacgaantaatagcgac                                                                                                                             >  2:54543‑M1/1‑151 (MQ=255)                                                                                                                              aCCGACAATCCGGTAGGTTCAACAAAGCGCGTGTTGTTCATTCCGAGCGATTTCGCTTTCGCATTCATTGCCTTAATAAAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCaaattaatgaccgcgatggttgtgctggatgcacgactgccgctggatgaaaaactaaaagtggatatcagccagacgccggagatgaaaggggtctattcgcgcgtacgactga                                                                                                                                     <  1:54543‑M1/262‑116 (MQ=255)                                                                                                                                  aCAATCCGGTAGGTTCAACAAAGCGCGTGTTGTTCATTCCGAGCGATTTCGCTTTCGCATTCATTGCCTTAATAAAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCTTTTCATCTCCg                                                                                                                                                                               >  2:689622/1‑216 (MQ=255)                                                                                                                                      tCCGGTAGGTTCAACAAAGCGCGTGTTGTTCATTCCGAGCGATTTCGCTTTCGCATTCATTGCCTTAATAAAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCCTTTCATCTCCGGCGt                                                                                                                                                                           <  1:689631/216‑1 (MQ=255)                                                                                                                                          gTAGGTTCAACAAAGCGCGTGTTGTTCATTCCGAGCGATTTCGCTTTCGCATTCATTGCCTTAATAAAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCGCTTTCATCTCCGGCGTCTGGCTGATATCCACTTTTAGTTTTTCATCCAGCGGCAGTCGTGCATTCAGCAACACCATcg                                                                                                             >  1:670179/1‑274 (MQ=255)                                                                                                                                                tCAACAAAGCGCGTGTTGTTCATTCCGAGCGATTTCGCTTTCGCATTCATTGCCTTAATAAAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACa                                                                                                                                                                                                                                              >  1:297999/1‑139 (MQ=255)                                                                                                                                                    caaAGCGCGGGTTGTTCATTCCGAGCGATTTCGCTTTCGCATTCATTGCCTTAATAAAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCat                                                                                                                                                                                                                                          <  2:297993/139‑1 (MQ=255)                                                                                                                                                                                                    ccTTAATAAAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCCTTTCATCTCCGGCGTCTGGCTGATATCCACTTTTAGTTTTTCATCCAGc                                                                                                                                         >  2:218974/1‑188 (MQ=255)                                                                                                                                                                                                        aataaAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTc                                                                                                                                                                                                                        >  2:516990/1‑105 (MQ=255)                                                                                                                                                                                                        aataaAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCCTTTCATCTCCGGCGTCTGGCTGATATCCACTTTTAGTTTTTCATCCAGCGGCa                                                                                                                                     <  1:218979/188‑1 (MQ=255)                                                                                                                                                                                                            aaGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTa                                                                                                                                                                                                                    <  1:516997/105‑1 (MQ=255)                                                                                                                                                                                                              ggCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCCTTTCATCTCCGGCGTCTGGCTGATATCCAC‑TTTAGTTTTTCATCCAGCTGCAGTCGTGCATCCAACACAACCATCGCGGTCATTAATTTGCTGATAGACGCAAACGGAACGAACAGATCCGGGTGGTTCGAAAAGCTCAATttgct                                       >  1:351298/1‑273 (MQ=255)                                                                                                                                                                                                                   tGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCa                                                                                                                                                                                                                                                    >  1:300662/1‑66 (MQ=255)                                                                                                                                                                                                                       accaccGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCaa                                                                                                                                                                                                                                                <  2:300656/66‑1 (MQ=255)                                                                                                                                                                                                                          accGGGATAATGGTGCGCAAGGCTTGCCGCCGCGGGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGCCCCCTTTCATCTCCGGCGTCTGGCTGATATCCAATTTTAGTTTTTCATCCACCGTCATTCGTGCATCCAGCCCAACCATCGCGGTCATTAATTTGCTGATCGACGCCATCTGACGCACAACATCCGCGTGGTTACATCTGATCACTTTCTTGGTATTCaaa                             >  1:450403/1‑272 (MQ=255)                                                                                                                                                                                                                            cGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCCTTTCATCTCCGGCGTCTGGCTGATATCCACTTTTAGTTTTTCATCCAGCGGCAGTCGTGCATCCAGCACAACCATCGCGGTCATTAATTTGCTGATAGACGCAATCGGACCCACCAGATCCGGGTGGTTCGAATAGATCACTTTGTTGGTATTCAGATca                          >  1:78154/1‑275 (MQ=255)                                                                                                                                                                                                                               gATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCCTTTCATCTCCGGCGTCTGGCTGATATCCACTTTTAGTTTTTCATCCAGCGGCAGTCGTGCATCCAGCACAACCATCGCGGTCATTAATTTGCTGATAGACGCAATCGGACGCACCAGATCCggg                                                              >  1:314377/1‑236 (MQ=255)                                                                                                                                                                                                                                   aTGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCCTTTCATCTCCGGCGTCTGGCTGATATCCACTTTTAGTTTTTCATCCAGCGGCAGTCGTGCATCCAGCACAACCATCGCGGTCATTAATTTGCTGATAGACGCAATCGGACGCACCAGATCCGggtggt                                                          <  2:314371/236‑1 (MQ=255)                                                                                                                                                                                                                                         cgcAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCaaattaatgaccgcgatggttgtgctggatgcacgactgccgctggatgaaaaactaaaagtggatatcagccagacgccggagatgaaaggggtct                                                                                                                                                       >  2:573070‑M1/1‑40 (MQ=255)                                                                                                                                                                                                                                             aGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCaaattaatgaccgcgatggttgtgctggatgcacgactgccgctggatgaaaaactaaaagtggatatcagccagacgccggagatgaaaggggtctattc                                                                                                                                                   <  1:573079‑M1/137‑102 (MQ=255)                                                                                                                                                                                                                                                 ttGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCCTTTCATCTCCGGCGTCTGGCTGNTATCCACTTTGCGTTTTTCATCCAGCGGCAGTCGTGCATCCAGCACAACCATCGCGGTCATTAATTTGCTGATAGACGCAATCGGACGCACCAGATCCGGGTGGTTCGAATAGATCACTTTGTTGGTATTCAGATCAACAATCATCGCGCTACCGGAg     <  1:655533/275‑1 (MQ=255)                                                                                                                                                                                                                                                     ggacgtgagtgtttCTGAAGACAAAGGCGCCAGCAACTGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCCTTTCATCTCCGGCGTCTGGCTGATATCCACTTTTAGTTTTTCATCCAGCGGCAGTCGTGCATCCAGCACAACCATCGCGGTCATTAATTTGCTGATAGACGCAATCGGACGCACCAGATCCGGGTGGTTCGAATAGATCACTTTGTTGGTATTCAGATCAACAATCATCGCGCTACCGGAGGCa  <  2:494015/263‑1 (MQ=255)                                                                                                                                                                                                                                                      gccgcGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCCTTTCATCTCCGGCGTCTGGCTGATATCCACTTTTAGTTTTTCATCCAGCGGCAGTCGTGCATCCAGCACAACCATCGCGGTCATTAATTTGCTGATAGACGCAATCGGAc                                                                            >  1:224821/1‑199 (MQ=255)                                                                                                                                                                                                                                                          cgcgGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCCTTTCATCTCCGGCGTCTGGCTGATATCCACTTTTAGTTTTTCATCCAGCGGCAGTCGTGCATCCAGCACAACCATCGCGGTCATTAATTTGCTGATAGACGCAATCGGACGCAc                                                                        <  2:224816/199‑1 (MQ=255)                                                                                                                                                                                                                                                                         aCATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCCTTTCATCTCCGGCGTCTGGCTGATATCCACTTTTAGTTTTTCATCCAGc                                                                                                                                         >  1:407901/1‑119 (MQ=255)                                                                                                                                                                                                                                                                            tCAGCaaattaatgaccgcgatggttgtgctggatgcacgactgccgctggatgaa                                                                                                                                                                                                     <  1:305651‑M1/56‑52 (MQ=255)                                                                                                                                                                                                                                                                             cAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCCTTTCATCTCCGGCGTCTGGCTGATATCCACTTTTAGTTTTTCATCCAGCGGCa                                                                                                                                     <  2:407894/119‑1 (MQ=255)                                                                                                                                                                                                                                                                                caaattaatgaccgcgatggttgtgctggatgcacgactgccgctggatgaaaaactaaaagtggatatcagccagacgccggagatgaaaggggtctattcgcgcgtacgactgaatagcga                                                                                                                              >  1:515138‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                       GCGTATACGTCGGATTAGAGAAGGTTGCCATATCTTCCCGGGTAGTACTTAACTGCCCGATCAACGGATATTGTTTGCTGGCAATGAGCAGTTTGGTTAAGTCACGGGCAGTTGAAACGTTATGCACCGACAATCCGGTAGGTTCAACAAAGCGCGTGTTGTTCATTCCGAGCGATTTCGCTTTCGCATTCATTGCCTTAATAAAGGCTTTGTAACCACCGGGATAATGGTGCGCAAGGCTTGCCGCCGCGCGGTTTTCTGAAGACATCAGCGCCAGCAACAGCATATCTTTACGGCTGATTTCGCTATTCAGTCGTACGCGCGAATAGACCCCTTTCATCTCCGGCGTCTGGCTGATATCCACTTTTAGTTTTTCATCCAGCGGCAGTCGTGCATCCAGCACAACCATCGCGGTCATTAATTTGCTGATAGACGCAATCGGACGCACCAGATCCGGGTGGTTCGAATAGATCACTTTGTTGGTATTCAGATCAACAATCATCGCGCTACCGGAGGCA  >  CP009273/2217719‑2218236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.