New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2650540 =	20 (0.520)	4 (0.110)	4/298	NT	12.3%	coding (1755/1851 nt)	hscA	DnaK‑like molecular chaperone specific for IscU
	?	CP009273	2650772 =	38 (1.040)					coding (1523/1851 nt)	hscA	DnaK‑like molecular chaperone specific for IscU

TCACGAACGATGCAGTGGCAGGTGGTGCAAGCACAGGATTTTTCACAGGCGTGTTCAATCTCGATACCGTTACGCAGAGCTGCGTCGAGAATGGTTTCACCGCTATTAGCTTCCAGAACAGCGCCATCAGGGCAGAGATCCTGATGAGGCAAAATAACAATCTTTGGCATATTAAACCTCGTCCACGGAATGGCCTTTCAGCGCACGACGAACCGACTGGTCCATGCGGCGAGCGGCGAAATCCTGGGTTTGTTTGTCTACGTTTTTAATCGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCACTCAGGTGAGCGGCAGCATCGTCAATGACCTGACGTTCTGCGGCGCTTAACAGCGCGGCATCAGCAGCCAGCGCGCCGTGCAGACTTTCCAGCACACGCGCCGCTTCTACTTTTTGTTCTGCCAGCATTCGGGCTTTTACGTCCTGCTCGGCATAGCTCATTG  >  CP009273/2650273‑2650748                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                 tCACGAACGATGCAGTGGCAGGTGGTGCAAGCACAGGATTTTTCACAGGCGTGTTCAATCTCGATACCGTTACGCAGAGCTGCGTCGAGAATGGTTTCACCGCTATTAGCTTCCAGAACAGCGCCATCAGGACAGAGATCCTGATGAGGCAAAATAACAATCTTTGGCATATTAAACCTCGTCCACGGGATGGCCTTTCAGCGCACGACGAACCGACTGGACCAATCGGCGACCGGCGAAACCAGGGGGTTGTTGGTCTACGTTTTTAATCGCtt                                                                                                                                                                                                           >  1:74692/1‑275 (MQ=255)                                        ttttCACAGGCGTGTTCAATCTCGATACCGTTACGCAGAGCTGCGTCGAGAATGGTTTCACCGCTATTAGCTTCCAGAACAGCGCCATCAGGGCAGAGATCCTGATGAGGCAAAATAACAATCTTTGGCATATTAAACCTCGTCCACGGAATGGCCTTTCAGCGCACGACGAACCGACTGGTCCATGCGGCGAGCGGCGAAATCCTGGGTTTGTTTGTCTACGTTTTTAATCGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCa                                                                                                                                                                     <  1:246977/274‑1 (MQ=255)                                                        atgcagggtgagcgcgaactggtgcaggactgccgctcactggcgcgttttgcgctgcgtggtattccggcgctaccggctggcggtgcgcatattcgcgtgacgttccaggtcgatgccgacggtcttttgagcgtgacggcgatggagaaatccaccggcgttgtggcgtctattcaggtcaaaccgtcttacggtctgaccgatagcgaaa                                                                                                                                                                                                                 >  1:685810‑M1/213‑214 (MQ=255)                                                                     gTTACGCAGAGCTGCGTCGAGAATGGTTTCACCGCTATTAGCTTCCAGAACAGCGCCATCAGGGCAGAGATCCTGATGAGGCAAAATAACAATCTTTGGCATATTACACCTCGTCCACGGAATGGCCTTTCAGCGCACGACGAACCGACTGGTCCATGCGGCGAGCGGCGAAATCCTGGGTTTGTTTGTCTACGTTTTTAATCGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCACTCCAGTTAGCGGCACCATCGTCAATGAcc                                                                                                                                       >  1:456750/1‑275 (MQ=255)                                                                         cGCAGAGCTGCGTCGAGAATGGTTTCACCGCTATTAGCTTCCAGAACAGCGCCATCAGGGCAGAGATCCTGATGAGGCAAAATAACAATCTTTGGCATATTAAACCTCGTCCACGGAATGGCCTTTCAGCGCACGACGAACCGACTGGTCCATGCGGCGAGCGGCGAAATCCTGGGTTTGTTTGTCTACGTTTTTAATCGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCACTCAGGTGAGCGGCAGCATCGTCAATGACCTGAc                                                                                                                                   >  1:161025/1‑275 (MQ=255)                                                                                        agaATGGTTTCACCGCTATTAGCTTCCAGAACAGCGCCATCAGGGCAGAGATCCTGATGAGGCAAAATAACAATCTTTGGCATATTAAACCTCGTCCACGGAATGGCCTTTCAGCGCACGACGAACCGACTGGTCCATGCGGCGAGCGGCGAAATCCTGGGTTTGTTTGTCTACGTTTTTAATNGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCACTCAGGTGAGCGACAGCATCGTCAATGACATGACGATCTGCTGCGCTTa                                                                                                                    >  1:512161/1‑275 (MQ=255)                                                                                               tttCACCGCTATTAGCTTCCAGAACAGCGCCATCAGGGCAGAGATCCTGATGAGGCAAAATAACAATCTTTGGCATATTAAACCTCGTCCACGGAATGGCCTTTCAGCGCACGACGAACCGACTGGTCCATGCGGCGAGCGGCGAAATCCTGGGTTTGTTTGTCTACGTTTTTAATCGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCACTCAGGTGAGCGGCAGCATCGTCAATGACCTGACGTTCTGCGCCGCTTAACAgcgc                                                                                                             >  1:269245/1‑275 (MQ=255)                                                                                                     cgttttgcgctgcgtggtattccggcgctaccggctggcggtgcgcatattcgcgtgacgttccaggtcgatgccgacggtcttttgagcgtgacggcgatggagaaatccaccggcgttgaggcgtctattcaggtcaaaccgtcttacggtctgaccgatagcgaAATCGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCACTCAGGTGAGCGGCAGCATCGTCAATGACCTGACGTTCTGCGGCGCTTAACAGCGCggcca                                                                                                        <  1:115837‑M1/107‑3 (MQ=255)                                                                                                        tttgcgctgcgtggtattccggcgctaccggctggcggtgcgcatattcgcgtgacgttccaggtcgatgccgacggtcttttgagcgtgacggcgatggagaaatccaccggcgttgaggcgtctattcaggtcaaaccgtcttacggtctgaccgatagcgaAATCGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCACTCAGGTGAGCGGCAGCATCGTCAATGACCTGACGTTCTGCGGCGCTTAACAGCGCGGCATcagc                                                                                                    <  1:238344‑M1/111‑1 (MQ=255)                                                                                                        acgtgcctcnaaGAACAGCCCCATCAGGGCAGCGTTCCTGATGAGGTAAAATACCAATCTTTGGCATATTAACCCTCGTCCACGGAATGGCCTTTCAGCGCACGACGAACCGACTGGTCCATGCGGCGAGCGGCGAAATCCTGGGTTTGTTTGTCTACGTTTTTAATCGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCACTCAGGTGAGCGGCAGCATCGTCAATGACCTGACGTTCTGCGGCGCTTAACAGCGCGGCATcagc                                                                                                    <  2:269240/264‑1 (MQ=255)                                                                                                         aTTAGCTTCCAGAACAGCGCCATCAGGGCAGAGATCCTGATGAGGCAAAATAACAATCTTTGGCATATTAAACCTCGTCCACGGAATGGCCTTTCAGCGCACGACGAACCGACTGGTCCATGCGGCGAGCGGCGAAATCCTGGGTTTGTTTGTCTACGTTTTTAATCGCTTGtt                                                                                                                                                                                                        >  1:4672/1‑174 (MQ=255)                                                                                                             gCTTCCAGAACAGCGCCATCAGGGCAGAGATCCTGATGAGGCAAAATAACAATCTTTGGCATATTAAACCTCGTCCACGGAATGGCCTTTCAGCGCACGACGAACCGACTGGTCCATGCGGCGAGCGGCGAAATCCTGGGTTTGTTTGTCTACGTTTTTAATCGCTTGTTCGAt                                                                                                                                                                                                    <  2:4672/174‑1 (MQ=255)                                                                                                                gcgtggtattccggcgctaccggctggcggtgcgcatattcgcgtgacgttccaggtcgatgccgacggtcttttgagcgtgacggcgatggagaaatccaccggcgttgaggcgtctattcaggtcaaaccgtcttacggtctgaccgatagcgaAATCg                                                                                                                                                                                                              <  2:417337‑M1/5‑1 (MQ=255)                                                                                                                          cgcCATCAGGGCAGAGATCCTGATGAGGCAAACTAACAATCTTTGGCATATTAAACCTCGTCCACGGAATGGCCTTTCAGCGCACGACGAACCGACTGGTCCATGCGGCGAGCGGCGAACTCCTGGGTTTGTTTGTCTACGTTTTTAATCGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCACTCAGGTGAGCGGCAGCATCGTCCATGACCTGACGTTCTGCGGCGCTTAACAGCTCGGCATCAGCAGCCAGCCCGCCGTGcc                                                                                   >  1:379114/1‑273 (MQ=255)                                                                                                                                                     gCAAAATAACAATCTTTGGCATATTAAACCTCGTCCACGGAATGGCCGTTCAGCGCACGACGAACCGACTGGTCCATGCGGCGAGCGGCGAAATCCTGGGTTTGTTTGTCTACGTTTTTAATCGCTTGATCGATGGCGTCAACATCATCGCCTTGCGCCCCTTCACTCAGGTGAGCGGCAGCATCGTCAATGACCGGACGTTCTTCGTCGCTTAACCGCGCGCCATCCGACGCCAGCGCTCCGTGCAGACTTTCCAGCCCACACGCCCCTTCCAc                                                       >  1:673790/1‑275 (MQ=255)                                                                                                                                                                    cgtgtagagggcgacggtctttggagcgtggcggcgatggcgaactccaccggcgttgagtcgtctattcaggtccaaccgtcttacggtctgaccgatagcgaAATCGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCACTCAGGTGAGCGGCAGCATCGTCAATGACCTGACGTTCTGCGGCGCTTAACAGCGCGGCATCAGCAGCCAGCGCGCCGTGCAGACTTTCCAGCACACGCGCCGCTTCTACTTTTTGTTCTGc                                           >  2:115836‑M1/105‑272 (MQ=255)                                                                                                                                                                             tAAACCTCGTCCACGGAATGGCCTTTCAGCGCACGACGAACCGACTGGTCCATGCGGCGAGCGGCGAAATCCTGGGTTTGTTTGTCTACGTTTTTAATCGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCAc                                                                                                                                                                    >  2:403757/1‑142 (MQ=255)                                                                                                                                                                                 ccTCGTCCACGGAATGGCCTTTCAGCGCACGACGAACCGACTGGTCCATGCGGCGAGCGGCGAAATCCTGGGTTTGTTTGTCTACGTTTTTAATCGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCACTCAg                                                                                                                                                                <  1:403764/142‑1 (MQ=255)                                                                                                                                                                                      tCCACGGAATGGCCTTTCAGCGCACGACGAACCGACTGGTCCATGCGGCGAGCGGCGAAATCCTGGGTTTGTTTGTCTACGTTTTTAATCGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCACTCAgg                                                                                                                                                               >  2:473218/1‑138 (MQ=255)                                                                                                                                                                                          cGGAATGGCCTTTCAGCGCACGACGAACCGACTGGTCCATGCGGCGAGCGGCGAAATCCTGGGTTTGTTTGTCTACGTTTTTAATCGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCACTCAGGTGAg                                                                                                                                                           <  1:473225/138‑1 (MQ=255)                                                                                                                                                                                           ggAATGGCCTTTCAGCGCACGACGAACCGACTGGTCCATGCGGCGAGCGGCGAAATCCTGGGTTTGTTTGTCTACGTTTTTAATCGCTTGTTCGATGGCGTCAATATCATCGCCCTGCGCCACTTCACTCAGGTGAGCGGCAGCATCGTCAATGACCTGACGTTCTGCGGCGCTTAACAGCGCGGCATCAGCAGCCAGCGCGCCGTGCAGACTTTCCAGCACACGCGCCGCTTCTACTTTTTGTTCTGCCAGCATTCGGGCTTTTACGTCCTGCt                 <  1:450097/275‑1 (MQ=255)                                                                                                                                                                                                           gagaaatccaccggcgttgaggcgtctattcaggtcaaaccgtcttacggtctgaccgatagcgaAATCGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCACTCAGGTGAGCGGCAGCATCGTCAATGACCTGACGTTCTGCGGCGCTTAACAGCGCGGCATCAGCAGCCAGCGCGCCGTGCAGACTTTCCAGCACACGCGCCGCTTCTACTTTTTGTTCTGCCAGCATTCGGGCTTTTACGTCCTGCTCGGCATAGCTCATTg  >  2:238339‑M1/66‑274 (MQ=255)                                                                                                                                                                                                                                                            gtttgtCTACGTTTTTAATCGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCACTCAGGTGAGCGGCAGCATCGTCAATGACCTGACGTTCTGCGGCGCTTAACAGCGCGGCATCAGCAGCCAGCGCGCCGTGCAGACTTTCCAGCACACGCGCCGCTTCTACTTTTTGtt                                               >  2:9448/1‑180 (MQ=255)                                                                                                                                                                                                                                                            gtttgtCTACGTTTTTAATCGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCACTCAGGTGAGCGGCAGCATCGTCAATGACCTGACGTTCTGCGGCGCTTAACAGCGCGGCATCAGCAGCCAGCGCGCCGTGCAGACTTTCCAGCACACCCGCCGCTTCTACTTTTTGTTCTGCCAGCATTCCGGCTTTTACGTcc                     >  2:511443/1‑206 (MQ=255)                                                                                                                                                                                                                                                                gtCTACGTTTTTAATCGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCACTCAGGTGAGCGGCAGCATCGTCAATGACCTGACGTTCTGCGGCGCTTAACAGCGCGGCATCAGCAGCCAGCGCGCCGTGCAGACTTTCCAGCACACGCGCCGCTTCTACTTTTTGTTCTGc                                           <  1:9448/180‑1 (MQ=255)                                                                                                                                                                                                                                                                gtCTACGTTTTTAATCGCTTGTNCGATGGCGTCAACATCATCGCCCTGCGCCACTTCACTCAGGTGAGCGGCAGCATCGTCAATGACCTGACGTTCTGCGGCGCTTAACAGCGCGGCATCAGCAGCCAGCGCGCCGTGCAGACTTTCCAGCACACGCGCCGCTTCTACTTTTTGTTCTGCCAGCATTCGGCCTTTTACGTCCTGCt                 <  1:511450/206‑1 (MQ=255)                                                                                                                                                                                                                                                                       tttttAATCGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCACTCAGGTGAGCGGCAGCATCGTCAATGACCTGACGTTCTGCGGCGCTTAACAGCGCGGCATCAGCAGCCAGCGCGCCGTGCAGACTTTCCAGCACACGCGCCGCTTCTACTTTTTGTTCTGCCAGCATTCGGGCTTTTACGTCCTGCTCGGCATAGCTc      >  1:333267/1‑210 (MQ=255)                                                                                                                                                                                                                                                                           tAATCGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCCCTCAGGTGTGCGGCAGCATCGTCAATGACCTGACGTTCTGCGGCGCTTAACAGCGCGGCATCAGCAGCCAGCGCGCCGTGCAGACTTTCCAGCACACGCGCCGCTTCTACTTTTTGTTCTGCCAGCATTCGGGCTTTTACGTCCTGCTCGGCATAGCTCATTg  <  2:333261/210‑1 (MQ=255)                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                 TCACGAACGATGCAGTGGCAGGTGGTGCAAGCACAGGATTTTTCACAGGCGTGTTCAATCTCGATACCGTTACGCAGAGCTGCGTCGAGAATGGTTTCACCGCTATTAGCTTCCAGAACAGCGCCATCAGGGCAGAGATCCTGATGAGGCAAAATAACAATCTTTGGCATATTAAACCTCGTCCACGGAATGGCCTTTCAGCGCACGACGAACCGACTGGTCCATGCGGCGAGCGGCGAAATCCTGGGTTTGTTTGTCTACGTTTTTAATCGCTTGTTCGATGGCGTCAACATCATCGCCCTGCGCCACTTCACTCAGGTGAGCGGCAGCATCGTCAATGACCTGACGTTCTGCGGCGCTTAACAGCGCGGCATCAGCAGCCAGCGCGCCGTGCAGACTTTCCAGCACACGCGCCGCTTCTACTTTTTGTTCTGCCAGCATTCGGGCTTTTACGTCCTGCTCGGCATAGCTCATTG  >  CP009273/2650273‑2650748

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.