New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2697552 =	22 (0.570)	9 (0.250)	7/290	NT	26.3%	intergenic (‑130/+142)	rnc/lepB	RNase III/leader peptidase (signal peptidase I)
	?	CP009273	2697894 =	30 (0.850)					coding (775/975 nt)	lepB	leader peptidase (signal peptidase I)

AATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCC  >  CP009273/2697282‑2697802                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                           cgggatgcagttccggccaggcgtgtgaaaacgcgctgccggtcacctacgcaaacgtggaaccgagcgatttcgttcagaccttctcacgccgtaatggtggggaagcgaccagcggattctttgaagtgccgaaaaacgaaaccaaagaaaatggaattcgtctttccgagcgtaaagagacactgggtgatgtgacgcaccgcattctgacagtgccgattgcgcaggatcaggtggggatgtattaccagcagccagggcaacaacTgg                                                                                                                                                                                                                                                          >  1:148007‑M1/271‑273 (MQ=255)   gacagcatttccggccaggcgtgtgaaaacgcgctgccggtcacctactcaaacgtggaaccgagcgatttcgttcagaccttctcacgccgtaatggtggggaagcgaccagcggattctttgaagtgacgaaaaacgaaaccaaagaaaatggaattcgtctttccgagcgtaaagagacactgggtgatgtgacgcaccgcattctgacagtgccgattgcgcaggatcaggtggggatgtattaccagcagccagggcaacaacTGGCaa                                                                                                                                                                                                                                                       >  1:174389‑M1/269‑274 (MQ=255)                   aggcgtgtgaaaacgagctgccggtcacctactcaaacgcggaaccgagcgatttcgttcagaccttctcacgcagtagtggtggggaagcgacccgcggattctttgaagtgccgacaaacgaaaccaaagaaaatggaattcgtctttccgagcgtaaagagacactgggtgatgtgacgcaccgcattatgacagtgccgattgcacaggaacagggggggatgtataaccagaagccagggcaaaaacTGGCAACATGGAggtgccggtc                                                                                                                                                                                                                                       <  2:174386‑M1/22‑5 (MQ=255)                                                     aaacgtggaaccgagcgatttcgttcagaccttctcacgccgtaatggtggggaagcgaccagcggattctttgaagtgccgaaaaacgaaaccaaagaaaatggaattcgtctttccgagcgtaaagagacactgggtgatgtgacgcaccgcattctgacagtgccgattgcgcaggatcaggtggggatgtattaccagcagccagggcaacaacTGGCAACCTGGAGGTGCCAACCTTAAACATCGGGGGAATATTCTATACACAacgacg                                                                                                                                                                                                    <  1:11831‑M1/57‑1 (MQ=255)                                                                                                               accagcggattctttgaagtgccgaaaaacgaaaccaaagaaaatggaattcgtctttccgagcgtaaagagacactgggtgatgtgacgcaccgcattctgacagtgccgattgcgcaggatcaggtggggatgtattaccagcagccagggcaacaacTGGCAAcc                                                                                                                                                                                                                                                     <  1:684094‑M1/8‑1 (MQ=255)                                                                                                                   gcggattctttgaagtgccgaaaaacgaaaccaaagaaaatggaattcgtctttccgagcgtaaagagacactgggtgatgtgacgcaccgcattctgacagtgccgattgcgcaggatcaggtggggatgtattaccagcagccagggcaacaacTGGCAACCTGGa                                                                                                                                                                                                                                                 >  2:684085‑M1/157‑168 (MQ=255)                                                                                                                                   aTGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCgg                                                                                                                                                                                                                            >  1:448691/1‑173 (MQ=255)                                                                                                                                       ggTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGa                                                                                                                                                                                                                        <  2:448684/173‑1 (MQ=255)                                                                                                                                                     agaaaatggaattcgtctttccgagcgtaaagagacactgggtgatgtgacgcaccgcattctgacagtgccgattgcgcaggatcaggtggggatgtattaccagcagccagggcaacaacTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCAAAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAAAGAAGATGGATATTAATGGATgc                                                                                                    <  1:219971‑M1/153‑1 (MQ=255)                                                                                                                                                          aataaatGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGAt                                                                                                                                                                           >  2:520125/1‑199 (MQ=255)                                                                                                                                                           tgtaattcggctttccgagcgtacagtgacacggggtgatgtgccgctccgcattctgacagtgccgattgcgcaggatcaggtggggaggtattaccagccgccagggcaacaacTGGCAACCTGGAGGTGCCAACCTTCATCTTCGGGGGAATATTCTATACACAACGGCGGGGGATGTCGTTAGCCCCGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGGAGATGGCTATTAATGGATGCCGCCaa                                                                                              >  2:293781‑M1/117‑275 (MQ=255)                                                                                                                                                           tggaattcgtctttccgagcgtaaagagacactgggtgatgtgacgcaccgcattctgacagtgccgtttgcgcaggagcaggtggggatgtattaccagcagccagggcaaccacNGGCAACCTGGAAGTGCCAAGCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCaa                                                                                              >  1:665904‑M1/117‑275 (MQ=255)                                                                                                                                                              aatGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGTGGGATGTCGTTAGCCACGGGAGATTTAt                                                                                                                                                                       <  1:520132/199‑1 (MQ=255)                                                                                                                                                              aatGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGCGTGCCGTGTCAACCTGGAGTTTCCAACCTTAAACTTCGCGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGTGAGATTTATCTCATAAGTAATTCACGTTGTCGCCTTAACGGCGACAACGTGAACTAAAATGTCTATTAATGTATGCCACCAATg                                                                                            >  1:282489/1‑274 (MQ=255)                                                                                                                                                                 tcgtctttccgagcgtaaagagacactgggtgatgtgacgcaccgcattctgacagtgccgattgcgcaggatcaggtggggatgtattaccagcagccagggcaacaacTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGGCGCCATAACGGCGACCAAGTGAACGAAAACGGcaattaatggatgcagacaaagagac                                                                                        <  1:293787‑M1/165‑13 (MQ=255)                                                                                                                                                                                CACACGAAACAGACCTGATATACATGGGTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGAagacaag                                                                         <  1:410092‑M1/275‑4 (MQ=255)                                                                                                                                                                                   ggtggcactgggtgatgtgacgctccgcattctgacagtgccgattgcgcaggctcagttggggatgtagtaccagcagccagggcaacaacTGGCAACCTGGAGGTTCCATCCTTAAACTTCGGGGGAATATTCTAAACACAACGACGGGGGATGTCGTTAGACACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTc                                                                       >  2:219966‑M1/93‑274 (MQ=255)                                                                                                                                                                                                    cccatataccggtaaactgaaactgcagcgaagcagttagcagaaccatgtatatcaggtctgtttcgtgtgcCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACTTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCAATTAATGGATGCCGCCAATGCGAATTAATATCAGACCAGGCGGCCATTCGCCTTCTTg                                                      >  1:364433‑M2/74‑274 (MQ=255)                                                                                                                                                                                                      catataccggtaaactgaaactgcagcgaagcagttagcagaaccatgtatatcaggtctgtttcgtgtgcCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGt                                                                                                                                                     >  1:408690‑M2/72‑177 (MQ=255)                                                                                                                                                                                                      catataccggtaaactgaaactgcagcgaagcagttagcagaaccatgtatatcaggtctgtttcgtgtgcCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGa                                                                                                                                    >  2:592263‑M2/72‑194 (MQ=255)                                                                                                                                                                                                      catataccggtaaactgaaactgcagcgaagcagttagcagaaccatgtatatcaggtctgtttcgtgtgcCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATgccg                                                                                                  >  2:209694‑M2/72‑228 (MQ=255)                                                                                                                                                                                                          taccggtaaactgaaactgcagcgaagcagttagcagaaccatgtatatcaggtctgtttcgtgtgcCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTc                                                                                                                                                 <  2:408683‑M2/110‑1 (MQ=255)                                                                                                                                                                                                          taccggtaaactgaaactgcagcgaagcagttagcagaaccatgtatatcaggtctgtttcgtgtgcCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAAc                                                                                                                                <  1:592272‑M2/127‑1 (MQ=255)                                                                                                                                                                                                          taccggtaaactgaaactgcagcgaagcagttagcagaaccatgtatatcaggtctgtttcgtgtgcCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCaa                                                                                              <  1:209698‑M2/161‑1 (MQ=255)                                                                                                                                                                                                           ttCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGt                                                                                                                                                                                            >  1:356586/1‑133 (MQ=255)                                                                                                                                                                                                             cTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCgg                                                                                                                                                                                                                            >  2:572378/1‑99 (MQ=255)                                                                                                                                                                                                              tGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCgggg                                                                                                                                                                                                                          >  1:218469/1‑100 (MQ=255)                                                                                                                                                                                                               gCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGtt                                                                                                                                                                                        <  2:356580/133‑1 (MQ=255)                                                                                                                                                                                                                 tAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGa                                                                                                                                                                                                                        <  1:572387/99‑1 (MQ=255)                                                                                                                                                                                                                  aaCTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAat                                                                                                                                                                                                                      <  2:218464/100‑1 (MQ=255)                                                                                                                                                                                                                      cagtgccgattgcgcaggatcaggtggtgatgtattaccagcagccagggcaacaacTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATgccg                                                                                                  <  1:410547‑M1/155‑1 (MQ=255)                                                                                                                                                                                                                          gccgattgcgcaggatcaggtggggatgtattaccagcagccagggcaacaacTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCaa                                                                                              >  2:410540‑M1/54‑212 (MQ=255)                                                                                                                                                                                                                          cGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAatat                                                                                                                                                                                                                    >  2:664544/1‑94 (MQ=255)                                                                                                                                                                                                                          cGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAatat                                                                                                                                                                                                                    >  2:92161/1‑94 (MQ=255)                                                                                                                                                                                                                              gCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCta                                                                                                                                                                                                                <  1:92162/94‑1 (MQ=255)                                                                                                                                                                                                                              gCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCta                                                                                                                                                                                                                <  1:664553/94‑1 (MQ=255)                                                                                                                                                                                                                                       gtttACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCgg                                                                                                                                                                                                                            >  2:436923/1‑73 (MQ=255)                                                                                                                                                                                                                                           aCCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGa                                                                                                                                                                                                                        <  1:436930/73‑1 (MQ=255)                                                                                                                                                                                                                                           aCCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACaa                                                                                                                                                                                                         >  2:394644/1‑88 (MQ=255)                                                                                                                                                                                                                                               gTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAacgac                                                                                                                                                                                                     <  1:394651/88‑1 (MQ=255)                                                                                                                                                                                                                                                       ggACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCa                                                                                                                                                        >  1:560652/1‑125 (MQ=255)                                                                                                                                                                                                                                                       ggACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTTCTTATCGACGCTCATCCAGATAGCCGTTGCCCGAACGACCAGATACGCTTcc  >  1:568442/1‑275 (MQ=255)                                                                                                                                                                                                                                                           cAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGtt                                                                                                                                                    <  2:560643/125‑1 (MQ=255)                                                                                                                                                                                                                                                                   tttcgtgtgcCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAAc                                                                                                                                >  1:650047‑M2/11‑137 (MQ=255)                                                                                                                                                                                                                                                                       gtgtgcCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGa                                                                                                                            <  2:650038‑M2/131‑1 (MQ=255)                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                           AATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCC  >  CP009273/2697282‑2697802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.