New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2936456	37 (0.960)	4 (0.110)	4/296	NT	9.9%	coding (49/228 nt)	ygdI	DUF903 family verified lipoprotein
	?	CP009273	= 2936827	38 (1.050)					coding (132/1206 nt)	csdA	cysteine sulfinate desulfinase

ATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATCAGTCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCCAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACGTTTTTAATCC  >  CP009273/2936201‑2936712                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                 aTTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATCAGTCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAg                                                                                                                                                                                                                                               <  1:574819/275‑1 (MQ=255)           tctgtcCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGACATCATACCGGTATCGTTATCAGTCTGTTGTTTGCCGTCAGAGACGATGGTACGTCCGTAATTGGTGTGCATCACATAGTTCGAACAGGAACAAGCGCTCAGGGCACAAGTCGGCATCCGGGCAGAaataa                                                                                                                                                                                                                                     >  2:240540/1‑275 (MQ=255)                 taTAGTGTTTAATGTCGCACCGCTTTATTGCGGTTCTTTTTTTTAAATTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATCAGTCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCgg                                                                                                                                                                                                                               <  2:543588/274‑1 (MQ=255)                                  cACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATCAGTCTGTGGTTTGCCGTCCGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCCGGGCAAACGTCAGCATACAGGCAGAAATAATTGCGGCANTCTTTTTCctcgtc                                                                                                                                                                                                              >  2:519389/1‑275 (MQ=255)                                                      tttttttACCTTGCTGTCTTAAATTATTGATCCAGTTCGACCATCTCTTTTACGTCAGTAAGGTTGATCTGCTGTTTGTTGCCATTAGCGTNTTTATACGAAATCATACCGCTATCGTTATCAGTCTGTGGTTTGCCGTCAGAGACGATGGTACGT‑CGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATtaata                                                                                                                                                                                         <  1:554015/275‑1 (MQ=255)                                                                    gATCGCGAATTACTGTTCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCNTACCGGTATCGTTATCAGTCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTGATAAATCTTAATAGTa                                                                                                                                                                            <  1:519396/275‑1 (MQ=255)                                                                                     ccAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATCAGTCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAAAAGGCGCTCAGGACAAAAGTCANCATACAGGCAGAAATAATTGCGGCAGTCTTTTtcatca                                                                                                                                                                                                                >  1:537565/1‑222 (MQ=255)                                                                                                             cAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATCAGTCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTTCTTAACAGTCTAAAATTAACACCTAACACTATTCAGc                                                                                                                                    >  1:254133/1‑274 (MQ=255)                                                                                                                         tcttctGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATCAGTCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGttacttac                                                                                                                       <  1:240545/275‑1 (MQ=255)                                                                                                                             ctgTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATCAGTCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAATCGATTAATAAATCTTAATAATATTGATTAACAGTCTAAAATTAACGCATAAAACTATTCAGCAAATGTTAATTACTCgg                                                                                                                   >  2:302085/1‑275 (MQ=255)                                                                                                                               gtttgttGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATCAGTCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCt                                                                                                                 >  1:300130/1‑275 (MQ=255)                                                                                                                                          ttAGCGTCTTGATACGAAATCATACCGGTATCGTTATCAGTCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGactgtaaaactgttgggtggcttcaaccacggcttcaggtttaagcgcggtcgcggcgctgtcgagatagacgccctcatcctgtagtgcggga                                                                                                                                                                    >  1:720567‑M1/1‑119 (MQ=255)                                                                                                                                              cGTCTTTATACGAAATCATACCGGTATCGTTATCAGTCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGactgtaaaactgttgggtggcttcaaccacggcttcaggtttaagcgcggtcgcggcgctgtcgagatagacgcccgcatcctgtagtgcgggaaact                                                                                                                                                                <  2:720557‑M1/213‑99 (MQ=255)                                                                                                                                              cGTCTTTATACGAAATCATACCGGTATCGTTATCAGTCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTACGGCAGTCTTTNTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCCAGGATATACa                                                                                                  >  1:664178/1‑275 (MQ=255)                                                                                                                                                                 aCCGGTATCGTTATCAGTCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCaa                                                                                                                                                                                                                                                             >  1:563784/1‑101 (MQ=255)                                                                                                                                                                     gTATCGTTATCAGTCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAg                                                                                                                                     >  2:653495/1‑217 (MQ=255)                                                                                                                                                                         cGTTATCAGTCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAGCCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCaaa                                                                                                                                 <  1:653504/217‑3 (MQ=255)                                                                                                                                                                             aTCAGTCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATc                                                                                                                                                                                     >  1:548152/1‑161 (MQ=255)                                                                                                                                                                                 gTCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTaa                                                                                                                                                                                 <  2:548143/161‑1 (MQ=255)                                                                                                                                                                                  tCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTc                                                                                                                                                                                                                          >  1:528902/1‑119 (MQ=255)                                                                                                                                                                                  tCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTtcatca                                                                                                                                                                                                                >  1:558182/1‑129 (MQ=255)                                                                                                                                                                                    tgtgGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTCAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCCAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGt                                                            >  1:385008/1‑275 (MQ=255)                                                                                                                                                                                      tgGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCtttt                                                                                                                                                                                                                      <  2:528894/119‑1 (MQ=255)                                                                                                                                                                                      tgGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCAtctt                                                                                                                                                                                                            <  2:558173/129‑1 (MQ=255)                                                                                                                                                                                                        gATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGactgtaaaactgttgggtggcttcaaccacggcttcagg                                                                                                                                                                                                                           >  1:70401‑M1/1‑57 (MQ=255)                                                                                                                                                                                                            gTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGactgtaaaactgttgggtggcttcaaccacggcttcaggttta                                                                                                                                                                                                                       <  2:70400‑M1/96‑44 (MQ=255)                                                                                                                                                                                                                  ccgtcATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCttt                                                                                                                                                                                                                       >  2:409903/1‑90 (MQ=255)                                                                                                                                                                                                                  ccgtcATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAAt                                                                                                                                                                                      <  1:25582/123‑1 (MQ=255)                                                                                                                                                                                                                      cATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTtca                                                                                                                                                                                                                   <  1:409910/90‑1 (MQ=255)                                                                                                                                                                                                                              tgCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGc                                                                                                                                                                                                                                             >  1:138703/1‑56 (MQ=255)                                                                                                                                                                                                                                cATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGAtt                                                                                                                                                                                             >  2:647677/1‑102 (MQ=255)                                                                                                                                                                                                                                  tCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGaa                                                                                                                                                                                                                                         <  2:138702/56‑1 (MQ=255)                                                                                                                                                                                                                                    acaTAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATtaata                                                                                                                                                                                         <  1:647686/102‑1 (MQ=255)                                                                                                                                                                                                                                     caTAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTtcatc                                                                                                                                                                                                                 >  2:36912/1‑77 (MQ=255)                                                                                                                                                                                                                                         gTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCAtct                                                                                                                                                                                                             <  1:36912/77‑1 (MQ=255)                                                                                                                                                                                                                                          ttCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAGATAATTGCGGCa                                                                                                                                                                                                                             >  1:676514/1‑60 (MQ=255)                                                                                                                                                                                                                                          ttCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTtcatca                                                                                                                                                                                                                >  1:608203/1‑73 (MQ=255)                                                                                                                                                                                                                                             gAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGAtt                                                                                                                                                                                             >  1:249258/1‑89 (MQ=255)                                                                                                                                                                                                                                              aaCCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCt                                                                                                                                                                                                                         <  2:676505/60‑1 (MQ=255)                                                                                                                                                                                                                                              aaCCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCAtctt                                                                                                                                                                                                            <  2:608194/73‑1 (MQ=255)                                                                                                                                                                                                                                               aCCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCCAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACGTTTTTAATcc  >  1:335066/1‑274 (MQ=255)                                                                                                                                                                                                                                                 cGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATtaata                                                                                                                                                                                         <  2:249253/89‑1 (MQ=255)                                                                                                                                                                                                                                                            cTCAGactgtaaaactgttgggtggcttcaaccacggcttcaggtttaagcgcggtcgcggcgctgtcgagatagacgcccgcatcctgtagtgcgggaaactgggcgcgaaactgcgcgggattaaaaacgttcatggtactcctcggcttgatgcaccgatcgtgacgcaaaattcactttgataca                                                                          >  1:83159‑M1/1‑5 (MQ=255)                                                                                                                                                                                                                                                                gactgtaaaactgttgggtggcttcaaccacggcttcaggtttaagcgcggtcgcggcgctgtcgagatagacgcccgcatcctgtagtgcgggaaactgggcgcgaaactgcgcgggattaaaaacgttcatggtactcctcggcttgatgcaccgatcgtgacgcaaaattcactttgatacaagga                                                                      <  2:83158‑M1/189‑189 (MQ=255)                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                 ATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATCAGTCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCCAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACGTTTTTAATCC  >  CP009273/2936201‑2936712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.