New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3243385	32 (0.830)	4 (0.110)	4/306	NT	10.6%	coding (344/405 nt)	yqjE	DUF1469 family inner membrane protein
	?	CP009273	= 3243599	36 (0.960)					coding (164/300 nt)	yqjK	uncharacterized protein

CGGCTGGCGGTGGTGGAGCTGGAAGAGGAAAAAGCGAATCTCTTTCAACTTTTACTGATGCTGGGCCTGACGATGCTTTTCGCTGCATTTGGTCTTATGAGCCTGATGGTGCTAATTATTTGGGCGGTTGACCCGCAATATCGCCTGAATGCGATGATTGCCACCACCGTGGTGTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGAATATGCTGCTAAGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGC  >  CP009273/3243141‑3243654                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                              cGGCTGGCGGTGGTGGAGCTGGAAGAGGAAAAAGCGAATCTCTTTCAACTTTTACTGATGCTGGGCCTGACGATGCTTTTCGCTGCATTTGGTCTTATGAGCCTGATGGTGCTAATTATTTGGGCGGTTGACCCGCAATATCGCCTGAATGCGATGATTGCCACCACCGTGGTGTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCa                                                                                                                                                                                                                                                 >  1:185929/1‑275 (MQ=255)     ttgCGGGGGTGGAGCTGGTAGAGGAAATAGCGTAGCTCTTTCAACTTTTTCTGTTGCTGGGCCTTACGATGCTTTTCGCTTCATTTTGTCTTATGAGCCTGATGGTGCTAATTATTTTGGCGGTTGACCCGCAATATCGCCTGAATGCGATGATTGCCACCACCGTGGTGTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAgc                                                                                                                                                                                                                                               <  2:185926/271‑1 (MQ=255)                            gAAAAAGCGAATCTCTTTCAACTTTTACTGATGCTGGGCCTGACGATGCTTTTCGCTGCATTTGGTCTTATGAGCCTGATGGTGCTAATTATTTGGGCGGTTGACCCGCAATATCGCCTGAATGCGATGATTGCCACCACCGTGGTGTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCTGGAGTTAGCAAACGATCGGCAGCTGCTCgaggaggaggtccggga                                                                                                                                                                                                                         >  2:187922/1‑264 (MQ=255)                                      ttctcTTTCAACTTTTACTGATGCTGGGCCTGACGATGCTTTTCGCTGCATTTGGTCTTATGAGCCTGATGGTGCTAATTATTTGGGCGGTTGACCCGCAATATCGCCTGAATGCGATGATTGCCACCACCGTGGTGTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCg                                                                                                                                                                                                             <  1:187925/273‑1 (MQ=255)                                          ctTTCAACTTTTACTGATGCTGGGCCTGACGATGCTTTTCGCTGCATTTGGTCTTATGAGCCTGATGGTGCTAATTATTTGGGCGGTTGACCCGCAATATCGCCTGAATGCGATGATTGCCACCACCGTGGTGTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATa                                                                                                                                                                                                                                                                             <  2:153048/206‑1 (MQ=255)                                                            gCTGGGCCTGACGATGCTTTTCGCTGCATTTGGTCTTATGAGCCTGATGGTGCTAATTATTTGGGCGGTTGACCCGCAATATCGCCTGAATGCGATGATTGCCACCACCGTGGTGTTGCTGCTACTGGCACTGATTGGCGGTATCTGAACGCTACGTANATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCa                                                                                                                                                                                       >  1:664415/1‑274 (MQ=255)                                                                           gCTTTTCGCTGCATTTGGTCTTATGAGCCTGATGGTGCTAATTATTTGGGCGGTTGACCCGCAATATCGCCTGAATGCGATGATTGCCACCACCGTGGTGTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAgg                                                                                                                                                                                           >  1:73174/1‑255 (MQ=255)                                                                                                       cTGATGGTGCTAATTATTTGGGCGGTTGACCCGCAATATCGCCTGAATGCGATGATTGCCACCACCGTGGTGTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCA                                                                                                                                                                                                                                                                               >  2:504152‑M1/1‑143 (MQ=255)                                                                                                           tGGTGCTAATTATTTGGGCGGTTGACCCGCAATATCGCCTGAATGCGATGATTGCCACCACCGTGGTGTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACATTGCTGCGCCATaca                                                                                                                                                                                                                                                                           <  1:504159/143‑1 (MQ=255)                                                                                                                        ttGGGCGGTTGACCCGCAATATCGCCTGAATGCGATGATTGCCACCACCGTGGTGTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGcg                                                                                                                           >  1:183784/1‑273 (MQ=255)                                                                                                                                                 cTGAATGCGATGATTGCCACCACCGTGGTGTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATa                                                                                                                                                                                                                                                                             <  2:39384/103‑1 (MQ=255)                                                                                                                                                     aTGCGATGATTGCCACCACCGTGGTGTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGGAAGGCGAAACTGCTTAGCCAGATCCAGTCACAACAGATGGAACTTTCCGCCAGTCCGCGTGAATGCCTGGAGACACCCGGCGCTTACGCTCGTCGCtc                                                                                             >  2:691275/1‑274 (MQ=255)                                                                                                                                                           tgatTGCCACCACCGTGGTGTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGAACGTCGCTGGAatat                                                                                       >  1:216827/1‑275 (MQ=255)                                                                                                                                                             atTGCCACCCCCGTGGTGTTGATGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGAATAtgc                                                                                     <  1:291285/275‑1 (MQ=255)                                                                                                                                                               tGCCACCACCGTGGTGTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATa                                                                                                                                                                                                                                                                             <  2:204637/89‑1 (MQ=255)                                                                                                                                                                          tggtgTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGTTCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGgc                                                                                                                                                                                          >  1:117836/1‑161 (MQ=255)                                                                                                                                                                          tggtgTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCgagg                                                                                                                                                                                                                                      >  1:75534/1‑117 (MQ=255)                                                                                                                                                                            gtgtTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCAaccagcgcccaggagcgcagacttagcagcatattccagcgacgatcgtaagcgcctgttgtctccagccattcacgacgactggcggaaagatccagccgttgttgctggatctggctaagcagttgcgccttacgtcgtt                                                                                                                                 >  1:269030‑M1/1‑74 (MQ=255)                                                                                                                                                                              gtTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGTTCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCaa                                                                                                                                                                                      <  2:117835/161‑1 (MQ=255)                                                                                                                                                                              gtTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCgaggagga                                                                                                                                                                                                                                  <  2:75533/117‑1 (MQ=255)                                                                                                                                                                                tgctgcTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCAaccagcgcccaggagcgcagacttagcagcatattccagcgacgatcgtaagcgcctgttgtctccagccattcacgacgactggcggaaagatccagccgttgttgctggatctggctaagcagttgcgccttacgtcgttcacg                                                                                                                             <  2:269025‑M1/216‑147 (MQ=255)                                                                                                                                                                                       aCTGGCACTGATTGGCGGTAACTGCACGCTACGTAACTCGCGTAAGTCTACGTTGCTGCGCCATCCACGCCATGAGTTAGCATACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAACGAGCAACTGCTTAGCCAGATCCATCAACAACGGCTGCATCTTTCCGCCAGTCGTCGTGAACGACTGCAGACAACAGGCGCTTACGATCGTCGCGGGCATCAGCCGCTACATCTGCCACCCTGGGCGCtc                                                           >  2:36201/1‑274 (MQ=255)                                                                                                                                                                                               tGATTGGCGGTATCTGCACGCTACGTAACTCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCNCCAGTCGTCGTGAATGGCTGGAGACAACCGGCGCTTACGATCGTCGCTGGAATCTGCTGCTAAGTCTGCGCTCCTGGGCGCTGGTTGGCAg                                                   >  1:512913/1‑275 (MQ=255)                                                                                                                                                                                                                   cTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCAaccagcgcccaggagcgcagacttagcagcatattccagcgacgatcgtaagcgcctgttgtctccagccattcacgacgactggcggaaaga                                                                                                                                                                                  >  1:701742‑M1/1‑35 (MQ=255)                                                                                                                                                                                                                   cTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTa                                                                                                                                                                               >  1:506782/1‑131 (MQ=255)                                                                                                                                                                                                                   cTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGa                                                                                                      >  1:115554/1‑204 (MQ=255)                                                                                                                                                                                                                     aCGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCg                                                                                                                                              >  2:149882/1‑162 (MQ=255)                                                                                                                                                                                                                       gTAAATCGCGTAAGTCTACGTTGCTGCGCCAaccagcgcccaggagcgcagacttagcagcatattccagcgacgatcgtaagcgcctgttgtctccagccattcacgacgactggcggaaagatcca                                                                                                                                                                              <  2:701733‑M1/128‑98 (MQ=255)                                                                                                                                                                                                                       gTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCa                                                                                                                                                                           <  2:506775/131‑1 (MQ=255)                                                                                                                                                                                                                       gTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGAtcgt                                                                                                  <  2:115553/204‑1 (MQ=255)                                                                                                                                                                                                                         aaaTCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAg                                                                                                                                          <  1:149883/162‑1 (MQ=255)                                                                                                                                                                                                                             cagccaggTCTACGGTGCTGCGCCGCACACGCCAGGAGTTAGCAAACGATCGGCAGGTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTTAATGGCTGGAGACAACAGGGGCTTACGATCGTCGCTGGAATATGCTGCTAAGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCa                     <  2:18625/268‑1 (MQ=255)                                                                                                                                                                                                                              gcgTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCga                                                                                                                                                                                                                                        >  2:160508/1‑63 (MQ=255)                                                                                                                                                                                                                              gcgTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGATCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGAATATGCTGCTAAGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCa                     <  1:691284/274‑1 (MQ=255)                                                                                                                                                                                                                              gcgTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGtcgtcg                                                                                                                                    >  1:440584/1‑163 (MQ=255)                                                                                                                                                                                                                                  aaGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCgaggag                                                                                                                                                                                                                                    <  1:160511/63‑1 (MQ=255)                                                                                                                                                                                                                                  aaGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGaa                                                                                                                                <  2:440577/163‑1 (MQ=255)                                                                                                                                                                                                                                       tACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGcaaca                                                                                                                                                               >  1:612714/1‑127 (MQ=255)                                                                                                                                                                                                                                           ttGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACgg                                                                                                                                                           <  2:612705/127‑1 (MQ=255)                                                                                                                                                                                                                                               tgcGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGAATATGCTGCTACGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATATGGACGATTc                         >  1:18625/1‑253 (MQ=255)                                                                                                                                                                                                                                                gcgcCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCGCGAGGAGGAGTACCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTTCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGAATATGCTGCTAAGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCCATCTGGACGATTCGCCATCCTAATATGCTGGTCCGc  <  1:374110/275‑1 (MQ=255)                                                                                                                                                                                                                                                  gcCAaccagcgcccaggagcgcagacttagcagcatattccagcg                                                                                                                                                                                                                                      >  2:541671‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                              CGGCTGGCGGTGGTGGAGCTGGAAGAGGAAAAAGCGAATCTCTTTCAACTTTTACTGATGCTGGGCCTGACGATGCTTTTCGCTGCATTTGGTCTTATGAGCCTGATGGTGCTAATTATTTGGGCGGTTGACCCGCAATATCGCCTGAATGCGATGATTGCCACCACCGTGGTGTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGAATATGCTGCTAAGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGC  >  CP009273/3243141‑3243654

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.