New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3387786	31 (0.810)	6 (0.160)	6/306	NT	14.8%	coding (1832/3801 nt)	yhdP	DUF3971‑AsmA2 domains protein
	?	CP009273	= 3388496	39 (1.040)					coding (1122/3801 nt)	yhdP	DUF3971‑AsmA2 domains protein

ATTACGCAGCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCGCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCAAGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGGCAAACTTCGCGTTGCGCAGCGGCACCAGCACTTCAAACTGACCTTCGTTGTGTTTATAGGGGAAGAGTTGCGGATTGCCACCATAAACCAGCGTCGCGTTATCCGCTTCACCGCCCTGAATCGCGCCACTTAAGTAATCAACCAGGT  >  CP009273/3387560‑3388053                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                            attaCGCAGCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCGCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCa                                                                                                                                                                                                                             >  2:289872/1‑275 (MQ=255)     cGCAGCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCGCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTAATcaa                                                                                                                                                                                                                         >  1:421421/1‑273 (MQ=255)                ttCACTTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCGCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACcgtcgt                                                                                                                                                                                                              <  1:745/275‑1 (MQ=255)                    ccTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCGCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCa                                                                                                                                                                                                                         >  1:197490/1‑260 (MQ=255)                        tCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCGCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATaaa                                                                                                                                                                                                                     <  2:197487/260‑1 (MQ=255)                           cgGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCGCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTc                                                                                                                                                                                                    <  1:289878/274‑1 (MQ=255)                                     ttCGCCGTTCAGCGGGATATCAAGATGTAATCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCGCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAatat                                                                                                                                                                                         <  1:21657/275‑1 (MQ=255)                                                    gATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCGCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAg                                                                                                                                                                                                                                                                         >  1:33003/1‑180 (MQ=255)                                                      tatCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCGCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTCCTTTTCAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCAAGGTTAGTTAAAGCa                                                                                                                                                                        >  1:633599/1‑275 (MQ=255)                                                        tCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCGCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTa                                                                                                                                                                                                                                                                     <  2:33003/180‑1 (MQ=255)                                                                      aGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCGCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTcc                                                                                                                                                                                                   >  1:45689/1‑232 (MQ=255)                                                                          ttCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCGCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGtt                                                                                                                                                                                               <  2:45689/232‑1 (MQ=255)                                                                                  gCCGTCGAGCTGGAGTTCTTGCAGGGTCGCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGCCGTGACAAAAGTGCAGATCAATATCAAGGTTAGTTAATACAGGCCAGGCGGGCTTGATGGCGAAcacc                                                                                                                                             >  2:218884/1‑271 (MQ=255)                                                                                   ccGTCGAGCTGGAGTTCTTGCAGGGTCGCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCAAGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAATGAAACGTcgc                                                                                                                                           >  2:38057/1‑275 (MQ=255)                                                                                                            tCGCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCCTCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCAAGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGGGACACTTCGCGTTGCGGCACGGCACCCGccttcct                                                                                                                  >  2:171659/1‑269 (MQ=255)                                                                                                                    gaagaATCTGTGAGCGGTGTCTCAAAAAAGTAAGGGCCAACTGCTTTACCCGGACCTTTAATGTCATCGTCAATCAGCCGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCAAGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGGCAAACTTCGCGTTGCGCAGCGGCACCAGCACTTCAAACTGAc                                                                                                           <  2:633590/272‑1 (MQ=255)                                                                                                                    agagAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAAc                                                                                                                                                                                                                    >  2:83689/1‑169 (MQ=255)                                                                                                                        aaTCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACcgtc                                                                                                                                                                                                                <  1:83690/169‑1 (MQ=255)                                                                                                                              tCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCGATAAACCGTCGTTAATAAAGTCCAGTTCAATATc                                                                                                                                                                                        >  1:641992/1‑187 (MQ=255)                                                                                                                                  cGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCAAgg                                                                                                                                                                                    <  2:641983/187‑1 (MQ=255)                                                                                                                                                         cAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGt                                                                                                                                                                                                                                  >  1:560934/1‑118 (MQ=255)                                                                                                                                                         cAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGt                                                                                                                                                                                                                                  >  1:172202/1‑118 (MQ=255)                                                                                                                                                             ggCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTc                                                                                                                                                                                                                              <  2:172199/118‑1 (MQ=255)                                                                                                                                                             ggCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTGGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTc                                                                                                                                                                                                                              <  2:560925/118‑1 (MQ=255)                                                                                                                                                                 ttACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGcaagattaacactctggcgctggatatcccgcttcag                                                                                                                                                                                                                                        >  1:320074‑M1/1‑67 (MQ=255)                                                                                                                                                                     ccGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGcaagattaacactctggcgctggatatcccgcttcaggcgg                                                                                                                                                                                                                                    <  2:320068‑M1/104‑42 (MQ=255)                                                                                                                                                                           cTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCAAGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGGCAAACTTCGCGTTGCGCAGCGGCACCAGCACTTCAAACTGACCTTCGTTGTGTTTATAGGGGAAGAGTTGCGGATTGCCACCATAAACCAGCGTcgcg                                                   <  1:38057/275‑1 (MQ=255)                                                                                                                                                                             ttAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACcg                                                                                                                                                                                                                  >  2:270944/1‑114 (MQ=255)                                                                                                                                                                                 tGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACcgtcgt                                                                                                                                                                                                              <  1:270949/114‑1 (MQ=255)                                                                                                                                                                                     aGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGcaagattaacactctggcgctggatatcccgcttca                                                                                                                                                                                                                                         >  2:147808‑M1/1‑47 (MQ=255)                                                                                                                                                                                         tCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGcaagattaacactctggcgctggatatcccgcttcaggcg                                                                                                                                                                                                                                     <  1:147809‑M1/83‑41 (MQ=255)                                                                                                                                                                                                 cagTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGcaagattaacactctggcgctggatatcccgcttcaggcggcagacaagacccgttttcaggcatcgtggagcgatctggcctggaagcaatggaaattattaccgggtgcggaa                                                                                                                                                          >  2:493987‑M1/1‑35 (MQ=255)                                                                                                                                                                                                     ttttCTTTTGAGTAGTCAGGGATCACTGCGGcaagattaacactctggcgctggatatcccgcttcaggcggcagacaagacccgttttcaggcatcgtggagcgatctggcctggaagcaatggaaattattaccgggtgcggaacact                                                                                                                                                      <  1:493994‑M1/150‑120 (MQ=255)                                                                                                                                                                                                                       gggATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCAAGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGGCAAACTTCGCGTTGCGCAGCGGCACCAGCACTTCAAACTGACCTTCGTTGTGTTTATAGGGGAAGAGTTGCGGATTGCCACCATAAACCAGCGTCGCGTTATCCGCTTCACCGCCCTGAATCGCGCCACTTAAGTAATCAAc       <  1:171662/275‑1 (MQ=255)                                                                                                                                                                                                                        ggATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAANTCCAGTTCNATATCAAGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGGCAAACTTCGCGTTGCGCAGCGGCACCAGCACTTCAAACTGACCTTCGTTGTGTTTATAGGGGAAGAGTTGCGGATTGCCACCATAAACCAGCGTCGCGTTATCCGCTTTACCGCCCCGAATCGCGCCACTTAAGTAATCAAcc      <  1:468676/275‑1 (MQ=255)                                                                                                                                                                                                                         gATCACTGCGGTAAGATTACTCGCGCGCACGCCGGCCAGATTAACGCCATCGGTTTTCATCCATAAACCGACGTTAATAAAGTCCAGTTCAATATCAAGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGGCAAACTTCGCGTTGCGCAGCGGCACCAGCTCTTCAAACTGACCTTCGTTGTTNTTATAGGGNAAGAGTTGCGGATTGCCACCATAAACCAGCGTCGCGTTATCCGCTTCACCGCCCTGAAACGCGCCCCCTAAGTAAtacaca      >  1:479847/1‑269 (MQ=255)                                                                                                                                                                                                                            cACTTCTGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCAAGGCTAGTTAATGCAGGCCAGTCCGGCTGGAAGGCAAACTTCGCGTTGCGCAGCGGCACCAGCACTTCAAACTGACCTTCGTTGTGTTTATAGGGGAAGAGTTGCGGATTGCCACCATAAACCAGCGTCGCGTTATCCGCTTCACCGCCCTGAATCGCGCCACTTAAGTAATCAACCAGGt  <  1:404548/275‑1 (MQ=255)                                                                                                                                                                                                                             aCTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAg                                                                                                                                                                                                 >  1:344597/1‑83 (MQ=255)                                                                                                                                                                                                                                 cGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCa                                                                                                                                                                                             <  2:344591/83‑1 (MQ=255)                                                                                                                                                                                                                                   gcaagattaacactctggcgctggatatcccgcttcaggcggcagacaagacccgttttcaggca                                                                                                                                                                                                             <  1:415802‑M1/65‑65 (MQ=255)                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                            ATTACGCAGCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCGCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCACGCCGCCCAGATTAACGCCATCGGTTTTCATCCATAAACCGTCGTTAATAAAGTCCAGTTCAATATCAAGGTTAGTTAATGCAGGCCAGTCCGGCTGGAAGGCAAACTTCGCGTTGCGCAGCGGCACCAGCACTTCAAACTGACCTTCGTTGTGTTTATAGGGGAAGAGTTGCGGATTGCCACCATAAACCAGCGTCGCGTTATCCGCTTCACCGCCCTGAATCGCGCCACTTAAGTAATCAACCAGGT  >  CP009273/3387560‑3388053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.