New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3735261 =	44 (1.140)	11 (0.310)	7/288	NT	21.9%	coding (632/849 nt)	yiaJ	transcriptional repressor of yiaK‑S operon
	?	CP009273	3735587 =	38 (1.080)					coding (306/849 nt)	yiaJ	transcriptional repressor of yiaK‑S operon

TACTGCTTTGATCCAACGAAGGAAATGTTAAAGTTTTGGCACTTGTCCAAAGCGTTATGTGATCGCGCCCAGGTCATCCCTGACAGTAAATCCCAGTTCATTAGAAATAGCCTGCGCGGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGAACAGTAGAGCGGCATATGCTGGCCAATATAGGCACGGGTTCGCAGCATCCCGGTTGTGGGTTCCAGCTTATAAATCAAAATAGCGTGATCGTCTTCGC  >  CP009273/3734990‑3735522                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                      gatggcgcaggaaaaagagcgtccagccggaagccagagtctgtttcgcgggttgatgctgattgagattttgagcaactatccaaacggttgtccgttggcgcatctttcggagctggctggtttaaataagagtaccgtccatcgctggttgcagggattacagtcctgcggctatgtgaccaccgcgcctgccgcagggagttatcgcctgaccacccaatttattgccgacgggcagaaggcgctgtcttcgctgaatatcattcaaATcg                                                                                                                                                                                                                                                                    <  1:567512‑M1/4‑1 (MQ=255)  atggcgaaggaaaangtgcggccggaaggaagccatggtttgtttcgcgggttgatgctgattgtgattttgagcaactatccaaacggttggccgttggcgcatctttcggagctggctggtttaaataagagtaccgtccatcgcttattgcagggattacagtcctgcggctatgtgaccaccgcgcctgccgcagggagttatcgcctgaccaccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatATcgc                                                                                                                                                                                                                                                                   >  2:528619‑M1/271‑275 (MQ=255)                            ttAAAGTTTTGGCACTTGTCCAAAGCGTTATGTGATCGCGCCCAGGTCATCCCTGACAGTAAATCCCAGTTCATTAGAAATAGCCTGCGCGGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCa                                                                                                                                                                                                                                         <  1:186496/275‑1 (MQ=255)                                        cACTTGTCCAAAGCGTTATGTGTTCGCGCCCAGGTCATCCCTGACAGTAAATCCCAGTTCATTAGAAATAGCCTGCGCGGTTTCACGCAGTGGTTTCTGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACa                                                                                                                                                                                                                             <  1:370625/275‑1 (MQ=255)                                          cTTGTCCAAAGCGTTATGTGCTCGCGCCAAGGGTATCCCTGACAGTAAATCCCAGTTAATTAGAAATAGCCTGCGCGGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCGCCGGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACa                                                                                                                                                                                                                             <  1:150205/273‑1 (MQ=255)                                                      gTTATGTGATCGCGCCCAGGTCATCCCTGACAGTAAATCCCAGTTCATTAGAAATAGCCTGCGCGGTTTCACGCAGTGGTTTCAGGAGATNTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTc                                                                                                                                                                                                                <  1:491073/274‑1 (MQ=255)                                                              attgagattttgagcaactatccaaacggttgtccgttggcgcatctttcggagctggctggtttaaataagagtaccgtccatcgcttattgcagggtttacagtcctgcggctatgtgaccaccgcgcctgccgcagggagttatcgcctgaccaccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatATcgccgc                                                                                                                                                                                                                                                                <  1:46753‑M1/8‑1 (MQ=255)                                                              attgagattttgagcaactatccaaacggttgtccgttggcgcatctttcggagctggctggtttaaataagagtaccgtccatcgcttattgcagggattacagtcctgcggctatgtgaccaccgcgcctgccgcagggagttatcgcctgaccaccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatATCGCCGCTCCGCTTTCACGAATGTgc                                                                                                                                                                                                                                             <  1:235964‑M1/27‑1 (MQ=255)                                                                 gcgcCCAGGTGATCCCTGACAGTAAATCCCAGTTCATTAGAAATAGCCTGCGCGGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAACTCGACACGGCGTACGGCACCCGCCCATGACTATCAAACACCGGTACAGCAATACAGGAGACGCCGAGTTCGTTTCCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCCCGGGCATCTAGGTAAtagg                                                                                                                                                                                                       >  1:708344/1‑269 (MQ=255)                                                                  agattttgagcaactatccaaacggttgtccgttggcgcatctttcggagctggctggtttaaataagagtaccgtccatcgcttattgcagggattacagtcctgcggctatgtgaccaccgcgcctgccgcagggagttatcgcctgaccaccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatATCGccgctccg                                                                                                                                                                                                                                                            >  2:46753‑M1/207‑218 (MQ=255)                                                                  agattttgagcaactatccaaacggttgtccgttggcgcatctttcggagctggctggtttaaataagagtaccgtccatcgcttattgcagggattacagtcctgcggctatgtgaccaccgcgcctgccgcagggagttatcgcctgaccaccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatATCGCCGCTCCGCTTTCACGAATGTGCGCCa                                                                                                                                                                                                                                         >  2:235959‑M1/207‑237 (MQ=255)                                                                                         ggttgtccgttggcgcatctttcggagctggctggtttaaataagagtaccgtccatcgcttattgcagggattacagtcctgcggctatgtgaccaccgcgcctgccgcagggagttatcgcctgaccaccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatATcgccgc                                                                                                                                                                                                                                                                <  2:316631‑M1/8‑1 (MQ=255)                                                                                             gtccgttggcgcatcgttcggagctggctggtttaaataagagtaccgtccatcgcttattgcagggattacagtcctgcggctatgtgaccaccgcgcctgccgcagggagttatcgcctgaccaccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatATCGccgctccg                                                                                                                                                                                                                                                            >  1:316637‑M1/180‑191 (MQ=255)                                                                                                 ttCATTAGAAATAGCCTGCGCGGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGCGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGCTCTCATGCTGagg                                                                                                                                                                      >  2:193162/1‑271 (MQ=255)                                                                                                      ttgAAATAGCCTTCGCGGTTTCACTCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTcc                                                                                                                                                               <  1:64717/273‑1 (MQ=255)                                                                                                      taccaaTTGCCTGNNCGGTTTCACGAAGTGGTTTCAGGGTATTTTTCTCTCCCACCTGTTTCAGACTTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTcc                                                                                                                                                               <  2:514976/271‑1 (MQ=255)                                                                                                      tAGAAATAGCCTTCGCGGTTTCACGCAGTTGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTcc                                                                                                                                                               <  1:279690/275‑1 (MQ=255)                                                                                                      tAGAAATAGCCTGCGCGGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTACGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAAAGGCTGGATCTCATGCTGATGGCTTTcc                                                                                                                                                               >  1:675997/1‑275 (MQ=255)                                                                                                              gCCTGCGCGGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGa                                                                                                                                                                                   >  2:103322/1‑247 (MQ=255)                                                                                                                  gcgcGGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGAtctc                                                                                                                                                                               <  1:103323/247‑1 (MQ=255)                                                                                                                   cgcgGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGccgct                                                                                                                                                                                                                                                               >  1:384228/1‑166 (MQ=255)                                                                                                                   cgcgGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCACTCCGCTTTCACGAATGTGNGCAAGTTCGTCGAACATCGCGGCCAGCTCTGTAATGGTATTGCGGGTTAACGGCGGGAAATAATGCTGATGGCTTTCCCAGTATGatgtc                                                                                                                                                   >  1:549830/1‑270 (MQ=255)                                                                                                                       gTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGccgctccgc                                                                                                                                                                                                                                                           <  2:384222/166‑1 (MQ=255)                                                                                                                                  tGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCAc                                                                                                                                                                                                                                                     >  2:182445/1‑161 (MQ=255)                                                                                                                                      ttCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAAt                                                                                                                                                                                                                                                 <  1:182448/161‑1 (MQ=255)                                                                                                                                        gaGGAGACTTTTCTCTCCCCCCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAACCACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACg                                                                                                                             <  2:675988/274‑1 (MQ=255)                                                                                                                                        cagccgaTTCTTCTCGCCCACCTGTTTCAGACGTGATGTCGACAGCGAAAGCGACACGGCGTACGGCCCCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGCGACGCCGATTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACg                                                                                                                             <  2:628734/270‑1 (MQ=255)                                                                                                                                                     tctcCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCCCGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAAGGTTATTGCGGGTTAACGGCTGGATCTAAGGCTGATGGCTTTCCACGTATGGCTTCACGTCGTGCGGGTGCCCCAACGCCATGtcggct                                                                                                                  >  2:653550/1‑268 (MQ=255)                                                                                                                                                                         cacagcctatanaacgaccgagcatgccgaagggagttatcgcctgacaaccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatAGCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGAACAGTaga                                                                                            >  2:67239‑M1/104‑275 (MQ=255)                                                                                                                                                                           aTGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACAGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTCTCACGACTGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAAAGGCTGGATCCCATGCTGATGGCTTTCCCAGTATGCATTCACGGAGTGCGGGTGACCAAAAGGCAAGTCGAACGTTCCCCTTGCGGAAcgccttgtc                                                                                          >  2:241143/1‑267 (MQ=255)                                                                                                                                                                               cGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCa                                                                                                           <  1:241148/254‑1 (MQ=255)                                                                                                                                                                                gAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTCTGACTTCACGTATTCCGGGTGACCAAACGCCATGTAGATCTTGCCCCTTGCGGAACAGTAGAGCGGcct                                                                                     >  1:258594/1‑273 (MQ=255)                                                                                                                                                                                        aaTCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGTCGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGATCATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGAACAGTAGAGCGGCATGTGCTGGc                                                                             <  1:640868/275‑1 (MQ=255)                                                                                                                                                                                         accgcgcctgccgcagggagttatcgcctgaccaccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatATCGCCGCTCCGCTTTCCCGAATGTGCGCCAGTTCGTCGACCATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGcggaacagtagagccgttccctgatac                                                                             <  1:338843‑M1/187‑14 (MQ=255)                                                                                                                                                                                         accgcgcctgccgcagggagttatcgcctgaccaccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCGCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGTTGACCAAACGCCATGTAGATCTTGCCCATTGCGCAACAg                                                                                                <  1:67240‑M1/168‑1 (MQ=255)                                                                                                                                                                                              cacGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCa                                                                                                                                 >  1:402109/1‑217 (MQ=255)                                                                                                                                                                                                  gCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACg                                                                                                                             <  2:402102/217‑1 (MQ=255)                                                                                                                                                                                                    gTACGGCACTCGACAATGAATATAATACACAGTAAAAGAAATACAGGCGACGCCGTGTTCGTTTTCTCCTCTGTCCATCGCCGCTCCGCTNTCACGAATGTGCGACAGTTTGTCGAACATCGCGGGCAGCTCGGTAATGGTAGTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGAACAGTAGAGCGGCATATGCTGGCCAATATAGGCa                                                                  <  1:556509/274‑1 (MQ=255)                                                                                                                                                                                                    gTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGAACAGTAGAGCGGCATATGCTGGCCAATATAGGCa                                                                  <  1:40813/274‑1 (MQ=255)                                                                                                                                                                                                         gCACCCGCCCATGAATATCAACCACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACg                                                                                                                             <  1:345926/210‑1 (MQ=255)                                                                                                                                                                                                               gCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCg                                                                                                                                                                                                               >  1:168900/1‑122 (MQ=255)                                                                                                                                                                                                                   cctgaccaccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatATCGCCGCTCCGCTTTCACGAATGTTCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGAAGTCCGGGTGACCACACGCCCAGTAGATCTTGCCCATTGCGGAGCAATAGAGCGGCATAAGCTGGCACATATAGGCacgggttcgtggcgtga                                                  <  2:669266‑M1/214‑9 (MQ=255)                                                                                                                                                                                                                   aTGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTaa                                                                                                                                                                                                           <  2:168897/122‑1 (MQ=255)                                                                                                                                                                                                                     tgaccaccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCAtt                                                                                                         <  1:11852‑M1/159‑1 (MQ=255)                                                                                                                                                                                                                     tgaccaccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCAtt                                                                                                         <  1:653507‑M1/159‑1 (MQ=255)                                                                                                                                                                                                                       aacaccaaatttattgccgtcgggcataaggcgctgtcttcgctgaatatcattcatATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCgg                                                                                                     >  2:4300‑M1/58‑220 (MQ=255)                                                                                                                                                                                                                         caccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCgg                                                                                                     >  2:11852‑M1/56‑218 (MQ=255)                                                                                                                                                                                                                         caccaaatttattgccgtcgggcagaaggcgctgtcttcgctgaatatcattcatATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCgg                                                                                                     >  2:653498‑M1/56‑218 (MQ=255)                                                                                                                                                                                                                                  cGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGAACAGTAGAGCGGCATATGCTGGCCAATATAGGCACGGGTTCGCAGCATCCCGGGTGTGGGTTCCa                                   >  1:107787/1‑275 (MQ=255)                                                                                                                                                                                                                                                  gagaCGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTaa                                                                                                                                                                                           >  2:44299/1‑107 (MQ=255)                                                                                                                                                                                                                                                     aCGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAAc                                                                                                                                                                                          >  2:293311/1‑105 (MQ=255)                                                                                                                                                                                                                                                      cGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGc                                                                                                                                                                                       <  1:44299/107‑1 (MQ=255)                                                                                                                                                                                                                                                       gCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGAGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGAACAGTAGAGCGGCATATGCTGGCCAATATAGGCACGGGTTCGCAGCATCCCGGTTGTGGGTTCCAGCTTATAAATCAAAATAGCg               >  1:675828/1‑274 (MQ=255)                                                                                                                                                                                                                                                         cGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCt                                                                                                                                                                                      <  1:293317/105‑1 (MQ=255)                                                                                                                                                                                                                                                            gTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTc                                                                                                                                           >  1:95575/1‑145 (MQ=255)                                                                                                                                                                                                                                                            gTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGAACAg                                                                                                >  2:245808/1‑188 (MQ=255)                                                                                                                                                                                                                                                                gTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCggg                                                                                                                                       <  2:95574/145‑1 (MQ=255)                                                                                                                                                                                                                                                                gTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGAACAGTaga                                                                                            <  1:245813/188‑1 (MQ=255)                                                                                                                                                                                                                                                                 ttttCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGt                                                                                                                                                                                                       >  2:434069/1‑80 (MQ=255)                                                                                                                                                                                                                                                                    tcttctCTTTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCATTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTNCCAGTATGACCTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGAACAGTAGAGCGGCATATGCTGGCCAATATAGGCACGGGTTCGCAGCATCCCGGTTGTGGGTTCCAGCTTATAAATCAAAATAGCGTGATCGTCTTcgc  <  1:653559/274‑1 (MQ=255)                                                                                                                                                                                                                                                                     cttctCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTg                                                                                                                                                                                                   <  1:434076/80‑1 (MQ=255)                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                      TACTGCTTTGATCCAACGAAGGAAATGTTAAAGTTTTGGCACTTGTCCAAAGCGTTATGTGATCGCGCCCAGGTCATCCCTGACAGTAAATCCCAGTTCATTAGAAATAGCCTGCGCGGTTTCACGCAGTGGTTTCAGGAGATTTTTCTCTCCCACCTGTTTCAGACGTGATGTCGAAAGCGAAATCGACACGGCGTACGGCACCCGCCCATGAATATCAAACACCGGAACAGCAATACAGGAGACGCCGAGTTCGTTTTCTTCTCTGTCCATCGCCGCTCCGCTTTCACGAATGTGCGCCAGTTCGTCGAACATCGCGGGCAGCTCGGTAATGGTATTGCGGGTTAACGGCTGGATCTCATGCTGATGGCTTTCCCAGTATGACTTCACGTAGTCCGGGTGACCAAACGCCATGTAGATCTTGCCCATTGCGGAACAGTAGAGCGGCATATGCTGGCCAATATAGGCACGGGTTCGCAGCATCCCGGTTGTGGGTTCCAGCTTATAAATCAAAATAGCGTGATCGTCTTCGC  >  CP009273/3734990‑3735522

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.