New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3780388 =	58 (1.510)	5 (0.140)	4/300	NT	8.5%	coding (191/1260 nt)	envC	activator of AmiB,C murein hydrolases, septal ring factor
	?	CP009273	3780587 =	52 (1.420)					coding (390/1260 nt)	envC	activator of AmiB,C murein hydrolases, septal ring factor

AATCCCGCAAGAGATGACTGGTAAGCCGCTGTTCATCGTGGAATAATCCCTCCCCATGAGGGGAAAGGCGATTAATACCATGACACGGGCCGTGAAACCGCGCAGGTTTGCAATCAGGCCCATCATCTACGCCAGCGTTCTTAGCGCTGGCGTATTGTTGTGCGCCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACAGATTGATGAGATGAACGCGTCGATTGCCAAACTGGAGCAGCAAAAAGCCGCCCAGGAGCGCAGCCTCGCCGCACAACTGGATGCCGCATTCCGTCAGGGCGAGCATACCGGTATTCAGCTGATTCTCAGCGGTGAAGAAAGCCAGCGTGGACAGCGTTTACAGGC  >  CP009273/3780119‑3780646                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                   ttggatggaatactccagccctgccagcgtctttttacgctcgttcagcgcctgagtcagtttcgcctgttgggcgcgctgctcatataacagcgtttgttgctcgctctgtttctcttccacttcagtacgctgcatggcgacttcttcacgcgtttgcttcaactgggcaatggtctcttgtcgcgcctggttgagatagccgaaataagcctgtaaacgctgtccacgctggctttcttcaccgctgagaatcagctgaataccggtaTGCt                                                                                                                                                                                                                                                                 >  1:637367‑M1/272‑275 (MQ=255)     ccGCAAGAGATGACTGGTAAGCCGCTGTTCATCGTGGAATAATCCCTCCCCATGAGGGGAAAGGCGATTAATACCATGACACGGGCCGTGAAACCGCGCAGGTTTGCAATCAGGCCCATCATCTACGCCAGCGTTCTTAGCGCTGGCGTATTGTTGTGCGCCTTTTCCGCCCA‑CGCGAATGAGCGTGACCAACTCAAATCCATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAACAACAAAAACGCGCAACCCTGCTCGcaca                                                                                                                                                                                                                                                           >  1:367883/1‑275 (MQ=255)     atggaagactccagccctgccagcgtctttttacgctcgttcagcgcctgagtcagtttcgcctgttgggcgcgctgctcatataacagcgtttgttgctcgctctgtttctcttccagttcagcacgctgcatggcgacttcttcacgcgtntgcttcaactgggcaatggtttcttgtcgcgcctggttgagatagccgaaataagcctgtaaacgctgtccacgctggctttcttcaccgctgagaatcagctgaataccggtaTGCTc                                                                                                                                                                                                                                                                <  1:616787‑M1/5‑1 (MQ=255)                           cGCTGTTCATCGTGGAATAATCCCTCCCCATGAGGGGAAAGGCGATTAATACCATGACACGGGCCGTGAAACCGCGCAGGTTTGCAATCAGGCCCATCATCTACGCCAGCGTTCTTAGCGCTGGCGTATTGTTGTGCGCCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGc                                                                                                                                                                                                                                      <  1:108899/274‑1 (MQ=255)                                          atttcagcgcgtgagtcagtttctgctgtgtgtctcgctgctcatataacggcgtttgttgcgcgctctgtttctcttccagttcatcacgctgcatggcgacttcttcacgcgttggcttcaacgtggcaatggtttcttgtcgcgcctggttgagatagccgaaataagcctgtaaacgctgtccacgctggctttcttcaccgctgagaatcagctgaataccggtaTGCTCGCACAATGGAAAAAGCAGGAAGAAGCGATCTCTGAAGc                                                                                                                                                                                                                          >  2:616778‑M1/231‑273 (MQ=255)                                               tccctcccCATGAGGGGAAAGGCGATTAATACCATGACACGGGCCGTGAAACCGCGCAGGTTTGCAATCAGGCCCATCATCTACGCCAGCGTGCTTAGCGCTGGCGTATTGTTGTGCGCCTTTTCCGCCCA‑CGCGGATGGGCGTGACCAACTCAAACCTATTCAGGCT‑GATATCGCCGCCAAAGACAGCGCGGTACGCCAAAACCAACACCAACCCGCAAGCCTGACGGAACAAAGGAAAAAGAAGGAAGAAGAGAACACGGANGCCaaaggtca                                                                                                                                                                                                                 >  2:65910/1‑268 (MQ=255)                                                    ccccATGAGGTGAAAGGCGATTAATACCATGACACGGGCCGTGAAACCGCGCAGGTTTGCAATCAGGCCCATCATCTACGCCAGCGTTCTTAGCGCTGGCGTATTGTTGTGCGCCTTTTCCGCCCA‑CGCGGATGAGCGTGGCCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAGAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGAACTCTGAAGCAAACCGTAAGCTgc                                                                                                                                                                                                            >  1:713138/1‑275 (MQ=255)                                                                 aaGGCGATTAATACCATGACACGGGCCGTGAAACCGCGCAGGTTTGCAATCAGGCCCATCATCTACGCCAGCGTTCTTATCGCTGGCGTATTGTTGTGCGCCTTTTCCGCCCA‑CGCGGATGAACGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCaaaa                                                                                                                                                                                               <  1:685309/275‑1 (MQ=255)                                                                                       gggCCGTGAAACCGCGCAGGTTTGCAATCAGGCCCATCATCTACGCCAGCGTTCTTAGCGCTGGCGTATTGTTGTGCGCCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCACAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCCCAAGCCTGCTCGCACAATTGAAAACGCAGGAAGAAGCGATCTCTCAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATaaa                                                                                                                                                                         >  1:679070/1‑275 (MQ=255)                                                                                            agcgtttgttgctcgctctgtttctcttgcagttcagcacgctgcatggcgacttcttcacgcgtttgcttcaactgggcaatggtttcttgtcgcgcctggttgagatagccgaaataagcctgtaaacgctgtccacgctggctttcttcaccgctgagaatcagctgaataccggtaTGCTCGCACAATTGATAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACa                                                                                                                                                                       <  1:680969‑M1/94‑1 (MQ=255)                                                                                             tGAAACCGCGCAGGTTTGCAATCAGGCCCATCATCTACGCCAGCGTTCTTAGCGCTGGCGTATTGTTGTGCGCCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCCAAAGAGCGCGCGGTACGCGCAAAGCAACAAACACGCGCAACCCTGCTCGCACAATTGAAAAGACAGGAAGAAGCGATCTATGAAGCCACCCGTAAAATGCGCGAAACGCAAAAAACGACCAAACAAATCAAAAACAAGAt                                                                                                                                                                    >  1:692414/1‑274 (MQ=255)                                                                                                                tttctctggcagttccgctcgctgcatggggacttcttcactcgtttgcttcaactgggcaatggtttctagtcgcgcctggttgagatagccgaaataagcctgtaaacgctgtccacgctggctttcttcaccgctgagaatcagctgaataccggtaTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACAGATTGATGAGATGAACGCGTc                                                                                                                                                  >  2:680960‑M1/161‑275 (MQ=255)                                                                                                                    aGGCCCATCATCTACGCCAGCGTTCTTAGCGCTGGCGTATTGTTGTGCGCCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACAGAATGATGAGATGAACGCGTCGATTGc                                                                                                                                            >  1:118144/1‑275 (MQ=255)                                                                                                                                tACGCCAGCGTTCTTAGCGCTGGCGTATTGTTGTGCGCCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCATGAAGAAGCGATCTCTGAANCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACAGATTGATGAGATGAACGCGTCGATTGCCAAAATGGagca                                                                                                                                >  1:526873/1‑275 (MQ=255)                                                                                                                                    ccAGCGTTCTTAGCGCTGGCGTATTGTTGTGCGCCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGgaaga                                                                                                                                                                                                                                         >  2:622959/1‑166 (MQ=255)                                                                                                                                       gCGTTCTTAGCGCTGGCGTATTGTTGTGCGCCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACAAGCGCAATCAACTCAATAAACAGATTGATGAGATGAAAGCGTCGATTGCCACACTTTAGCCGCaaaa                                                                                                                          >  2:36241/1‑274 (MQ=255)                                                                                                                                        cGTTCTTAGCGCTGGCGTATTGTTGTGCGCCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACAGATTGATGAGATGAACGCGTCGAATGACAAACTGGAGCAGAcaaaa                                                                                                                         >  1:38546/1‑274 (MQ=255)                                                                                                                                        cGTTCTTAGCGCTGGCGTAATGTTGTGCGCCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCg                                                                                                                                                                                                                                     <  1:622968/166‑1 (MQ=255)                                                                                                                                          ttCTTAGCGCTGGCGTATTGTTGTGCGCCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCaaaa                                                                                                                                                                                               >  1:80111/1‑202 (MQ=255)                                                                                                                                            cTTAGCGCTGGCGTATTGTTGTGCGCCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGgaag                                                                                                                                                                                                                                          >  1:200692/1‑157 (MQ=255)                                                                                                                                              tAGCGCTGGCGTATTGTTGTGCGCCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACg                                                                                                                                                                                           <  2:80110/202‑1 (MQ=255)                                                                                                                                                gcgcTGGCGTATTGTTGTGCGCCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGc                                                                                                                                                                                                                                      <  2:200689/157‑1 (MQ=255)                                                                                                                                                     ggCGTATTGTTGTGCGCCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACAGATTGATGAGATGAACGCGTCGATTGCCAAACTGGAGCAGCAAAAAGCCGCCCAGGAgcg                                                                                                           <  1:36241/275‑1 (MQ=255)                                                                                                                                                                gtgCTCCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTTCTCTCACCATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAATCTGCGCGATACGCAAAACGCGCTCAATCCACTCAATAAACAGATTGATGAGATGAACGCGTCGATTGCCAAACTGGAGCAGCAAAAAGCCGCCCAGGAGCGCAGCCTcgccg                                                                                                <  1:60982/275‑1 (MQ=255)                                                                                                                                                                gtgCGCCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGc                                                                                                                                                                                                   >  2:698389/1‑176 (MQ=255)                                                                                                                                                                gtgCGCCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACAGATTGATGAGATGAACGCGTCGATTGc                                                                                                                                            >  1:111538/1‑231 (MQ=255)                                                                                                                                                                gtgCGCCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTAGTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGGGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTAAATAAACAGATTGATGAGATGAACGCGTCGATTGCCAAACTGGAGCAGCAAAAAGCCGCCCAGGAGCGCACCCAcgccc                                                                                                >  1:681236/1‑274 (MQ=255)                                                                                                                                                                 tgCGCCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCNACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACAGATTGATGAGATGAACACGTCGATTGCCAAACTGGAGCAACAAAAAGCCGCCCAGGAGCGCAGCCCcgc                                                                                                  >  1:596412/1‑272 (MQ=255)                                                                                                                                                                  ggccactttCGGCNCACCGCGGACCAGCGTGAACAAGTCAAAGCTATTCAGGCT‑AACATCGCCGCAAAAGAGTGCGCGTTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAACAGCAGGAAGAAGCGGTCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATCAACAGATTGATGAGATGAACGCGTCGATTGCCAAACTGGAGCAGCAAAAAGCCGCCCAGGAGCGCAGCCTcgccg                                                                                                <  2:535410/268‑1 (MQ=255)                                                                                                                                                                   cgcCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTg                                                                                                                                                                                                                              >  1:349627/1‑146 (MQ=255)                                                                                                                                                                   cgcCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAAGAAACAGATTGATGAGATGAACGCGTCGATTGCCAAACTGGAGCAGCAAAAAACCGCCCAGGAGCGCAGCCACGCCGcac                                                                                             >  1:683500/1‑275 (MQ=255)                                                                                                                                                                    gcCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCTAAACGCaaaa                                                                                                                                                                                               <  1:698398/176‑1 (MQ=255)                                                                                                                                                                    gcCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACAGATTGATGAGATGAACGCGTCGATTGccgcg                                                                                                                                        <  2:111537/231‑4 (MQ=255)                                                                                                                                                                       ttttCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGc                                                                                                                                                                                                                          <  2:349621/146‑1 (MQ=255)                                                                                                                                                                                          gtgCGTGACCAAACTAAATCTAGATAGGCTGGACA‑CGCCGCACAGTTGCTGGCGGTAAGCCTAACTCAAAGTCAAAGTGCAAGCCTGCGCGCACAAATGAAAAAGCAGGAAGAATCGATATCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTAAATAAACAGATTGATGAGATGAACGCGTCGATTGCCAAACTGGAGCAGCAAAAAGCCGCCCAGGAGCGCAGCCTCGCCGCACAACTGGATGCCGCATTCCGTCa                                                                       <  2:692405/273‑1 (MQ=255)                                                                                                                                                                                                 aCCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATctct                                                                                                                                                                                                                               >  2:22651/1‑116 (MQ=255)                                                                                                                                                                                                 aCCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACAGATTGATGAGATGAACGCGACGATTGCCAAACTGGAGCAGCAAAAAGCCGCCCAGGAGCGCAGCCTCGCCGCACAACTGGAAGCCGCATTCCGCCAGGGccc                                                                 >  2:224305/1‑272 (MQ=255)                                                                                                                                                                                                     aCTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAg                                                                                                                                                                                                                           <  1:22651/116‑1 (MQ=255)                                                                                                                                                                                                           aTCTATTCAGGCT‑GACATCGCGGCAAAAGTGCTCGCGGTACGCCAGAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGGTCTCTGAAGCCACCCGTAAGCTGCGCGAAACGc                                                                                                                                                                                                   >  1:505865/1‑134 (MQ=255)                                                                                                                                                                                                           aTCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAATGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTgcg                                                                                                                                                                                                           >  1:677583/1‑126 (MQ=255)                                                                                                                                                                                                               aTTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGaa                                                                                                                                                                                                       <  2:677574/126‑1 (MQ=255)                                                                                                                                                                                                                ttCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTgc                                                                                                                                                                                                            >  2:137896/1‑120 (MQ=255)                                                                                                                                                                                                                 tCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACAGATTGATGAGATGAACGCGTCGAGTGCCCAACTGGAGAAGCAAAAAGCCGCCCAGGAGCGCAGCCTCGCCGCACAACTGGACGCCGCATTCCGTCAGGGAGAGCAGACCNGTAtgttcc                                                >  2:268284/1‑270 (MQ=255)                                                                                                                                                                                                                    ggCT‑GACATCGCCGCAAAAGAGGGCGCGGTACGCCAAAAGCAACAACAAAGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCg                                                                                                                                                                                                                                     <  1:285196/91‑1 (MQ=255)                                                                                                                                                                                                                    ggCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGa                                                                                                                                                                                                        <  1:137897/120‑1 (MQ=255)                                                                                                                                                                                                                     gCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTg                                                                                                                                                                                                             >  2:112029/1‑114 (MQ=255)                                                                                                                                                                                                                     gCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAAAGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAATCGATCTCTGAAGCCACCCGTAAGCTGCGCGACACGCAAAACACGCTCAATCAACTCAATAAAAAGAACGATCAGATGAACGCGTCGATTGCCAACATGGAGCAGCAAAAATCAGCACAGGAGCGCAGAATCGCCGAACAAATGGACGCCACCATCCGTAAAGGCGAGACTACCGGAATTAAGCTGAt                                            >  2:662214/1‑275 (MQ=255)                                                                                                                                                                                                                          aCATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGcgcg                                                                                                                                                                                                         <  1:112030/114‑1 (MQ=255)                                                                                                                                                                                                                            aTCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACAGATTGATGAGATGAACGCGTCGATTGCCAAACTGGAGCAGCAAAAAGCCGCCCAGGAGCGCAGCCTCGCCGCACAACTGGATGCCGCATTCCGTCAGGGCGAGCATACCGGTATTCAGCTGATTCTCAg                                      <  1:224310/275‑1 (MQ=255)                                                                                                                                                                                                                               cgagcAAAAGAGCCCGAGGTAAGCCCAAAGCAACAAACACGCGCAAGCCTGCTCGCACAAGGGAAAAAGAAGGAAGAAGCGATCGCGGAAGGCACCAGTAAGCTGAGCGAAACGCAAAACACGCTCAATAAAGTGAATAAACAGAGTGATGAGATGAACGCGTCGATTGCCAAACTGGAGAAGCAAAAAGCCGCACAGGAGCGCAGCCTCGCCGCACAACTGGATGCCGCATTCCGTCAGGGCGAGCATACCGGTATTCAGCTGATTCTCAGCgg                                   <  2:48506/272‑1 (MQ=255)                                                                                                                                                                                                                                    aaaaGAGCGCGCGGTACGCCAAAAGCAATAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATaaa                                                                                                                                                                         >  1:508565/1‑136 (MQ=255)                                                                                                                                                                                                                                      aaGAGCGCGCGGTACACCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACAGATTGATGAGATGAACGCGTCGATTGCCAAACTGGAGCAGCAAAAAGCCGCCCAGGAGCGCAGCCTCGCCGCACAACTGGATGCCGCATTCCGTCAGGGCGAGCATACCGGTATTCAGCTGATTCTCAGCGGTgaagaa                            >  1:94000/1‑275 (MQ=255)                                                                                                                                                                                                                                       gctggctttcttcaccgctgagaatcagctgaataccggtaTGCt                                                                                                                                                                                                                                                                 >  1:417287‑M1/42‑45 (MQ=255)                                                                                                                                                                                                                                        gagCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACAGa                                                                                                                                                                     <  2:508558/136‑1 (MQ=255)                                                                                                                                                                                                                                            ctttcttcaccgctgagaatcagctgaataccggtaTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTg                                                                                                                                                                                                                              <  1:653779‑M1/39‑1 (MQ=255)                                                                                                                                                                                                                                                cttcaccgctgagaatcagctgaataccggtaTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGc                                                                                                                                                                                                                          >  2:653770‑M1/33‑75 (MQ=255)                                                                                                                                                                                                                                                 ggaaaccAAAAGCAACAACAACGCGCAAGCCGGCTCGCACAATTGAACAAGCAGGAAGAAGCGAGCTCTAGAGCCACCCGTAAGCTGCGCGAAACGAAAAACACGCTCAAACAACTCAATAAACAGATTGATGAGATGAACGCGTCGATTGCCAAACTGGAGCAGCAAAAAGCCGCCCAGGAGCGCAGCCTCGCCGCACAACTGGATGCCGCATTCCGTCAGGGCGAGCATACCGGTATTCAGCTGATTCTCAGCGGTGAAGAAAGCCAGCGTgg                 <  2:681227/270‑1 (MQ=255)                                                                                                                                                                                                                                                           accaacaaccaCGCGCAAGACTGCTCGCACAAATACAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGGTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACAGATTGATGAGATGAACGCGTCGATTGCCAAACTGGAGCAGCAAAAAGCCGCCCAGGAGCGCAGCCTCGCCGCACAACTGGATGCCGCATTCCGTCAGGGCGAGCATACCGGTATTCAGCTGATTCTCAGCGGTGAAGAAAGCCAGCGTGGACAGCGTTTa       <  2:231834/273‑1 (MQ=255)                                                                                                                                                                                                                                                            gCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATa                                                                                                                                                                           >  1:373977/1‑110 (MQ=255)                                                                                                                                                                                                                                                            gCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACAGATTGATGAGATGAACGCGTCGATTGCCAAACTGGAGCAGCAAAAAGCCGCCCAGGAGCGCAGACTCGCCGCACAACTgg                                                                                       >  1:402251/1‑194 (MQ=255)                                                                                                                                                                                                                                                                cagcaacGAGCAAGCCTCCTCGCACAATTGACAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACa                                                                                                                                                                       <  2:373971/107‑1 (MQ=255)                                                                                                                                                                                                                                                                caacaacGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACAGATTGATGAGATGAACGCGTCGATTGCCAAACTGGAGCAGCAAAAAGCCGCCCAGGAGCGCAGCCTCGCCGCACAACTGGATGc                                                                                   <  2:402244/194‑1 (MQ=255)                                                                                                                                                                                                                                                                caacaacGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACAGATTGATGAGATGAACGCGTCGATTGCCAAACTGGAGCAGCAAAAAGCCGCCCAGGAGCGCAGCCTCGCCGCACAACTGGATGCCGCATTCCGTCAGGGCGAGCATACCGGTATTCAGCTGATTCTCAGCGGTGAAGAAAGCCAGCGTGGACAGCGGTTACAGGc  >  1:231839/1‑275 (MQ=255)                                                                                                                                                                                                                                                                 aacaacGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGgaaga                                                                                                                                                                                                                                         >  2:522550/1‑43 (MQ=255)                                                                                                                                                                                                                                                                     acGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCg                                                                                                                                                                                                                                     <  1:522557/43‑1 (MQ=255)                                                                                                                                                                                                                                                                        cgcAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACAGATTGATGAGATGAACGCGTCGATTGCCAAACTGGAGCAGCaaaaa                                                                                                                         >  2:211544/1‑148 (MQ=255)                                                                                                                                                                                                                                                                           aaGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCtca                                                                                                                                                                                       >  1:277713/1‑83 (MQ=255)                                                                                                                                                                                                                                                                            aGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACAGATTGATGAGATGAACGCGTCGATTGCCAAACTGGAGCAGCAAAAAgccg                                                                                                                     <  1:211548/148‑1 (MQ=255)                                                                                                                                                                                                                                                                               cTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCtcaatca                                                                                                                                                                                   <  2:277708/83‑1 (MQ=255)                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                   AATCCCGCAAGAGATGACTGGTAAGCCGCTGTTCATCGTGGAATAATCCCTCCCCATGAGGGGAAAGGCGATTAATACCATGACACGGGCCGTGAAACCGCGCAGGTTTGCAATCAGGCCCATCATCTACGCCAGCGTTCTTAGCGCTGGCGTATTGTTGTGCGCCTTTTCCGCCCA‑CGCGGATGAGCGTGACCAACTCAAATCTATTCAGGCT‑GACATCGCCGCAAAAGAGCGCGCGGTACGCCAAAAGCAACAACAACGCGCAAGCCTGCTCGCACAATTGAAAAAGCAGGAAGAAGCGATCTCTGAAGCCACCCGTAAGCTGCGCGAAACGCAAAACACGCTCAATCAACTCAATAAACAGATTGATGAGATGAACGCGTCGATTGCCAAACTGGAGCAGCAAAAAGCCGCCCAGGAGCGCAGCCTCGCCGCACAACTGGATGCCGCATTCCGTCAGGGCGAGCATACCGGTATTCAGCTGATTCTCAGCGGTGAAGAAAGCCAGCGTGGACAGCGTTTACAGGC  >  CP009273/3780119‑3780646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.