New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3920304	21 (0.550)	5 (0.140)	5/292	NT	17.1%	coding (60/459 nt)	asnC	transcriptional activator of asnA; autorepressor
	?	CP009273	= 3921151	29 (0.810)					coding (637/993 nt)	asnA	asparagine synthetase A

AGATGCTGTAGTGGCCGGTTGTGTAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATGCTTCCAGGATGCCACGGTCCAGATTGTCGATCAGATAATTTTCCATAGGATTTTCTTATGCGGATTGATGATTCATTCTATTTTAGCCTTCTTTTTTAATGAATCAAAAGTGAGTTAGGCTTTTTATTGAATGATTATTGCATGTGTGTCGGTTTTTGTTGCTTAATCATAAGCAACAGGACGCAGGAGTATAAAAAATGAAAACCGCTTACATTGCCAAACAACGTCAAATTAGCTTCGTGAAA  >  CP009273/3920042‑3920562                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                   aGATGCTGTAGTGGCCGGTTGTGTAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTa                                                                                                                                                                                                                                                          <  1:588775/273‑1 (MQ=255)   aTGCTGTAGTGGCCGGTTGTGTAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCCGCTTCATTTTCTCTACTCGAACGTGAATCTTCCCCGCACTGCCGCCAAATTGTTTCGCCAGTTCGGCGTAATCGGTGCGCGCActctcctttttt                                                                                                                                                                                                                                                        >  2:588766‑M1/1‑261 (MQ=255)               tagtttGTGTAATAGGCTTCAGTGACTTCATCAAGTCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATGCTTCCAGGATGcc                                                                                                                                                                                                                                          <  2:714077/271‑1 (MQ=255)                                                                 cAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTNCATTTTCTCTACACGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATGCTTCCAGGATGCCACGGTCCAGATTGTCGATCAGATAATTTTCCATAGGATTTTCTTATg                                                                                                                                                                                           <  1:606412/272‑1 (MQ=255)                                                                     gcgGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCAcgtcgtggcgatgaccatcgctcagcttgccgccaatcccgaccaggaataccgcgccaagacccttcgctatcgcccc                                                                                                                                                                                     >  2:700653‑M1/1‑195 (MQ=255)                                                                          aGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCAcgtcgtggcgatgaccatcgctcagcttgccgccaatcccgacaaggaataccgcgccaagatctttcgctatctcccgctcacg                                                                                                                                                                               <  1:700662‑M1/275‑86 (MQ=255)                                                                                                 atatAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTg                                                                                                                                                                                                                                                                 <  2:164769/170‑1 (MQ=255)                                                                                                       tGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATGCTTCCAGGAt                                                                                                                                                                                                                                             >  1:158119/1‑184 (MQ=255)                                                                                                       tGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCACCGGACTGACGCCAAATTGTTTCGCCAGTTAGGCGTAAGCTGTGCGCGCAcgtcgtggcgatgaccatcgctaagcttgccgccaatcccgacacagaataccgcgccaagatcattcgctaacgcccgctcacgccccttgtcatcaagaacaggaaaaagag                                                                                                                                                  >  1:441957‑M1/1‑161 (MQ=255)                                                                                                           gATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATGCTTCCAGGATGCCa                                                                                                                                                                                                                                         <  2:158116/184‑1 (MQ=255)                                                                                                                     ccTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTATCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCCGTGCGCGTATTGCCCATTCATGCTTCCAGGATCCCAAGGACCAGATTGTCGATGAGATAATTTTCCATAGGATTTTCTTATGCGGATTGATGATTTATTCTATTTTAGCCTTCTTTTTTAATTAATCAAAAGTGAGt                                                                                                                                    >  1:401172/1‑275 (MQ=255)                                                                                                                      cTACGTTATAACCGAGCTGCTTTGGGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATGCTTCCAGGATGCCACGGTCCAGATTGTCGATCAGATAATTTTCCATAGGATTTTCTTATGCGGATTGATGATTCATTCTATTTTAGCCTTCTTTTTTAATGAATCAAAAGTGAGtt                                                                                                                                   <  1:715756/275‑1 (MQ=255)                                                                                                                               aaCCGAGCTGCTTCGGGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATGCTTCCAGGATGCCACGGTCCAGATTGTCGAt                                                                                                                                                                                                                        >  2:119605/1‑181 (MQ=255)                                                                                                                                   gAGCTGCTTCGGGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATGCTTCCAGGATGCCACGGTCCAGATTGTCGATCAGa                                                                                                                                                                                                                    <  1:119606/181‑1 (MQ=255)                                                                                                                                    aGCTGCTTCGGGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATGCTTCCAGGATGCCACGGTCCAGATTGTCGATCAGATAATTTTCCATAGGATTTTCTTATGCGGa                                                                                                                                                                                       >  2:607053/1‑209 (MQ=255)                                                                                                                                        gctTCGGGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATGCTTCCAGGATGCCACGGTCCAGATTGTCGATCAGATAATTTTCCATAGGATTTTCTTATGCGGATtga                                                                                                                                                                                   <  1:607062/209‑1 (MQ=255)                                                                                                                                                               gcCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATGCTTCCAGGATGc                                                                                                                                                                                                                                           >  1:525987/1‑130 (MQ=255)                                                                                                                                                                   cGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATGCTTCCAGGATGCCACg                                                                                                                                                                                                                                       <  2:525980/130‑1 (MQ=255)                                                                                                                                                                        aTGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCA                                                                                                                                                                                                                                                                    <  2:370306‑M1/96‑1 (MQ=255)                                                                                                                                                                          gaggcccGCCTGCTTCATTTTCTCTGCTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATGCTTCCAGGATGCCACGGTCCAGATTGTCGATCAGATAATTTTCCATAGGATTTTCTTATGCGGATTGATGATTCATTCTATTTTAGCCTTCTTTTTTAATGAATCAAAAGTGAGTTAGGCTTTTTATTGAATGATTATTGCATGTGTGTCGGTTTTTGTTGCTTAATc                                                                               <  2:310770/271‑1 (MQ=255)                                                                                                                                                                                                          cGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATGCTTCCAGGa                                                                                                                                                                                                                                              >  2:336831/1‑84 (MQ=255)                                                                                                                                                                                                          cGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATGCTTCCAGGATGCCACGGTCCAGATTGTCGATCAGATAATTTTCCAt                                                                                                                                                                                                         >  2:240866/1‑121 (MQ=255)                                                                                                                                                                                                              aaTCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATGCTTCCAGGATGcc                                                                                                                                                                                                                                          <  1:336837/84‑1 (MQ=255)                                                                                                                                                                                                              aaTCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATGCTTCCAGGATGCCACGGTCCAGATTGTCGATCAGATAATTTTCCATAGGa                                                                                                                                                                                                     <  1:240871/121‑1 (MQ=255)                                                                                                                                                                                                                     cccGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCAcgtcgtggcgatgaccatcgctcagcttgccgccaatcccgacaaggaataccgcgccaagatctttcgctatcgcccgctcacgccctttggcatcaagatccggataacgag                                                                                                                                                  >  2:665426‑M1/1‑51 (MQ=255)                                                                                                                                                                                                                         gACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCAcgtcgtggcgatgaccatcgctcagcttgccgccaatcccgacaaggaataccgcgccaagatctttcgctatcgcccgctcacgccctttggcatcaagatccggataacgagacag                                                                                                                                              <  1:665435‑M1/165‑119 (MQ=255)                                                                                                                                                                                                                                                     ggCGTAAGCGGTGCGCGCATAGCCCATTAATGCTTCCAGGATGCCACGGTCCAGATTGTCGATCAGATAATTTTCCATAGGATTTTCTTATGCGGATTGATGATTCATTCTATTTTAGCCTTCTTTTTTAATGAATCAAAAGTGAGTTAGGCTTTTTATTGAATGATTATTGCATGTGTGTCGGTTTTTGTTGCTTAATCATAAGCAACAGGACGc                                                               <  1:696762/216‑1 (MQ=255)                                                                                                                                                                                                                                                       cGTAAGCGGTGCGCGCATTGCCCATTAATGCTTCCAGGATGCCACGGTCCAGATTGTCGATCAGATAATTTTCCATAGGATTTTCTTATGCGGATTGATGATTCATTCTATTTTAGCCTTCTTTTTTAATGAATCAAAAGTGAGTTAGGCTTTTTATTGAATGATTTTTGCATGTGTGTCGTTTTTTGTTGCTTTATCATAAGCACCAGGACGCAGGAGTATAAATAATTAAAACCTCTTACATTGCCAAAAAACTTCAAATTATCTTctgtaaa  >  1:97883/1‑269 (MQ=255)                                                                                                                                                                                                                                                                tGCGCGCAcgtcgtggcgatgaccatcgctcagcttgccgccaatcccgacaaggaataccgcgccaagatctttcgctatcgcccgctcacgccctttggcatcaagatccggataacgagacagtaactcctggctgtgtcc                                                                                                                            >  2:13084‑M1/1‑8 (MQ=255)                                                                                                                                                                                                                                                                tGCGCGCATTGCCCATTAATGCTTCCAGGATGCCACGGTCCAGATTGTCGATCAGATAATTTTCCATAGGATTTTCTTATGCGGATTGATGATTCATTCTATTTTAGCCTTCTTTTTTAATGAATCAAAAGTGAg                                                                                                                                     >  2:113045/1‑135 (MQ=255)                                                                                                                                                                                                                                                                    cgcAcgtcgtggcgatgaccatcgctcagcttgccgccaatcccgacaaggaataccgcgccaagatctttcgctatcgcccgctcacgccctttggcatcaagatccggataacgagacagtaactcctggctgtgtacgaag                                                                                                                        <  1:13084‑M1/144‑141 (MQ=255)                                                                                                                                                                                                                                                                    cgcAcgtcgtggcgatgaccatcgctcagcttgccgccaat                                                                                                                                                                                                                               >  1:57613‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                                                    cgcATTGCCCATTAATGCTTCCAGGATGCCACGGTCCAGATTGTCGATCAGATAATTTTCCATAGGATTTTCTTATGCGGATTGATGATTCATTCTATTTTAGCCTTCTTTTTTAATGAATCAAAAGTGAGTTAg                                                                                                                                 <  1:113046/135‑1 (MQ=255)                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                   AGATGCTGTAGTGGCCGGTTGTGTAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATGCTTCCAGGATGCCACGGTCCAGATTGTCGATCAGATAATTTTCCATAGGATTTTCTTATGCGGATTGATGATTCATTCTATTTTAGCCTTCTTTTTTAATGAATCAAAAGTGAGTTAGGCTTTTTATTGAATGATTATTGCATGTGTGTCGGTTTTTGTTGCTTAATCATAAGCAACAGGACGCAGGAGTATAAAAAATGAAAACCGCTTACATTGCCAAACAACGTCAAATTAGCTTCGTGAAA  >  CP009273/3920042‑3920562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.