New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4053671 =	28 (0.730)	4 (0.110)	4/302	NT	11.6%	intergenic (+81/‑136)	typA/yihL	GTP‑binding protein/putative DNA‑binding transcriptional regulator
	?	CP009273	4053920 =	34 (0.920)					coding (114/711 nt)	yihL	putative DNA‑binding transcriptional regulator

ACATGCGTGCTTCCGGTACTGACGAAGCCGTTGTTCTGGTTCCGCCTATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAAGAGAGCTGGGAGAACTGCTGGGCATTAAACGTATGACG  >  CP009273/4053400‑4053944                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                  aCATGCGTGATGCCGTGACGGTCGAAGCCGTTGTTCTGGTTCCGCCGTTCCGCATGACTCTGGAACAATCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTAtctc                                                                                                                                                                                                                                                                                <  2:290550/275‑1 (MQ=255)   tgcgatagagttcagttgatggcgtcactgcaatcagtggcgcgagcgtctcgggaatatcgctggtacggtttttctcggtaaacccccaggaaggctctcgcccttgctcaattgcggcccgctgaaagctcgccgacagctccggactgtaattaaatcgcggctgggtcacgaaccaccccttacgatccgttcggaagattttggaatctgcctcggggttccacaacacctggaccagctgcatacgtcgaatgccaagcagtGCTccc                                                                                                                                                                                                                                                                              <  1:126358‑M1/6‑1 (MQ=255)        tGCTTCCGGTACTGACGAAGCCGTTGTTCTGGTTCCGCCTATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACAACAATGCGAGTATCACCCTtata                                                                                                                                                                                                                                                                         >  1:290556/1‑275 (MQ=255)                    tgtcGAAGCCGTTGTTCTTGTTCCGCCTATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGt                                                                                                                                                                                                                                                               <  1:130718/269‑1 (MQ=255)                    gaccGAAGATGTTGTTCGGTTACCCCCTATCCGCATGACTCTGGAACAAGCTCTTGAGTTCATCGATGATGACGAACTGGGAGAAGTGACTCCGACCTCTATACGTATTCGTAAACGTCACCTGAGTGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGt                                                                                                                                                                                                                                                               <  2:144393/270‑1 (MQ=255)                                          ccGCCTATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAATAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATATCCCTTATACGTCTGTGGTTACGTCAATAGAGAGCTTTGTcac                                                                                                                                                                                                                                       >  1:444719/1‑275 (MQ=255)                                          ccGCCTATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGAGGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAACGACGATTAATTACGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTCTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTcac                                                                                                                                                                                                                                       >  1:676444/1‑275 (MQ=255)                                              cTATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAAtt                                                                                                                                                                                                                                   <  1:384569/274‑1 (MQ=255)                                              atttCCGCATGACTTTGGAACAAGTTCTGGAGTTCATCGATGATGACGACATGGTAGAAGTGATTCCTACCTCTATCCTTATTCGTAAACGNCACCTGACGGAAAACGATCGTCGCCGCCCCACCCGCGCACCGAAAGCCGATTAATTTCTTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAAtt                                                                                                                                                                                                                                   <  1:537491/272‑1 (MQ=255)                                                 tCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTAt                                                                                                                                                                                                                                 <  1:101725/274‑1 (MQ=255)                                                               gAACAAGCTCGGGAGTTCATCGATGATGACGAACTGGTAGAAGGGACTCCCACCTCTATCCGTATTCGTACACGTCACCTGACGGAATACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATTGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACg                                                                                                                                                                                                                  <  2:665635/275‑1 (MQ=255)                                                                 aCAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATaga                                                                                                                                                                                                                                                   <  1:454149/240‑1 (MQ=255)                                                                              ttCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGGATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCt                                                                                                                                                                                                                                              >  1:684716/1‑232 (MQ=255)                                                                                  tCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGt                                                                                                                                                                                                                                          <  2:684707/232‑1 (MQ=255)                                                                                          aacagaCTGGAAGAAGTGACTCCGACCACTATCCGTATTCGTAAAAGTCACCTGACGGAAAACGATCGTCGCCTCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGgcgt                                                                                                                                                                                        <  2:106832/269‑1 (MQ=255)                                                                                                       aaGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTAtc                                                                                                                                                                                                                                                                                  <  2:580923/171‑1 (MQ=255)                                                                                                           gACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCtg                                                                                                                                                                                                                                                                   >  1:136749/1‑182 (MQ=255)                                                                                                               ccGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGt                                                                                                                                                                                                                                                               <  2:136748/182‑1 (MQ=255)                                                                                                                    ctctATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTAtc                                                                                                                                                                                                                                                                                  <  2:142037/158‑1 (MQ=255)                                                                                                                     ttgcggcccgctgaaagctcgccgacagctccggactgtaattaaatcgcggctgggtcacgaaccaccccttacgatccttacggaagattttggattctgcctcgaggttcaacaacgcctggcgcagcgtcatacgtttaatgcccagcagtTCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCa                                                                                                                                                                                                                      <  1:105570‑M1/62‑1 (MQ=255)                                                                                                                         ggcccgctgaaagctcgccgacagctccggactgtaattaaatcgcggctgggtcacgaaccaccccttacgatccttacggaagattttggattctgcctcgaggttcaacaacgcctggcgcagcgtcatacgtttaatgcccagcagtTCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACg                                                                                                                                                                                                                  >  2:105569‑M1/152‑217 (MQ=255)                                                                                                                               ttCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCATTGCGAGTATCTCACTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTAGCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCCTCTGGTTTAAACCAAAAGGAt                                                                                                                                                  >  1:705445/1‑275 (MQ=255)                                                                                                                                                aCGGAAAACCATCGTCGCCGCGCAAACCGCGAACGGAAAGACGTTTAATTTCTTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCACTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGgaga                                                                                                                                  <  2:705435/274‑1 (MQ=255)                                                                                                                                                      aaCGATCGTCGCCGCGCCAACCGCGCACTGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCNTACGCCGTTAATTGCTTTCTTTTTTTGCGTAAGCGTAAGATGCTTCACTTGGTTTAAACCAAAAGGATTAAACAATGGCGGAAaatcaat                                                                                                                            >  1:522391/1‑274 (MQ=255)                                                                                                                                                          aTCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCtg                                                                                                                                                                                                                                                                   >  1:698360/1‑135 (MQ=255)                                                                                                                                                              tcgCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGt                                                                                                                                                                                                                                                               <  2:698351/135‑1 (MQ=255)                                                                                                                                                                      taaaactctcaacGAAAGACTATTAATTTCGTTTTTTATGCATAAAAACCCTGCCAGCGATGGCAGGTTTATTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCa                                                                                                           <  2:676435/263‑1 (MQ=255)                                                                                                                                                                               accagAAATATGAGTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCATGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGaaa                                                                                                  <  1:256179/271‑1 (MQ=255)                                                                                                                                                                                      caccccttacgatccttacggaagattttggattctgcctcgaggttcaacaacgcctggcgcagcgtcatacgtttaatgcccagcagtTCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAAt                                                                                                                                                                                                          <  1:598871‑M1/74‑1 (MQ=255)                                                                                                                                                                                          gATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTc                                                                                                                                                                                                                                                                     >  2:283073/1‑101 (MQ=255)                                                                                                                                                                                          ccttacgatccttacggaagattttggattctgcctcgaggttcaacaacgcctggcgcagcgtcatacgtttaatgcccagcagtTCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGct                                                                                                                                                                                                      >  2:598862‑M1/87‑164 (MQ=255)                                                                                                                                                                                              aaTTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCtgtg                                                                                                                                                                                                                                                                 <  1:283078/101‑1 (MQ=255)                                                                                                                                                                                                                           ccAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTg                                                                                                                                                                                            >  1:401040/1‑141 (MQ=255)                                                                                                                                                                                                                               cGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGgcgt                                                                                                                                                                                        <  2:401033/141‑1 (MQ=255)                                                                                                                                                                                                                                                                 acacCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTc                                                                                                                                                                                                                                                         >  1:605356/1‑42 (MQ=255)                                                                                                                                                                                                                                                                     cAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATa                                                                                                                                                                                                                                                     <  2:605347/42‑1 (MQ=255)                                                                                                                                                                                                                                                                               aTCTCCCTTATAAGTCAGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGNTCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAAGAGAGCTGGGAGAACAGATGGGCATTAAACGTATGACg  >  1:513986/1‑275 (MQ=255)                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                  ACATGCGTGCTTCCGGTACTGACGAAGCCGTTGTTCTGGTTCCGCCTATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAAGAGAGCTGGGAGAACTGCTGGGCATTAAACGTATGACG  >  CP009273/4053400‑4053944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.