New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4173774	40 (1.040)	7 (0.190)	5/294	NT	17.8%	coding (2602/4029 nt)	rpoB	RNA polymerase, beta subunit
	?	CP009273	= 4174600	27 (0.750)					coding (3428/4029 nt)	rpoB	RNA polymerase, beta subunit

GTTGAACGTGGCGACGTGCTGGCAGACGGTCCGTCCACCGACCTCGGTGAACTGGCGCTTGGTCAGAACATGCGCGTAGCGTTCATGCCGTGGAATGGTTACAACTTCGAAGACTCCATCCTCGTATCCGAGCGTGTTGTTCAGGAAGACCGTTTCACCACCATCCACATTCAGGAACTGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACGTTAAAGACTCTTCTCTGCGCGTACCAAACGGTGTATCCGGTACGGTTATCGACGTTCAGGTCTTTACTCGCGATGGCGTAGAAAAAGACAAACGTGCGCTGGAAATCGAAGAAATGCAGCTCAAACAGGCGAAGAAA  >  CP009273/4173501‑4174046                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                 gTTGAACGTGGCGACGTGCTGGCAGACGGTCCGTCCACCGACCTCGGTGAACTGGCGCTTGGTCAGAACATGCGCGTAGCGTTCATGCCGTGGAATGGTTACAACTTCGAAGACTCCATCCTCGTATCCGAGCGTGTTGTTCAGGAAGACCGTTTCACCACCATCCACATTCAGGAACTGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATc                                                                                                                                                                                                                                                                                 <  1:34738/275‑1 (MQ=255)       gggggggaggttcNGGCCGACGGTAGGTCCACCGTCCTCGGTGCACTGGGGCTTGGTCAGAACTTGCGTGTAGCGTTCCTGTCGTGGAATGGTTACAACTTCGCAGACGCCATCCTCGTATTCGGGGGTGTTGTTCAGGAAGACCGTTTCACCACCATCCACCTTCAGGAACTGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGCAATAGATCACCGCTGACCTCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTa                                                                                                                                                                                                                                                                            <  2:525306/262‑1 (MQ=255)                                                                 cgAACATGCGCGTCGCGTTCCTGCCGTGGAATGGTTACCTCTTCGACGACTCCATCCTCGTATCCGAGCGTTTTGTTCATGAAGACCGTTTCACCACCATCCCCATTCAGGAACTGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCg                                                                                                                                                                                                                 <  2:667682/274‑1 (MQ=255)                                                                       tGCGCGTAGCGTTCATGCCGTGGAATGGTTACAACTTCGAAGACTCCATCCTCGTATCCGAGCGTGTTGTTCAGGAAGACCGTTTCACCACCATCCACATTCAGGAAATGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCAGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGAGGAAGTGACCGGTGGCGAACTTCTGGTGGGTAAGGTAAAGACGAAAgg                                                                                                                                                                                                            >  1:432905/1‑274 (MQ=255)                                                                       tGCGCGTAGCGTTCATGCCGTGGAATGGTTACAACTTCGAAGACTCCATCCTCGTATCCGAGCGTGTTGTTCAGGAAGACCGTTTCACCAACACCCATATTCAGGCACTGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGCGATCACCGCTGACATCCCTAACGTGGGTGAAGCTGCGCTCACCAAACTGGATGAATtcgcgcagtttcgcgacttcttgctgctgtttaagcctggcgttgatcttgtcgcgggtaccttttgctgc                                                                                                                                                                                                           >  2:300626‑M1/1‑204 (MQ=255)                                                                           cgTAGTGTTCATGCCGTGGAATTGTTACAACTTCGAAGACTCCATCCTCGTATCCGAGCGTGTTGTTCAGGAAGACCGTTTCACCACCATCCACATTCAGGAACTGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATtcgcgcagtttcgcgacttctttctgctgtttcagcatggcgttgatcttgtcgccgatacctgt                                                                                                                                                                                                                 <  1:300632‑M1/265‑66 (MQ=255)                                                                                           tGGAATGGTTACAACTTCGAAGACTCCATCCTCGTATCCGAGCGTGTTGTTCAGGAAGACCGTTTCACCACCATCCACATTCAGGAACTGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGATATCCCGAACGTAGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTCACATTGATGCGGAAGTGACCGGTGGGGACATTCTGTTTGGTAAGGTGACGGCGAACAGTAAAACTCAGCTGAcccccg                                                                                                                                                                                        >  1:696870/1‑272 (MQ=255)                                                                                                                 aCTCCATCCTCGTATCCGAGCGTGTTGTTCAGGAAGACCGTTTCACCACCATCCACATTCAGGAACTGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGa                                                                                                                                                                   >  2:328460/1‑273 (MQ=255)                                                                                                                    ccATCCTCGTATCCGAGCGTGTTGTTCAGGAAGACCGTTTCACCACCATCCACATTCAGGAACTGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTc                                                                                                                                                              <  1:328466/275‑1 (MQ=255)                                                                                                                                  gAGCGTGTTGTTCAGGAAGACCGTTTCACCACCATCCACATTCATGCACTGGCGCTTGTGTCCCGTGCCACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGGGTGTGAAGCTGCGCTCTCAAAATTGCCTGATTCCGGTATCGTTTACATTGGTGCGGCAGTGCCCGGTGTCGACATCATGGTTGGTAAGGTAACGCCGAAAGTTGAAACTCAGCTGACCACAGAAGACAAACTGCTGAGTGCGATCTGCGGTGAGAAAGCatc                                                                                                                                                >  1:133823/1‑275 (MQ=255)                                                                                                                                   aGCGTGTTGTTCAGGAAGACCGTTTCACCACCATCCACATTCAGGAACTGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCTAAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCct                                                                                                                                                 >  1:31448/1‑273 (MQ=255)                                                                                                                                    gCGTGTTGTTCAGGAAGACCGTTTCACCACCATCCACATTCAGGAACTGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGGGAGACAGCCTCTg                                                                                                                                              >  1:248521/1‑275 (MQ=255)                                                                                                                                            gtCAGGAAGACCGTTTCAACATCATTCTCATTCAGGAACTTGCGGGTGTGTCTTGTGACACCAAGCTGGGTCCGGAAGAGATCACCGATGNCATACCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATTGTTTACATTGGTGCGGAAGTGACCGGGGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACGCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACGTTaa                                                                                                                                       <  1:532272/273‑1 (MQ=255)                                                                                                                                                 gAAGACCGTTTCACCACCATCCACATTCAGGAACTGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTTGGTTAAGCTGCGCTCTCCAAACTGGCTGAATCCGGTAt                                                                                                                                                                                                                                                                           >  2:165901/1‑137 (MQ=255)                                                                                                                                                     aCCGTTTCACCACCATCCACATTCAGGAACTGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGtt                                                                                                                                                                                                                                                                       <  1:165904/137‑1 (MQ=255)                                                                                                                                                         tttCACCACCATCCACATTCAGGAACTGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATtcgcgcagtttcgcgacttcttgctgctgttccagcatggcgttgatcttgtcgccgatacctttcgcagccatccccaggtgggtttcgaggatctgaccgaagttcatacgataccgtacgcccatcgggttcagtnncatgtctaccgtc                                                                                                                         >  2:514909‑M1/1‑122 (MQ=255)                                                                                                                                                             accaccATCCACATTCAGGAACTGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACNTCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATtcgcgcagtttcgcgacttcttgctgctgtttcagcatggcgttgatcttgtcgccgatacctttcgcagccatacccaggtgggtttcgaggatctgaccgatgttcatactagacggtacgcccagcgggttcagtacg                                                                                                                                     <  1:514916‑M1/259‑142 (MQ=255)                                                                                                                                                                    tCCACCTTCAGGTGCTGGCGTGTGTGTCCCGTCAAACCAAGCTGGGTACGTAAGAGATCACCGCTTACATCCCGAACGTGGGTGAAGCTGCGCTCGCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACGTTAAAGACTCTTCTCTGCGCGTACCaa                                                                                                                <  1:255782/273‑1 (MQ=255)                                                                                                                                                                    tCCACATTCAGGAACTGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACGTTAAAGACTCTTCTCTGCGCGTACCAAAc                                                                                                              >  1:17543/1‑275 (MQ=255)                                                                                                                                                                         aTTCAGGAACTGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATtcgcgcagtttcgcgacttcttgctgctgtttcagcatggcgttgatcttgtcgccgatac                                                                                                                                                                                                                     >  2:477356‑M1/1‑106 (MQ=255)                                                                                                                                                                         aTTCAGGAACTGGCGTGTGTGTCCCGCGACACCACGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATtcgcgcagtttcgcgacttcttgctgctgtttcagcatggcgttgatcttgtcgccgatac                                                                                                                                                                                                                     >  1:467351‑M1/1‑106 (MQ=255)                                                                                                                                                                            cAGGAACTGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGNTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACGTTAAAGACTCTTCTCTGCGCGTACCAAACGGTGTATc                                                                                                      >  1:520968/1‑275 (MQ=255)                                                                                                                                                                             aGGAACTGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATtcgcgcagtttcgcgacttcttgctgctgtttcagcatggcgttgatcttgtcgccgataccttt                                                                                                                                                                                                                 <  1:477363‑M1/167‑66 (MQ=255)                                                                                                                                                                                  cTGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGANGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACGTTAAAGACTCTTCTCTGCGCGTACCAAACGGTGTATCCGGTAc                                                                                                <  1:609217/275‑1 (MQ=255)                                                                                                                                                                                     gCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCtgcg                                                                                                                                                                        >  1:373148/1‑200 (MQ=255)                                                                                                                                                                                        tgggtggCCCGGGACACCAAGCTGGTTCCGGAAGGGATCACCGCGGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACGGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGGGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACGTTAAAGACTCTTCTCTGCGCGTACCAAACGGTGTATCCGGTACGGTTAt                                                                                          <  2:17543/272‑1 (MQ=255)                                                                                                                                                                                         gtgtgtCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCtgcgtgcg                                                                                                                                                                    <  2:373142/200‑1 (MQ=255)                                                                                                                                                                                          tgtgtCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAAc                                                                                                                                                                                                                     >  2:30959/1‑150 (MQ=255)                                                                                                                                                                                              tCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCg                                                                                                                                                                                                                 <  1:30959/150‑1 (MQ=255)                                                                                                                                                                                                 cgaaaacccAAGTGGGGGCCAGAAGAATTCCCCCCTGACCTGCCAAACCTGGGGGAGGCTGCGATCTGAAAACTGGATGATGCGTGTATGGGTTACGTTGGTGGGGAAGTGACGGTTAGCGGCATTGTGGTTGGTAAGGTAGCGCCGCAAGGTGAAACTCAGCGGACCCCACAAGAAAAACTGCTGCGTGCGTTCTTCGGTGAGAAAGCCGCTGACGTTAAAGACTCTTCTCTGCGCGTGCCGTGCGGTGTATGCGATACGGTTATCGACGtt                                                                                   <  2:628438/266‑1 (MQ=255)                                                                                                                                                                                                                 gTCCGGAAGAGATCCCCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACGTTAAAGACTCTTCTCTGCGCGTACCAAACGGTGTATc                                                                                                      >  2:132646/1‑238 (MQ=255)                                                                                                                                                                                                                    cGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACg                                                                                                                                           >  2:106922/1‑198 (MQ=255)                                                                                                                                                                                                                     ggAAGGGACCAGCGCTGACAGCCCGATCGTGGATGAAGAGGAGCGTTACTAACTGGATAGAGTCGGTATGGTTTAAGTGGGTGAGGATGGGACCGGTTGCGACATTCGGGTTGGTAAGGTAACGCGTAAAGGTGAAACGCAGCTGACCCCATAAGAAAAGCTGCTGCGTGCGATCTTCGGTGAGAAAGACTCTGACGTTAAAGACTCTGCTCTCCGCGTACCAAGCGGTGTATACGGTACGGTTATCGACGTTCAGGTGTTTACTCGCGTTGTCg                                                             <  2:248516/275‑1 (MQ=255)                                                                                                                                                                                                                     ggAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGGGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACGTTAAAGACTCTTCTCTGCGCGTACCAAACGGTGTATCCGGt                                                                                                  <  1:132647/238‑1 (MQ=255)                                                                                                                                                                                                                        agagATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACGTTaa                                                                                                                                       <  1:106923/198‑1 (MQ=255)                                                                                                                                                                                                                                   cTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCgg                                                                                                                                                                                                                                                          >  2:582909/1‑72 (MQ=255)                                                                                                                                                                                                                                       cATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCCTTTACATTGGTGCGGAAGt                                                                                                                                                                                                                                                      <  1:582918/72‑1 (MQ=255)                                                                                                                                                                                                                                           ccGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACGTTAAAGACTCTTCTCTGCGCGTACCAAACGGTGTATCCGGTACGGTTATCGa                                                                                       >  2:185235/1‑227 (MQ=255)                                                                                                                                                                                                                                               aCGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACGTTAAAGACTCTTCTCTGCGCGTACCAAACGGTGTATCCGGTACGGTTATCGACGtt                                                                                   <  1:185238/227‑1 (MQ=255)                                                                                                                                                                                                                                                  tGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTAt                                                                                                                                                                                                                                                                           >  1:90436/1‑40 (MQ=255)                                                                                                                                                                                                                                                      tGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGtt                                                                                                                                                                                                                                                                       <  2:90435/40‑1 (MQ=255)                                                                                                                                                                                                                                                               gcTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACGTTAAAGACTCTTCTCTGCGCGTACCAAACGGTGTATCCGGTACGGTTATCGACGTTCAGGTCTTTACTCGCGATGGCGTAGAAAAAGACAAACGTGCGCAGGAAATCGAAGAAATGCAGc                   >  1:63689/1‑275 (MQ=255)                                                                                                                                                                                                                                                                   tcCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGCAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACGTTAAAGACTCTTCTCTGCGCGTACCAAACGGTGTATCCGGTACGGTTAGCGACGTTCAGGTCTTTACTCGCGATGGCGTAGAAAAAGACAAACGTGCNCTCGAAATCGAAGaaagttatctcaa               >  2:475742/1‑265 (MQ=255)                                                                                                                                                                                                                                                                   tcCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACGTTaaa                                                                                                                                      >  1:84931/1‑156 (MQ=255)                                                                                                                                                                                                                                                                       aaCTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACGTTAAAGAct                                                                                                                                  <  2:84930/156‑1 (MQ=255)                                                                                                                                                                                                                                                                           ggATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACGTTAAAGACTCTTCTCTGCGCGTACCAAGCGGTGTATcc                                                                                                     >  1:483842/1‑181 (MQ=255)                                                                                                                                                                                                                                                                            gATGAATtcgcgcagtttcgcgacttcttgctgctgtttcagcatggcgttgatcttgtcgccgatacctttcgcagccatacccaggtgggtttcgaggatctgaccgatgttcatacgagacggtacgcccagcg                                                                                                                                                >  1:41947‑M1/1‑7 (MQ=255)                                                                                                                                                                                                                                                                             aTGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCct                                                                                                                                                 >  2:5582/1‑135 (MQ=255)                                                                                                                                                                                                                                                                             aTGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACGTTAAAGACTCTTCTCTGCGCGTACCAAACGGTGTATCCGGTACGGTTATCGACGTTCAGGTCTTTACTCGCGATGGCGTAGAAAAAGACAAACGTGCGCTGGAAATCGAAGAAATGCAGCTCAAACAGGCaaag     >  1:630867/1‑275 (MQ=255)                                                                                                                                                                                                                                                                                aaTtcgcgcagtttcgcgacttcttgctgctgtttcagcatggcgttgatcttgtcgccgatacctttcgcagccatacccaggtgggtttcgaggatctgaccgatgttcatacgagacggtacgcccagcgggttcagtacgatgtctaccggcgtaccgttttcatcgtaaggcatatcttcgatcgggttgatcttagaaattacacccttgttaccgtgacgacctgccatcttgtcaccaggctggatacggcgtttaaccgccagata  <  1:387050‑M1/275‑273 (MQ=255)                                                                                                                                                                                                                                                                                aaTtcgcgcagtttcgcgacttcttgctgctgtttcagcatggcgttgatcttgtcgccgatacctttcgcagccatacccaggtgggtttcgaggatctgaccgatgttcatacgagacggtacgcccagcgggtt                                                                                                                                            <  2:41947‑M1/137‑135 (MQ=255)                                                                                                                                                                                                                                                                                aaTtcgcgcagtttcgcgacttcttgctgctgtttcagcatggcgttgatcttgtcgccgatacctttcgcagccatacccaggtgggtttcgaggatctg                                                                                                                                                                                >  1:99102‑M1/1‑3 (MQ=255)                                                                                                                                                                                                                                                                                 aTCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGa                                                                                                                                             <  1:5582/135‑1 (MQ=255)                                                                                                                                                                                                                                                                                 aTCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACGTTAAAGACTGTTCTCTGCGCGTACCAAACGGTGTATCCGGTACGGTTATCGACGTTCAGGTCTTTACTCGCGATGGCGTAGAAAAAGACAAACGGGCGCTGGAAATCGAAGAAATGCAGCTAAAACAGGCGaagaaa  >  1:633430/1‑274 (MQ=255)                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                 GTTGAACGTGGCGACGTGCTGGCAGACGGTCCGTCCACCGACCTCGGTGAACTGGCGCTTGGTCAGAACATGCGCGTAGCGTTCATGCCGTGGAATGGTTACAACTTCGAAGACTCCATCCTCGTATCCGAGCGTGTTGTTCAGGAAGACCGTTTCACCACCATCCACATTCAGGAACTGGCGTGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTGACATCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACGTTAAAGACTCTTCTCTGCGCGTACCAAACGGTGTATCCGGTACGGTTATCGACGTTCAGGTCTTTACTCGCGATGGCGTAGAAAAAGACAAACGTGCGCTGGAAATCGAAGAAATGCAGCTCAAACAGGCGAAGAAA  >  CP009273/4173501‑4174046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.