New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 4245818 =69 (1.800)11 (0.300) 6/298 NT 15.2% coding (577/2424 nt) plsB glycerol‑3‑phosphate O‑acyltransferase
?CP009273 4246005 = 57 (1.560)coding (390/2424 nt) plsB glycerol‑3‑phosphate O‑acyltransferase

GTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAGCCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACGCAGCGGCGGGTTCACTTCGCCTTTTTCACGCCCCGGCGCGCGACCAAACATCACCGACACTGGCACCATCTGCACATCCAGATTTGGGTTGCTACGGTGCAAATCGAGAT  >  CP009273/4245546‑4246072
                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                               
gTTGATGCCCTGGTAACGTCGGTTCCAGGTGAAGCCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGCTTTGGCAATGGCGCGGGANGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGGCAcgc                                                                                                                                                                                                                                                               >  1:530310/1‑275 (MQ=255)
  tGATGCCCTGGTAAAGTCGGTTCAAGGTGAAGCCCAGAATACGGTCAGTCAGGCGAATCATCTCGTACGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTACTGCTGCGCTTTTTCATGGGAGCTTTTTTTGCTGCGCGCTTCATCTTCTACCGCTTTGGCACTGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACCGCAGCCAGACGTTGACGGGCCACCGGAATACGCTCCAggcgt                                                                                                                                                                                                                                                             >  2:154293/1‑274 (MQ=255)
            gTAAAGTCGGTTCGAGGTGAAGCCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCCCTTCCATCAGTGCAATCGCGTTCTGCTGCGCGTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTATACCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGCGCAGGCAAACGTAGGCCTACGTCAGCCAGAAGATGACAGGAACAGGGCATACGCGCCACGCGCGGCAGtagac                                                                                                                                                                                                                                                   >  2:113609/1‑271 (MQ=255)
                aggtgggtCCAGGTGAAGCCCAGAATACGGTCAGTCAGGCGAATCATCTTGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAg                                                                                                                                                                                                                                                <  1:139646/267‑1 (MQ=255)
                  tCGGTTCCTGGTGAAGCCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGa                                                                                                                                                                                                                                             <  1:113610/275‑1 (MQ=255)
                  gcgggtgcAGGGGAAGACCAGAATACGGTCAGTCAGGCGAATCAGCTCGTAAGAGAAATTTGCCGCAATCGCTTCCATCAGTGCAATCGCGTTCTGTTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGCGTTGGCAAGGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCg                                                                                                                                                                                                                                              <  2:83512/267‑1 (MQ=255)
                      tcaatggTGAAGCCCATAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGt                                                                                                                                                                                                                                         <  1:167431/270‑1 (MQ=255)
                                                                tcGTAAGAGAAATTCGCCGCAATCACTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTNGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATAc                                                                                                                                                                                                            >  1:507807/1‑262 (MQ=255)
                                                                       ggaAATTTGTCGCATTCTCTTCCATCATTTCTATTGCGTTCTGCTGCGCTTTTTCATGGTAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGc                                                                                                                                                                                        <  1:72523/274‑1 (MQ=255)
                                                                            ttCTCCGCATTCTCTTCCATCTGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGCTTNGGCAATGGCGCGTTAGTCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAACCGTGGGCCTACGTCAGCCAGACGTTGTCGGGCAATGTGCATACGCTCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGaa                                                                                                                                                                                   <  1:561326/275‑1 (MQ=255)
                                                                                            gccgctggaaatcgacggcacgctactgccgcgctatgtgttcattcacggcgggccgcgtgtgttcacctattacacgccgaaagaagagtctattaagctgttccacgactatctcgatttgcaccgtagcaacccaaatctggatgtgcagatggtgccagtgtcggtgatgtttggtCGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGt                                                                                                                                                                     <  2:293403‑M1/93‑1 (MQ=255)
                                                                                              cgctggaaatcgacggcacgctactgccgcgctatgtgttcattcacggcgggccgcgtgtgttcacctattacacgccgaaagaagagtctattaagctgttccacgactatctcgatttgcaccgtagcaacccaaatctggatgtgcagatggtgccagtgtcggtgatgtttggtCGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGCCGGCGAGAAACGCAAANaactgaccg                                                                                                                                                                  <  2:268512‑M1/96‑5 (MQ=255)
                                                                                                  gTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGCTTTGGCAGTGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAGCGTGGGCCTACGGCAGCCAGACGTTGCCGGGCAAAGGGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATTCGTGCCGGTGTCATCCGCCCTATGGCGGAGCGAAACGGACGGGGGGAAACGCACACAACTATcgctgcc                                                                                                                                                              >  2:692426/1‑270 (MQ=255)
                                                                                                  gTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGt                                                                                                                                                                                                                                                       >  1:220887/1‑185 (MQ=255)
                                                                                                  gTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTg                                                                                                                                                                                                                                                  >  1:391532/1‑190 (MQ=255)
                                                                                                  gTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACCCGCCACGCGCGCCAGTTTCTGAGCGCTAGTTTTATTCGGGCCGTGTTCATCCGCCATACGGCGCAGCGAAACGAACGGCGAGAAACGCACAAAAATCTcgcacacc                                                                                                                                                             >  2:680355/1‑270 (MQ=255)
                                                                                                   tGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGCCGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGTGCGATAGTGTTATCCGTGCCGTGTGCATCCCCCACACGCCGCCGCCAAAGCGACGGCGAGCAAGGGACACACCTGTCCCCACCGa                                                                                                                                                            >  2:16355/1‑275 (MQ=255)
                                                                                                      aaTCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCt                                                                                                                                                                                                                                                   <  2:220882/185‑1 (MQ=255)
                                                                                                      aaTCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCg                                                                                                                                                                                                                                              <  2:391526/190‑1 (MQ=255)
                                                                                                       ttCGCGTTCTGTTGCGCTTTTTCATGGGTGATTTTTTTGTTGCGCGCTTCATCTTCTACCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATATGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCca                                                                                                                                                        <  1:692435/274‑1 (MQ=255)
                                                                                                                  ctgcGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGttt                                                                                                                                                                                                                                       >  1:253708/1‑185 (MQ=255)
                                                                                                                      gcTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATc                                                                                                                                                                                                                                   <  2:253703/185‑1 (MQ=255)
                                                                                                                               tGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCCCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGGTCAACCGCCATACGGCGCAGCCAAACTGACGGCGAGAAACGAACAAAACGGGCGCAACCGAACCACCGTACAACGaaaaaatcccccc                                                                                                                                 >  2:160123/1‑266 (MQ=255)
                                                                                                                                     aTTTTTTTGCTGCGCGCTTCATCTTCTACCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCAcgc                                                                                                                                                                                                                                                               >  2:436631/1‑142 (MQ=255)
                                                                                                                                         ttttGCTGCGCGCTTCATCTTCTACCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACgcgcgc                                                                                                                                                                                                                                                           <  1:436638/142‑1 (MQ=255)
                                                                                                                                                 agctactcattctctACCGTCTTGACAGTCGCGCGGGAGGCGAGCGTCTTATTAAACTGATCCTGACGGACAGGCAAACGTGGGCCTAGGTCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGAGGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACGCa                                                                                                               <  2:683462/262‑1 (MQ=255)
                                                                                                                                                   ctgcgtgtgttcacctattacccgccgaaataagagtctattaagctgttccacgactatctcgatttgcaccgtagcaacccaaatctggatgtgcagatggtgccagtgtcggtgatgtttggtCGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACGCAgc                                                                                                             >  1:268517‑M1/127‑275 (MQ=255)
                                                                                                                                                   ccgcgtgtgttcacctattacacgccgaaagaagagtctattaagctgttccacgactatctcgatttgcaccgtagcaacccaaatctggatgtgcagatggtgccagtgtcggtgatgtttggtCGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACGCAgc                                                                                                             >  1:293409‑M1/127‑275 (MQ=255)
                                                                                                                                                   ccgcgtgtgttcacctattacacgccgaaagaagagtctattaagctgttccacgactatctcgatttgcaccgtagcaacccaaatctggatgtgcagatggtgccagtgtcggtgatgttgggtCGAGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACGCAgc                                                                                                             >  1:634277‑M1/127‑275 (MQ=255)
                                                                                                                                                    ggcgtgtgttcacctattacacgccgaaagaagagtctattaagctgttccacgactatctcgatttgcaccgtagcaccccaaatctggatgtgcagatggtgccagtgtcggtgatgtttggtCGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAACCATACGCAgc                                                                                                             >  1:699948‑M1/126‑274 (MQ=255)
                                                                                                                                                                cctattacacgccgaaagaagagtctattaagctgttccacgactatctcgatttgcaccgtagcaacccaaatctggatgtgcagatggtgccagtgtcggtgatgtttggtCGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCCGCGAAACTGACGGCGCGAAACGCACCAAACTGTCGCGACCGAGCCACAGTACAGCTAAAAATATCCGTACGCCGTTAACCATACGCAGCGGCGGGTTCacc                                                                                                <  2:699939‑M1/161‑2 (MQ=255)
                                                                                                                                                                aCCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTcgcg                                                                                                                                                                 >  2:189930/1‑209 (MQ=255)
                                                                                                                                                                aCCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGAc                                                                                                                                                               >  2:245108/1‑211 (MQ=255)
                                                                                                                                                                aCCGCTTTGGCAATGGCGCGGGAGGCGACCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACNGCGAGAAACGCACAAAACTGTCGCGAcc                                                                                                                                                              >  1:542375/1‑212 (MQ=255)
                                                                                                                                                                    ttacacgccgaaagaagagtctattaagctgttccacgactatctcgatttgcaccgtagcaacccaaatctggatgtgcagatggtgccagtgtcggtgatgtttggtCGCGCGCCAGTTTCTGAGCGATAGTTTTATCTGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAGAACTGTCGCGACCGAGCCACAGTAACGCGAAAAATTTCTGTACGCCGTTAAGCATACGCAgcagccggtttaccggtc                                                                                            <  1:697781‑M1/165‑9 (MQ=255)
                                                                                                                                                                    cTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTg                                                                                                                                                                                                                                                  >  2:209847/1‑124 (MQ=255)
                                                                                                                                                                    cTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGa                                                                                                                                                                                                                                                 >  2:486514/1‑125 (MQ=255)
                                                                                                                                                                    cTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAg                                                                                                                                                           <  1:245113/211‑1 (MQ=255)
                                                                                                                                                                    cTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGAAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCg                                                                                                                                                             <  1:189933/209‑1 (MQ=255)
                                                                                                                                                                    cTTTGGAAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGAGCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCg                                                                                                                                                             <  1:221012/209‑1 (MQ=255)
                                                                                                                                                                    cTTTGGAAATGGCGCGGGAGGCGAGCAGCTTATAAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGGAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACGGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGt                                                                                                                           <  1:643420/243‑1 (MQ=255)
                                                                                                                                                                        ggCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCg                                                                                                                                                                                                                                              <  1:209851/124‑1 (MQ=255)
                                                                                                                                                                        ggCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGa                                                                                                                                                                                                                                             <  1:486521/125‑1 (MQ=255)
                                                                                                                                                                         cgccgaaagaagagtctattaagctgttccacgactatctcgatttgcaccgtagcaacccaaatctggatgtgcagatggtgccagtgtcggtgatgtttggtCGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGTCACAGTACAGAGAAAAATTTCTGTACGCCGTTAAGCATACGCAgc                                                                                                             >  1:444301‑M1/105‑253 (MQ=255)
                                                                                                                                                                              ggCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGATTTATCCGTGCCGTGTTCATCCGACATACGGCGCANCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATCCCCAGCGGCGGGTTCACTACGCCTTTTTCAccc                                                                                 >  1:667725/1‑272 (MQ=255)
                                                                                                                                                                               gcgcGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGtt                                                                                                                                                                                                                                                      >  2:88391/1‑109 (MQ=255)
                                                                                                                                                                               gcgcGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACGCAGCGGCGGGTTCACTTCGCCTTTTTCACGccc                                                                               <  1:160126/275‑1 (MQ=255)
                                                                                                                                                                                   gggAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTg                                                                                                                                                                                                                                                  <  1:88392/109‑1 (MQ=255)
                                                                                                                                                                                       ggcacgcagcCTATTAAACGGTTCCTGACGAGCAGGCACACGTGTGCCAACGGCAGCCAGACGTTTACGGGCAAAGTTCATACGCTCCACGCGCGCCATTTTCTGAGCGATAGTTTTTTCCGTGCCGTGTTCATCCGCCATACTGCGCAGCGAAACTGACGGCGAGAAACGCAAAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACGCAGCGGCGGGTTCACTTCGCCTTTTTCACGCCCCGgcgcg                                                                        <  1:352588/269‑1 (MQ=255)
                                                                                                                                                                                               gcTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTg                                                                                                                                                                                                                                                  >  1:553143/1‑97 (MQ=255)
                                                                                                                                                                                               gcTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACGCAGCGGCGGGTTCACTTCGCCTTTTTCACGCCCCGGCGCGCGACCaaa                                                                >  1:422354/1‑274 (MQ=255)
                                                                                                                                                                                                   attaAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCg                                                                                                                                                                                                                                              <  2:553134/97‑1 (MQ=255)
                                                                                                                                                                                                          aGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGGACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACGCAGCGGCGGGTTCACTTCGCCTTTTTCACGCCCCGGCGCGCGACCAAACATCACCGaca                                                     >  1:630710/1‑274 (MQ=255)
                                                                                                                                                                                                          aGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGc                                                                                                                              >  2:421517/1‑202 (MQ=255)
                                                                                                                                                                                                           gATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGa                                                                                                                                                                                                                                                 >  1:82857/1‑86 (MQ=255)
                                                                                                                                                                                                           gATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGa                                                                                                                                                                                                                                                 >  1:61633/1‑86 (MQ=255)
                                                                                                                                                                                                            aTCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGc                                                                                                                                                                                                                 >  2:594304/1‑117 (MQ=255)
                                                                                                                                                                                                            aTCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACg                                                                                                                               >  1:337188/1‑199 (MQ=255)
                                                                                                                                                                                                              ccTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGtc                                                                                                                          <  1:421524/202‑2 (MQ=255)
                                                                                                                                                                                                               cTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGa                                                                                                                                                                                                                                             <  2:82856/86‑1 (MQ=255)
                                                                                                                                                                                                               cTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGa                                                                                                                                                                                                                                             <  2:61632/86‑1 (MQ=255)
                                                                                                                                                                                                                tGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATa                                                                                                                                                                                                             <  1:594313/117‑1 (MQ=255)
                                                                                                                                                                                                                tGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGt                                                                                                                           <  2:337182/199‑1 (MQ=255)
                                                                                                                                                                                                                 gACGGGCAGGAAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGAAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCNGCGAAAATGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACGCAGCGGCGGGTTCACTTCGCCTTTTTCACGCCCCGGCGCGCGACCAAACATCACCGACACTGGCAcc                                             <  1:603350/275‑1 (MQ=255)
                                                                                                                                                                                                                      gCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGa                                                                                                                                                                                                                                                 >  2:349377/1‑75 (MQ=255)
                                                                                                                                                                                                                          gCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGa                                                                                                                                                                                                                                             <  1:349383/75‑1 (MQ=255)
                                                                                                                                                                                                                            tatggggggCCTACNGCAGCACAGGTTGGACGGGAAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGGGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACGCAGCGGCGGGTTCACTTCGCCTTTTTCACGCCCCGGCGCGCGACCAAACATCACCGACACTGGCACCATCTGCACATc                                  <  2:530302/269‑1 (MQ=255)
                                                                                                                                                                                                                              aCGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGa                                                                                                                                                            >  1:295017/1‑152 (MQ=255)
                                                                                                                                                                                                                               cGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCCGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACaaaa                                                                                                                                                                         >  1:162835/1‑138 (MQ=255)
                                                                                                                                                                                                                                  tggCCTCCGGCATCCTTACGTTGACGGGCAAAGTGCATCCGCCCCCCGCGCGCCAGTTTCTGAGCGATAGTTTTCTCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAACCTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACGCAGCGGCGGGTTCACTTCGCCTTTTTCACGCCCCGGCGCGCGACCAAACATCACCGACACTGGCACCATCTGCACATCCAGAtt                            <  1:318697/274‑1 (MQ=255)
                                                                                                                                                                                                                                  gggCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCca                                                                                                                                                        <  2:295011/152‑1 (MQ=255)
                                                                                                                                                                                                                                   ggCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGt                                                                                                                                                                     <  2:162832/138‑1 (MQ=255)
                                                                                                                                                                                                                                   gacagaaggCAGCAAGACGTTGAGACGTATACTGCATACCGGCCAAGCGCGCACTTTTATCTGCTTTATTTTTATCCGTGCCTTGTTCATCCGCCTTCCTGCGCAGCGAAACTGACGGAGAGAACCGCACAAAACTGTCGCGACCGAGCCAAAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCACAGCCACGTCAGAGTTCAATTAGCCTTTTCCCCTATCCGGCTCGCTGTCTATCATCAACGCAACTGTCATCATCTACACATccggttt                            <  2:34434/267‑6 (MQ=255)
                                                                                                                                                                                                                                    gCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACGCAGCGGCGGGTTCACTTCGCATTTTTCACGCCCCGGCGCGCGACCAAACATCACCGACACCGGCCCACTCTGCACATACAGAttt                           >  1:366301/1‑274 (MQ=255)
                                                                                                                                                                                                                                     caaatctggatgtgcagatggtgccagtgtcggtgatgtttggtCGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACg                                                                                                                 <  1:711709‑M1/145‑1 (MQ=255)
                                                                                                                                                                                                                                         tctggatgtgcagatggtgccagtgtcggtgatgtttggtCGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACGCAgc                                                                                                             >  2:711699‑M1/41‑189 (MQ=255)
                                                                                                                                                                                                                                          ggCAGCCAGACGTTGACGGGCAAAGTGCATACGCGACACGCGCGCCATTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACGCAGCGGAGGGTTCACTTCGCCTTTTTCACGCCCCGGCGCGCGACCAAACATCACCGACACTCGCCCCATCTCCACATCACAATTTAGGTTGc                    >  1:34434/1‑275 (MQ=255)
                                                                                                                                                                                                                                                         gACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCTTCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACGCCGCGGCGGGTTCACTTCGCCTTTTTCACGCCCCGGCGCGCGACCAACCATCACCGACACTGGCACCATCTGCAAAACCAAATATGAGTTTCTACGGTGCaaaac       >  1:225391/1‑272 (MQ=255)
                                                                                                                                                                                                                                                          aCGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACGAAGCGGCGGGTTCACTTCGACTTTTTCACGCCCCGGCACGCGACCAAACATAACCGACACTGGCACCATCAGCCAATCCAGAATTGGGTTGCTACGGTGCCAATCg      >  1:454037/1‑274 (MQ=255)
                                                                                                                                                                                                                                                             ggCAAAGTGTATATGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGAAGCGAAACTGACGGCGAGGAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACGCAGCGGCGGGTTCACTTCGCCTTTTTCACGCCCCGGCGCGCGACCAAACATCACCGACACTGGCACCATCTGCACATCCAGATTTGGGTTGCTACGGTGCAAATCGAGAt  <  1:404594/275‑1 (MQ=255)
                                                                                                                                                                                                                                                             ggCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACGCAGCGGCGGGTTCACTTCGCCTTTTTCACGCCCCGGCGCGCGACCAAACATCACCGACACTGGCACCATCTGCACATCCAGATTTGGGTTGCTACGGTGCAAATCGAGAt  <  1:16355/275‑1 (MQ=255)
                                                                                                                                                                                                                                                              gaaaaggccATACGCCCCATGGGGGCCGGTGTCTGAGCGTTCGTTTTATCAGGGCCGTGTTCTTCTGCCAGACGGCGGAGAGAAACGTACGTTGAGAAACGCCAAAATCTGTCGCGATCGAGCCAAAGTACAGAGAAAAATCTCTATACGCCGTCAATCATACGCTGCTCCGCGTTCACTTCGCCTTTTTCGCGCACCGGCGCGCGACCAAACATCACAGACACTCGCACCAGCTGCACATCCAGGTTTGGGTTGCTACGGTGCAAATCGAGAt  <  2:225386/266‑1 (MQ=255)
                                                                                                                                                                                                                                                                        tACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATccgtgccgt                                                                                                                                                                                                                           >  2:237777/1‑48 (MQ=255)
                                                                                                                                                                                                                                                                            cgcCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTc                                                                                                                                                                                                                       <  1:237782/48‑1 (MQ=255)
                                                                                                                                                                                                                                                                              ccACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGAACAGCGAAAAATTTCTGTACGCCGTTAAGCATACGCAGCGGCGGGTTCACTTCGCCTTTTTCACCCCCCGGCGCGCGAcacaacct                                                             >  2:572884/1‑192 (MQ=255)
                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                               
GTTGATGCCCTGGTAAAGTCGGTTCCAGGTGAAGCCCAGAATACGGTCAGTCAGGCGAATCATCTCGTAAGAGAAATTCGCCGCAATCTCTTCCATCAGTGCAATCGCGTTCTGCTGCGCTTTTTCATGGGAGATTTTTTTGCTGCGCGCTTCATCTTCTACCGCTTTGGCAATGGCGCGGGAGGCGAGCAGCTTATTAAACAGATCCTGACGAGCAGGCAAACGTGGGCCTACGGCAGCCAGACGTTGACGGGCAAAGTGCATACGCGCCACGCGCGCCAGTTTCTGAGCGATAGTTTTATCCGTGCCGTGTTCATCCGCCATACGGCGCAGCGAAACTGACGGCGAGAAACGCACAAAACTGTCGCGACCGAGCCACAGTACAGCGAAAAATTTCTGTACGCCGTTAAGCATACGCAGCGGCGGGTTCACTTCGCCTTTTTCACGCCCCGGCGCGCGACCAAACATCACCGACACTGGCACCATCTGCACATCCAGATTTGGGTTGCTACGGTGCAAATCGAGAT  >  CP009273/4245546‑4246072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.