New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4488113	16 (0.420)	9 (0.250)	5/300	NT	37.1%	coding (25/366 nt)	insC1	IS2 repressor TnpA
	?	CP009273	= 4488470	NA (NA)					coding (59/906 nt)	insD1	IS2 transposase TnpB

ACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGC  >  CP009273/4487846‑4488387                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                   acCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAg                                                                                                                                                                                                                                                                             >  1:185887/1‑275 (MQ=255)    gCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACg                                                                                                                                                                                                                                                                          <  1:16105/275‑1 (MQ=255)                    aTTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTAATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGANAGTCTTAATAATAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTAACACACAGGaa                                                                                                                                                                                                                                                          >  1:558879/1‑275 (MQ=255)                                                      aCATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCgg                                                                                                                                                                                                                        <  2:231983/275‑1 (MQ=255)                                                          tCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTc                                                                                                                                                                                                                                          >  1:158302/1‑253 (MQ=255)                                                              tAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTcagca                                                                                                                                                                                                                                      <  2:158299/253‑1 (MQ=255)                                                                 aaaaGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGAGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGtc                                                                                                                                                                                                             >  1:712270/1‑275 (MQ=255)                                                                                    aTCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTATACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTATTTTTTAGACTATTCATTGGAGAACAGATGATTGATGTCTTCGGGCCTGAGAAACGCAGACGGCGTACCACACAGGATAAGATCGCAATTGATAAGCAGAGCTTTGAACCGGGGTNTAAGGTCCCCCTCATTTCCattcaca                                                                                                                                                                                          >  2:472562‑M1/1‑268 (MQ=255)                                                                                                       aTGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGaaa                                                                                                                                                                                                                                                                                  >  1:12493/1‑168 (MQ=255)                                                                                                           gggATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCa                                                                                                                                                                                                                                                                              <  2:12493/168‑1 (MQ=255)                                                                                                           gggATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAAt                                                                                                                                                                                                                                               >  1:277616/1‑199 (MQ=255)                                                                                                               tAACTGACGTAAGGAGGGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGtt                                                                                                                                                                                                                                           <  2:277611/199‑1 (MQ=255)                                                                                                                 aCTGACGTAAGGAGTGCTGAAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTANATAAGTGANAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCAGGCAACATGGTGTAGCAGCCAGCCAGTTATTtct                                                                                                                                                              <  1:472569/274‑1 (MQ=255)                                                                                                                  cTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGc                                                                                                                                                                                             >  2:635339/1‑242 (MQ=255)                                                                                                                      cGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACA                                                                                                                                                                                         <  1:635348‑M1/242‑1 (MQ=255)                                                                                                                       agaaggATTGCTGCATGGATTTTATGGTCCTTTGTAGACTTGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAcaacggctgactaagcttactccccatccccgtgcaataagggcacgtgcgctatccacttttttgcccgtccatattcaacggcttctttgaggagttcattttccatcgttttcttgccgagc                                                                                                                                                       <  1:89757‑M1/273‑126 (MQ=255)                                                                                                                          aGGAGTGCTGCAGGGATTTGATGTGCCCGGGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATc                                                                                                                                                                                                                                                    >  1:495311/1‑179 (MQ=255)                                                                                                                           gtcaggctgcAGGGATTTGATGGTACCTTGTAGACTGGCCCCCTTAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAg                                                                                                                                                    <  2:185884/269‑1 (MQ=255)                                                                                                                           cgAGTGCTGCATGGATTTGATGGTCCCTTGTATACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTGTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAg                                                                                                                                                    <  2:712260/273‑1 (MQ=255)                                                                                                                              gTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACGACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCaa                                                                                                                                                                                                                                                <  2:495304/179‑1 (MQ=255)                                                                                                                                                                gCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGT                                                                                                                                                                                     >  1:215976‑M1/1‑204 (MQ=255)                                                                                                                                                                               aGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAtacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagccatcggttcgtctgcgaatgccgtg                                                                                                >  2:297249‑M1/1‑192 (MQ=255)                                                                                                                                                                                      agagatatttttaataagtgatagtcTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAtacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcg                                                                                        <  1:37598‑M1/263‑91 (MQ=255)                                                                                                                                                                                       aaTATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAtacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcg                                                                                        <  1:297255‑M1/274‑91 (MQ=255)                                                                                                                                                                                        aaaaaaatatattaagttatagtttTTAGTCTGGTTTTTAGTCTTGTTAGTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAtacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcg                                                                                        <  2:584743‑M1/261‑91 (MQ=255)                                                                                                                                                                                             aCTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGT                                                                                                                                                                                   >  2:611‑M1/1‑177 (MQ=255)                                                                                                                                                                                                         gATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAcaacggctgactaagcttactccccatccccg                                                                                                                                                                                                                                                    >  2:471353‑M1/1‑68 (MQ=255)                                                                                                                                                                                                         gATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAcaacggctgactaagcttactccccatccccg                                                                                                                                                                                                                                                    >  2:722194‑M1/1‑68 (MQ=255)                                                                                                                                                                                                         gATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAtacggagaagcgcatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaac                                                                                            >  1:398516‑M1/1‑166 (MQ=255)                                                                                                                                                                                                         gATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAtacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcatctgagaatgacgtgcaactgcgcacgcgacacccggagac                                                                      >  1:351017‑M1/1‑166 (MQ=255)                                                                                                                                                                                                         gATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAtacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatacagacatcggttcgtctgagaacgacgtgctactgcgcacgggacaccctgcagc                                                                      >  2:37598‑M1/1‑166 (MQ=255)                                                                                                                                                                                                         gATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAt                                                                                                                                                                                 >  1:715443‑M1/1‑166 (MQ=255)                                                                                                                                                                                                         gATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGAGTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGataacatggtgtatacggagaagcacatccgtatcatcagtgagacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaac                                                                                            >  1:684337‑M1/1‑153 (MQ=255)                                                                                                                                                                                                         gATAGTCTTAATACTAGTTGTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAtacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaac                                                                                            >  1:584752‑M1/1‑166 (MQ=255)                                                                                                                                                                                                             gTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAcaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccacttttttgcccgtccatattcaacggcttctttgaggagttcattttccatcgttttcttgccgagc                                                                                                                                                       <  1:392228‑M1/189‑126 (MQ=255)                                                                                                                                                                                                             gTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAcaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccacttttttgcccgtccatattcaacggcctctttgaggagttcattttccatcgttttcttgccgagca                                                                                                                                                      <  2:48061‑M1/190‑127 (MQ=255)                                                                                                                                                                                                             gTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAcaacggctgactaagcttactccccatccccgggca                                                                                                                                                                                                                                                <  1:722204‑M1/100‑37 (MQ=255)                                                                                                                                                                                                             gTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAcaacggctgactaagcttactccccatccccgggca                                                                                                                                                                                                                                                <  1:471360‑M1/100‑37 (MQ=255)                                                                                                                                                                                                             gTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGataacatggtgtatacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcg                                                                                        <  2:684328‑M1/252‑104 (MQ=255)                                                                                                                                                                                                             gTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAtacgg                                                                                                                                                                             <  2:715433‑M1/167‑6 (MQ=255)                                                                                                                                                                                                                     aCTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAcaacggctgactaagcttactccccatccccg                                                                                                                                                                                                                                                    >  1:582657‑M1/1‑56 (MQ=255)                                                                                                                                                                                                                        aGTTTTTAGACTCGTCATTGGAGAACAGCTGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAACAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCa                                                                                                                                                                                                >  2:166626‑M1/1‑136 (MQ=255)                                                                                                                                                                                                                        aGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCG                                                                                                                                                                                               >  1:635695‑M1/1‑138 (MQ=255)                                                                                                                                                                                                                         gTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAcaacggctgactaagcttactccccatccccgggca                                                                                                                                                                                                                                                <  2:582648‑M1/88‑37 (MQ=255)                                                                                                                                                                                                                            tttAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTA                                                                                                                                                                                  >  2:721915‑M1/1‑147 (MQ=255)                                                                                                                                                                                                                            tttAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAA                                                                                                                                                                                           <  2:635686‑M1/138‑1 (MQ=255)                                                                                                                                                                                                                            gttaGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTGGATCCGGGGATGACGGTCTCCCTCGTTGCCCGGCA                                                                                                                                                                                            <  1:166629‑M1/136‑1 (MQ=255)                                                                                                                                                                                                                                  cTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACA                                                                                                                                                                                         <  1:159779‑M1/134‑1 (MQ=255)                                                                                                                                                                                                                                       cATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCC                                                                                                                                                                                                 <  2:602725‑M1/121‑1 (MQ=255)                                                                                                                                                                                                                                          tGGATAACAGAGGATGGATGTTGTTGGGCCGGAGAAACGCAGACGGCGTCCCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGCTGACGGTCTCCCTCGTTGCCCGataacatggtgtatacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcgcacgcgacacccggagacaacggctgactaagcttactccccatccccgggc                                    <  1:206824‑M1/275‑156 (MQ=255)                                                                                                                                                                                                                                            gagaACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGataacatggtgtatacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacttgcaac                                                                                            >  2:388508‑M1/1‑118 (MQ=255)                                                                                                                                                                                                                                               aaCAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACA                                                                                                                                                                                         <  2:402743‑M1/121‑1 (MQ=255)                                                                                                                                                                                                                                                aCAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGataacatggtgtatacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcg                                                                                        <  1:388514‑M1/217‑104 (MQ=255)                                                                                                                                                                                                                                                aCAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAtacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaac                                                                                            >  1:640958‑M1/1‑127 (MQ=255)                                                                                                                                                                                                                                                   gatgatTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACA                                                                                                                                                                                         <  2:468599‑M1/117‑1 (MQ=255)                                                                                                                                                                                                                                                    atgatTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAtacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcg                                                                                        <  2:640949‑M1/213‑91 (MQ=255)                                                                                                                                                                                                                                                    atgatTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCG                                                                                                                                                                                               >  1:684241‑M1/1‑110 (MQ=255)                                                                                                                                                                                                                                                        ttgatGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAA                                                                                                                                                                                           <  2:684232‑M1/110‑1 (MQ=255)                                                                                                                                                                                                                                                         tgatGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAtacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaac                                                                                            >  1:453726‑M1/1‑118 (MQ=255)                                                                                                                                                                                                                                                         tgatGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGT                                                                                                                                                                                     >  1:401024‑M1/1‑115 (MQ=255)                                                                                                                                                                                                                                                             gTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAtacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcg                                                                                        <  2:453719‑M1/204‑91 (MQ=255)                                                                                                                                                                                                                                                                ttAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAAATGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCG                                                                                                                                                                                               >  1:334073‑M1/1‑98 (MQ=255)                                                                                                                                                                                                                                                                  aGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACA                                                                                                                                                                                         <  2:322713‑M1/102‑1 (MQ=255)                                                                                                                                                                                                                                                                  aGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAA                                                                                                                                                                                           >  1:336679‑M1/1‑100 (MQ=255)                                                                                                                                                                                                                                                                    ggCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAAATGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAA                                                                                                                                                                                           <  2:334067‑M1/98‑1 (MQ=255)                                                                                                                                                                                                                                                                      ccGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATG                                                                                                                                                                                       <  2:336673‑M1/100‑1 (MQ=255)                                                                                                                                                                                                                                                                      ccGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCC                                                                                                                                                                                                 <  1:122716‑M1/90‑1 (MQ=255)                                                                                                                                                                                                                                                                        ggAGAcaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccacttttttgcccgtccatattcaacggcttctttgaggagttcattttccatcgttttcttgccgagcaggcgctggagttctttaatctgcttcatggcggcagc                                                                                                                 <  1:149782‑M1/168‑164 (MQ=255)                                                                                                                                                                                                                                                                         gagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccacttttttgcccgtccatattcaacggcttctttgaggagttcattttccatcgttttcttgccgatcaggcgctggagttctttaatctgcttcatggcggcagcaagttcagaggcaggaacaacctgttctccggcggcgacagaagtaagacttccttcctggtattgcttacgccagagaaataactggctggctgctacaccctgtag     >  1:129615‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                                                         gagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccacttttttgcccgtccatattcaacggcttctt                                                                                                                                                                                          >  1:516468‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                                                         gagaAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAGCCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACA                                                                                                                                                                                         <  1:207309‑M1/95‑1 (MQ=255)                                                                                                                                                                                                                                                                            acaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccacttttttgcccgtccatattcaacggcttctttgaggagttcattttccatcgttttcttgccgagcaggcgctggagttctttaatctgcttcatggcggcagcaagttcagaggcaggaacaacctgttctccggcggcgacagcagtaagacttccttcctggtattgcttacgccagagaaataactggctggctgctacaccatgttgccg  <  1:1880‑M1/275‑275 (MQ=255)                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                   ACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGC  >  CP009273/4487846‑4488387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.