New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4629628	49 (1.270)	10 (0.280)	8/292	NT	14.9%	coding (496/717 nt)	arcA	response regulator in two‑component regulatory system with ArcB or CpxA
	?	CP009273	= 4630009	69 (1.930)					coding (115/717 nt)	arcA	response regulator in two‑component regulatory system with ArcB or CpxA

GATTAATCTTCCAGATCACCGCAGAAGCGATAACCTTCACCGTGAATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGACAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATC  >  CP009273/4629405‑4629893                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                          gATTAATCTTCCAGATCACCGCAGAAGCGATAACCTTCACCGTGAATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTg                                                                                                                                                                                                                                                                    >  1:60179/1‑231 (MQ=255)  aTTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGAATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGACTGGGTTTTCACAGAAGTGAAGACTGGCGCGGAACTCGCTGCGCGGCAGCTTGTAATGCTCGCCAACAGGGCCGATCAACGAACgg                                                                                                                                                                                                                       >  1:572372/1‑275 (MQ=255)     aaTCTTCCAGATCACCGCAGAAGCGATAACCTTCACCGTGAATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGcgcg                                                                                                                                                                                                                                                                <  2:60178/231‑1 (MQ=255)             aGATCACCGCAGAAGCGATAACCTTCACCGTGAATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTc                                                                                                                                                                                                            <  1:11314/275‑1 (MQ=255)              gATCACCGCAGAAGCGATAACCTTCACCGGTAATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTc                                                                                                                                                                                                            <  1:27389/274‑1 (MQ=255)                         aaGCGATAACCTTCACCGTGAATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAAatgcatcagatcctctctgaatatgacatcaacctggtgatcatggatatcaatgtgccgaggaataacagtctt                                                                                                                                                                                                >  2:506856‑M1/1‑200 (MQ=255)                         aaGCGATAACCTTCACCGTGAATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTG‑ATTTTGCCTGGGTTTTAACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTTGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCaaaaa                                                                                                                                                                                               >  1:24285/1‑272 (MQ=255)                              aagacctttggcGTGCATGGTGGCGATGTTCGCCGGCGTATCCGGCGTAGAGTCGAAATGTTTACGAAGACGGCGGATCGGCACGTCTACAGGACGGTCGGGCGGTTTCAGCTCACGGCCGGTCATTTTCGTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCAtt                                                                                                                                                                                             <  2:146330/262‑1 (MQ=255)                                   cTTCACCGTGAATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGNTCGTGCGGTTTCAGCTCACAGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTg                                                                                                                                                                                      <  1:549701/275‑1 (MQ=255)                                      cACCGTGAATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCCACGAACGGCGGTTGATTTGCAGTTCCCCACCAGTGAACTTTTAg                                                                                                                                                                                   >  2:622049/1‑275 (MQ=255)                                          gTGAATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACGGCCGGACATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGa                                                                                                                                                                                           <  1:622058/263‑1 (MQ=255)                                               tggtggCGATGATTCTCGGCGTATCCGTTGTAGATTCGAAATTTTTACGAATACGTCGGGTCGTAAAGGCTACAGTACGGTCGTGCGGTTTNAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTGCCACTCATTGAATTTGTAGCTTTCAACg                                                                                                                                                                          <  1:491287/275‑1 (MQ=255)                                                       atgatgTCAGGCGTAGTCGTCTGAGATTCTAATTGTGTACGAGTACGGCGGATCGTCCCTTCGTCCGTACGGTCGTGCGGTTTCAGCTCACGGCCGGTCAGTTTCGTCAGCAGTTCAGCACGGGACTG‑ATTTTGCCTGGGTTTTCACAGTAGTGAAGCATGGCGCGGAACTCGCTTCGCGGCATCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACCGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGt                                                                                                                                                                 <  2:24285/275‑1 (MQ=255)                                                       atgatTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACNGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAAatgcatcagatcctctctgaatatgacatcaacctggtgatcatggatatcaatctgccgggtaagaacggtcttcggttcgcgcgtgacctgcgcgagcaggcg                                                                                                                                                                  <  1:506863‑M1/275‑106 (MQ=255)                                                                    tatccggcgtaGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAAatgcatcagatccgctctgaatatganatcaacctngtgatcatggatatcaatctgccgggtaagaacggtcttctgttagcgcgtgaactgcgcgagcag                                                                                                                                                                     >  1:477080‑M1/1‑157 (MQ=255)                                                                        aggcgtaGAATCGAAATGATGACGGATACGGCGGATGCGCGCGGATAGAGTACGTTCGTGCGGTTGCAGCGCACGTCCGGTTATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAg                                                                                                                                                    <  2:314116/271‑1 (MQ=255)                                                                              aGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAAatgcatcagatcctctctgaatatgacatcaacctggtgatcatggatatcaatctgccgggtaagaacggtcttc                                                                                                                                                                                               >  1:488914‑M1/1‑147 (MQ=255)                                                                               gATTCGAAATGTTTACGAATACGGCGGAGCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTCGTACTGCTCGCCATCAGGGNCGATCAACGAACGGCTGTTGATGTCCAGTTCCCACCCCTTGAACTTGTAGCTTTCAACGCTACCACGTTCTTCGCTAACAGTACCCAGAtt                                                                                                                                          >  1:557558/1‑275 (MQ=255)                                                                                ttgcgagtggtgtACGAATACGGCGGCGCGTCACGTCTACAGTACGGTCGGGCGGTTTCAGCTCACGGCCGGTCATTTTCTGCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGACATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGAtt                                                                                                                                          <  2:78691/262‑1 (MQ=255)                                                                                  tCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAAatgcatcagatcctctctgaatatgacatcaacctggtgatcatggatatcaatctgccgggtaagaacggtcttctgtt                                                                                                                                                                                           <  2:488907‑M1/223‑81 (MQ=255)                                                                                  tCGAAATGTTTAAGAATACGGCGTATCGTCACGTCTACAGTACGGTCGCGCGGTTTCAGCGCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTGCACAGAAGGGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCa                                                                                                                                        <  2:235388/274‑1 (MQ=255)                                                                                     aaaTGTTTACGAATACGGCGGATCGTCACGTCCACAGTACGGTCGTGCGGATTCAGCTCCCGGCAGGTCATTTTCTTCAGCAGTTCAGCACGCTACCGAATTCTGCCCGGGTTTTCACAGCTGTCACGCATGGCGCGGAACTCCCTGCGCGGCAGCTTGTACTGCTCGCCACTAGGGCCGATACACGGACTGCTGTTGATGTACAGGTCCCCACCATTGAACTTGGAGCTGTCCACGCTACCACGTTCTTCGCTGACAGTACCACGATTCATgct                                                                                                                                    >  2:236584/1‑273 (MQ=255)                                                                                         gTTTCCGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCACTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGACTCATGGTACg                                                                                                                                 <  1:715566/274‑1 (MQ=255)                                                                                          tttACGAATACGGCGAATCGTCAAATCTAGAGTACGGTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTg                                                                                                                                                                                                                                                                    >  1:497510/1‑142 (MQ=255)                                                                                              cGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACGGCCGTTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGcgcg                                                                                                                                                                                                                                                                <  2:497503/142‑1 (MQ=255)                                                                                                      ataagggacggcGTCTACAGTACGGTCGTGCGGTTTCAGTTCACGGCCGGTCATTTTCTTCATCAGTTCAGCACGGGAATGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATACATGGTACGGGACAGTAGGTTg                                                                                                                    <  1:709645/263‑1 (MQ=255)                                                                                                                        aGTACGGTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTAGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGGAGCTATCAACGCTAAGACGATCTTCGCTGACAGTACCCAGATTCATGGTCCGGGACAGTAGGTTGCGTGCACGAATCGTCAGtt                                                                                                 >  1:690760/1‑275 (MQ=255)                                                                                                                          tACGGTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTAc                                                                                                                                                 >  2:396427/1‑225 (MQ=255)                                                                                                                            cGGTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCCGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTAAACGCTACGACGGTCTTCGCTGACAGTCCACAGAAACATGGTACGGGACAGTAg                                                                                                                        >  2:709635/1‑248 (MQ=255)                                                                                                                              gTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAg                                                                                                                                             <  1:396434/225‑1 (MQ=255)                                                                                                                               tCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGACAGTAGGTTGCGTGCACGAATCGTCAGGTCACGCgg                                                                                          >  1:318919/1‑275 (MQ=255)                                                                                                                                  tGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTgcgc                                                                                                                                                                                                                                                                 >  1:32976/1‑105 (MQ=255)                                                                                                                                  tGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTg                                                                                                                                                                                                                                                                    >  2:531428/1‑102 (MQ=255)                                                                                                                                     ggttgctccTCACGGGCGTTCATTTTCTTCAGCGTTTCCGCACGGGACTTAATTTTGCCTGGGTTTTCACGGAAGTGAAGCATGGCGCGGAACTCGCTGCGCTGCAGCTGGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGACAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGaa                                                                                    <  2:690751/267‑1 (MQ=255)                                                                                                                                     ggTTTCGGCTCACGGCCGGTCATTTTCTTCATCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCAGGGCGCGGAACTCGCTGCGCGGCATCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGACAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGaa                                                                                    <  1:328471/275‑1 (MQ=255)                                                                                                                                     ggTTTCAGCTCACGGCCGGTCTTTTTCTTCCGCAGTTCAGCACGCGTCTTAATTTTGCCTGGGTTTTCACAGAAGTTAAGCATGGCGCGGAACTCGCTGCGCGGCACCTTGTACTGCTCGCCATTAGGGCCGATCAACGCACGGCTGTTGATGTACAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCGACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGACAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTCaa                                                                                    <  2:318913/275‑1 (MQ=255)                                                                                                                                      gTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCTTGGGTTTTCACAGAACTGAAGCATGGCGCGGAACTCGCTGcgcg                                                                                                                                                                                                                                                                <  1:531436/102‑1 (MQ=255)                                                                                                                                      gTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCa                                                                                                                                                                                                                                                             <  2:32976/105‑1 (MQ=255)                                                                                                                                          cAGCTCCCGGCCGGTTATTTTCTGCCGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGACAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGtt                                                                               <  1:429926/275‑1 (MQ=255)                                                                                                                                          cAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAAatgcatcagatcctctctgaatatgacatcaacctggtgatcatggatatcaatctgccgggtaagaacgggcttctgttagcgcgtgaactgcgcgagcaggcgaatgttgcgttgatgttcctgactggccgtgacaacgaagtcgataaaattctcggcctcgaaatcggtgcagatgactaca                                                                                <  1:437419‑M1/274‑188 (MQ=255)                                                                                                                                                 cGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAAatgcatcagatcctctctgaatatgacatcaacctggtgatcatggatatcaatctgccgggtaagaacggtcttctgttagcgcgtgaactgcgcgagca                                                                                                                                                                      >  1:294325‑M1/1‑80 (MQ=255)                                                                                                                                                 cGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGa                                                                                                                                            >  2:283797/1‑207 (MQ=255)                                                                                                                                                     cGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAAatgcatcagatcctctctgaatatgacatcaacctggtgatcatggatatcaatctgccgggtaagaacggtcttctgttagcgcgtgaactgcgcgagcaggcg                                                                                                                                                                  <  2:294319‑M1/181‑106 (MQ=255)                                                                                                                                                     cGGTCATTCTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCa                                                                                                                                        <  1:283802/207‑1 (MQ=255)                                                                                                                                                       gTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTTAACTTGTAGCTTTCAACCTTACGACCTTCTTCGCTGACAGTCCCCAGATTCATGTTACGGGACAGTAGGTTGCGTGCACGAAGCGTCAGTTCACCCGGGTTGAACGGTTTGGGTATGTGGTc                                                                  >  2:674187/1‑275 (MQ=255)                                                                                                                                                              tcttcAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAAatgcatcagatactctctgaatatgacatcaacctggtgatcatggatatcaatctgccgggtaagaacggtcttc                                                                                                                                                                                               >  2:188810‑M1/1‑67 (MQ=255)                                                                                                                                                                  cagcagTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAAatgcatcagatcctctctgaatatgacatcaacctggtgatcatggatatcaatctgccgggtaagaacggtcttctgtt                                                                                                                                                                                           <  1:188813‑M1/143‑81 (MQ=255)                                                                                                                                                                   aactgTTCAGCACGGTACTTAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTNATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGACAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCAcc                                                         <  1:612706/268‑1 (MQ=255)                                                                                                                                                                        ttCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTgcg                                                                                                                                                                                                                                                                  >  2:459052/1‑66 (MQ=255)                                                                                                                                                                            gCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGc                                                                                                                                                                                                                                                              <  1:459059/66‑1 (MQ=255)                                                                                                                                                                                            tGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGc                                                                                                                                                                                  >  2:503123/1‑126 (MQ=255)                                                                                                                                                                                            tGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGACAGTAGGTTGCg                                                                                                                  >  1:157957/1‑190 (MQ=255)                                                                                                                                                                                              ccTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCt                                                                                                                                                                                                                     >  2:707412/1‑89 (MQ=255)                                                                                                                                                                                                tGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTc                                                                                                                                                                              <  1:503130/126‑1 (MQ=255)                                                                                                                                                                                                tGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGACAGTAGGTTGCGTGCa                                                                                                              <  2:157954/190‑1 (MQ=255)                                                                                                                                                                                                  ggTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTg                                                                                                                                                                                                                 <  1:707422/89‑1 (MQ=255)                                                                                                                                                                                                             aaGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGttct                                                                                                                                                              >  1:154608/1‑129 (MQ=255)                                                                                                                                                                                                                 gAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTCCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGc                                                                                                                                                          <  2:154605/129‑1 (MQ=255)                                                                                                                                                                                                                       tGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGACAGTAGGTTGCGTGCACGAATCGTCAGTTCACGC‑GGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGTCTTNTTTTTCACTTCCAGttattaactac  >  2:477226/1‑264 (MQ=255)                                                                                                                                                                                                                          cgcgGAAatgcatcagatcctctctgaatatgacatcaacctg                                                                                                                                                                                                                                       >  1:609360‑M1/1‑7 (MQ=255)                                                                                                                                                                                                                              gAAatgcatcagatcctctctgaatatgacatcaacctggtga                                                                                                                                                                                                                                   <  2:609351‑M1/43‑41 (MQ=255)                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                          GATTAATCTTCCAGATCACCGCAGAAGCGATAACCTTCACCGTGAATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACGGCCGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAGCATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACGAACGGCTGTTGATGTCCAGTTCCCAACCATTGAACTTGTAGCTTTCAACGCTACGACGTTCTTCGCTGACAGTACCCAGATTCATGGTACGGGACAGTAGGTTGCGTGCACGAATCGTCAGTTCACGCGGGTTGAACGGTTTGGTGATGTAGTCATCTGCACCGATTTCGAGGCCGAGAATTTTATCGACTTCGTTGTCACGGCCAGTCAGGAACATC  >  CP009273/4629405‑4629893

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.