New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	771848 =	32 (0.830)	9 (0.250)	6/298	NT	29.3%	coding (51/1266 nt)	tolA	membrane anchored protein in TolA‑TolQ‑TolR complex
	?	CP009273	772068 =	13 (0.360)					coding (271/1266 nt)	tolA	membrane anchored protein in TolA‑TolQ‑TolR complex

AAGCTCAAGCGGGCGATAATTATTTCAGCAGTGCTGCATGTCATCTTATTTGCGGCGCTGATCTGGAGTTCGTTCGATGAGAATATAGAAGCTTCAGCCGGAGGCGGCGGTGGTTCGTCCATCGACGCTGTCATGGTTGATTCAGGTGCGGTAGTTGAGCAGTACAAACGCATGCAAAGCCAGGAATCAAGCGCGAAGCGTTCTGATGAACAGCGCAAGATGAAGGAACAGCAGGCTGCTGAAGAACTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAGCAACTTGAGAAAGAGCGGTTAGCGGCTCAGGAGCAGAAAAAGCAGGCTGAAGAAGCCGCAAAACAGGCCGAGTTAAAGCAGAAGCAAGCTGAAGAGGCGGCAGCGAAAGCGGCGGCAGATGCTAAAGCGAAGGCCGAAGCAGATGCTAAAGCTGCGGAAGAAGCAGCGAAGAAAGCGGCTGCAGACGCAAAGAAAAAAGCAGAAGCAGAAGCCGCCAA  >  CP009273/771825‑772327                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                    gaGCTCTAGCGGGCGATAATTATTTGAGGAGTTCTGTATGTCATCTGATTTGCGGCGATGATCTGGAGTTCGTTCGATGAGANTCTAGAAGNTTCAGCCGGAGGTGGCGGTGGTTCGTCCATCGACGCTGTCATGGTTGATTCAGGTGCGGTAGTTGAGCAGTACAAACGCATGCAAAGCCAGGAATCAAGCGGGAAGCGTTCTGATGAACAGAGCAAGATGAAGGAAGAGCAGGCTGCTTAAGAACTCTGTGAGAAACAAGCGGCTGAACAGGa                                                                                                                                                                                                                                      <  1:475971/274‑1 (MQ=255)              cGATAATTATTTCAGCAGTGCTGCATGTCATCTTATTTGCGGCGCTGATCTGGAGTTCGTTCGATGAGAATATAGAAGCTTCAGCCGGAGGCGGCGGTGGTTCGTCCATCGACGCTGTCNTGGTTGATACAGGTGCGGTAGTTGAGCAGTACAAACGCATGCAAAGCCAGGAATCAAGCGCGAAGCGTTCTGATGAACAGCGCAAGATGAAGGAACAGCAGGCTGCTGAAGAACTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAg                                                                                                                                                                                                                            <  1:601948/272‑1 (MQ=255)                                                                                                                                    cagtgTTGATTCAGGTGCGGTAGTTGAGCAGTACAAACGCATGCAAAGCCAGGAATCAAGCGCGAAGCGTTCTGATGAACAGCGCAAGATGAAGGAACAGCAGGCTGCTGAAGAACTGCGTGAGAAACACGCGGCTGAACAGGAACGCCTGAAGCAAGTTGAGAAAGAGCGGtt                                                                                                                                                                                                        <  1:538870/170‑1 (MQ=255)                                                                                                                                           gcgtcgatggacgaaccaccgccgcctccggctgaagcttctatattctcatcgaacgaactccagatcagcgccgcaaataagatgacatgcagcactgctgaaGAACTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAGCAACTTGAGAAAGAGCGGTTAGCGGCTCAGCAGCAGAAAAAGCAGGCTGAAGAAGCCGCAAAACAGGCCGAGTTAAAGCAGAAGCAAGCTGAAGAGGCGGCAGCGAAAGCGGCGGCAGATGCTAAAGc                                                                                            >  1:393467‑M2/106‑275 (MQ=255)                                                                                                                                           gcgtcgatggacgaaccaccgccgcctccggctgaagcttctatattctcatcgaacgaactccagatcagcgccgcaaataagatgacatgcagcactgctgaaGAACTGCGTGAGAAACAAGAGGCTGAACAGGAACGCCTGAAGCAACTTGAGAAAGAGCGGTTAGCGGCCAAGGAGCAGAAAAAGCAGGCTGAAGAAGCCGCAAAACAGACCGAGTTAAAGCAGAAGAAAGCAGAAGAGGGAGCAGCGAAAGAGGCGGCAGNGGctaaaac                                                                                            >  2:277223‑M2/106‑273 (MQ=255)                                                                                                                                             ttCAGGTGCGGTAGGTGAGCAGTACAAACGCATGTAAAGCCAGGAATCAAGCGCGAAGCGTTCTGATGAACAGCGCAAGATGAAGGAACAGCAGGCTGCTGAAGAACTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAGCAACTTGAGAAAGAGCGGTTAGCGGCTTAGGAGAAGAANAAGCAGGCNGAAGAAGCCGCACAACAGGCCGAGTTCAAGCAGAAGCAAGCAGAAGAGGCGGCAGCGAAAGCGGCGGCAGATGCTAAAGCGa                                                                                          >  1:467757/1‑275 (MQ=255)                                                                                                                                             gtcgatggacgaaccaccgccgcctccggctgaagcttctatattctcatcgaacgaactccagatcagcgccgcaaataagatgacatgcagcactgctgaaGAACTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAGCAACTTGAGAAAGAGCGGTTAGCGGCTc                                                                                                                                                                                                >  2:694215‑M2/104‑173 (MQ=255)                                                                                                                                             gtcgatggacgaaccaccgccgcctccggctgaagcttctatattctcatcgaacgaactccagatcagcgccgcaaataagatgacatgcagcactgctgaaGAACTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAGCAACTTGAGAAAGAGCGGTTAGCGGCTCAGGAGCAGAAAAAGCAGGCTGAAGAAGCCGCAAAAAAGGCCGAGTTAAAGAAGAAGCAAGAGGAAGAGGCGGCAGCGAAAGAGGCGGAAGAggctaaataca                                                                                          >  2:198397‑M2/104‑271 (MQ=255)                                                                                                                                             gtcgatggacgaaccaccgccgcctccggctgaaacttctatattctcatcgaacgaactccagatcagcgccgcaaataagatgacatgcagcactgctgaaGAACTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAGCAACTTGAGAAAGAGCGGTTAGCGGCTCAGGAGCAGAANAAGCAGGCNGAAGAAGCCGCAAAACAGGCCGAGTTAAAGCAGAAGCAAGCAGAAGAGGCGGAAGCGAAAGCAGCGGCAGATACAAAAACGa                                                                                          >  1:461135‑M2/104‑275 (MQ=255)                                                                                                                                                 atggacgaaccaccgccgcctccggctgaagcttctatattctcatcgaacgaactccagatcagcgccgcaaataagatgacatgcagcactgctgaaGAACTGCGTGAGAAACAAGCGGCTGAACAGGAAGGCCGTACGCAACGTGAGAAAGAGCGGtt                                                                                                                                                                                                        <  1:490259‑M2/62‑1 (MQ=255)                                                                                                                                                 atggacgaaccaccgccgcctccggctgaagcttctatattctcatcgaacgaactccagatcagcgccgcaaataagatgacatgcagcactgctgaaGAACTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAGCAACTTGAGAAAGAGCGGTTAGCGGCTCAGGa                                                                                                                                                                                            <  1:694224‑M2/74‑1 (MQ=255)                                                                                                                                                  gTGCGGTAGTTGAGCAGTACAAACGCATACAAAGCCAGGAATCAAGCGCGAAGCGTTCTGATGAACAGCGCAAGATGAAGGAACAGCAGGCTGCTGAAGAACTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAGCAACTTGAGAAAGAGCGGTTAGCGGCTCAGGAGCAGAAAAAGCNGGCTGAAGAAGCCGCAAAACAGGCCGAGTTAAAGCAGAAGCAAGCTGAAGAGGCGGCAGCGAAAGCGGCGGCAGATGCTAAAGCGAAGGca                                                                                     >  1:510408/1‑274 (MQ=255)                                                                                                                                                       gaaGTTGAGCAGTACAAACGCATGCAAAGCCAGGAATCAAGCGCGAAGCGTTCTGATGAACAGCGCAAGATGAAGGAACAGCAGGCTGCTGAAGAACTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAGCAACTTGAGAAAGAGCGGTTAGCGGCTCAGGAGCAGaa                                                                                                                                                                                      >  1:252181/3‑173 (MQ=255)                                                                                                                                                           ttGAGCAGTACAAACGCATGCAAAGCCAGGAATCAAGCGCGAAGCGTTATGATGAACAGCGCAAGATGAAGGAACAGCAGGCTGCTGAAGAATTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAGCAACTTGAGAAAGAGCGGTTAGCGGCTCAGGAGCAGAAAAAg                                                                                                                                                                                  <  2:252176/173‑1 (MQ=255)                                                                                                                                                                  gTACAAACGCATGCAAAGCCAGGAATCAAGCGCGAAGCGTTCTGATGAACAGCGCAAGATGAAGGAACAGCAGGCTGCTGAAGAACTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAGCAACTTGAGAAAGAGCGGTTAGAGGCTCAGGAGCAGAAAAAGCAGGCTGAAGAAGCCGCAAAACAGGCCGAGTTAAAGCAGAAGCAAGCTGAAGAGGCGGCAGCGAAAgcgg                                                                                                            >  1:631280/1‑236 (MQ=255)                                                                                                                                                                    ctccggctgaagcttctatattctcatcgaacgaactccagatcagcgccgcaaataagatgacatgcagcactgctgaaGAACTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAGCAACTTGAGAAAGAGCGGTTAGCGGCTCAGGAGCAGAAAAAGCAGGCTGAAGAAGCCGCAAAACAGGCCGAGTTAAAGCAGAAGCAAGCTGAAGAGGCGGCAGCGAAAGCGGCGGCAGATGCTAAAGCGAAGGCCGAAGCAGATGCTAAAGCt                                                                   <  1:277228‑M2/195‑1 (MQ=255)                                                                                                                                                                                cttctatattctcatcgaacgaactccagatcagcgccgcaaataagatgacatgcagcactgctgaaGAACTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAGCAACTTGAGAAAGAGCGGTTAGCGGCTCAGGAGCAGAAAAAGCAGGCTGAAGAAGCCGCAAAACAGGCCGAGTTAAAGCAGAAGCAAGCTGAAGAGGCGGCAGCGAAAGCGGCGGCAGATGCTAAAGCGAAGGCCGAAGCAGATGCTAAAGCTGCGGAAGAagca                                                       <  1:198400‑M2/207‑1 (MQ=255)                                                                                                                                                                                                                      cgcAAGATGAAGGAACAGCAGGCTGCTGAAGAACTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAg                                                                                                                                                                                                                            >  1:309711/1‑72 (MQ=255)                                                                                                                                                                                                                          aGATGAAGGAACAGCAGGCTGCTGAAGAACTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAGCAAc                                                                                                                                                                                                                        <  2:309705/72‑1 (MQ=255)                                                                                                                                                                                                                           gATGAAGGAACAGCTGCCTGCTGAAGAAGTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAGCAACTTGAGAAAGAGCGGTTAGCGGCTc                                                                                                                                                                                                >  1:537922/1‑95 (MQ=255)                                                                                                                                                                                                                               aaGGAACAGCAGGCTGCTGAAGAACTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAGCAACTTGAGAAAGAGCGGTTAGCGGCTCAGGa                                                                                                                                                                                            <  2:537914/95‑1 (MQ=255)                                                                                                                                                                                                                                     cagcagGCTGCTGAAGAACTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAGCAACTTGAGAAAGAGCGGTTAGCGGCTCAGGAGCAGAAAAAGCAGGCTGAAGAAGCCGCAAAACAGGCCGAGTTAAAGCAGAAGCAAGCTGAAGAGGCGGCAGCGAAAGCGGCGGCAGATGCTAAAGCGAAGGCCGACGCAGACGCTAAAGCTGCGGAAGAAGCAGCGAAGAAAGCGGATGCAGACGAAAAGAAAAAAGCAGAAGAAGAAGCCGACaa  >  1:337430/1‑275 (MQ=255)                                                                                                                                                                                                                                       gcagGCTGCTGAAGAACTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAGCAACTTGAGAAAGAGCGGTTAGCGGCTCAGGAGCAGAAAAAGCAGGCTGAAGAAGCCGCAAAACAGGCCGAGTTAAAGCAGAAGCAAGCTGAAGAGGCGGCAGCGAAAGCGGCGGCAGATGCTAAAGCGAAGGCCGa                                                                                   >  2:214964/1‑192 (MQ=255)                                                                                                                                                                                                                                           gctgctGAAGAACTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAGCAACTTGAGAAAGAGCGGTTAGCGGCTCAGGAGCAGAAAAAGCAGGCTGAAGAAGCCGCAAAACAGGCCGAGTTAAAGCAGAAGCAAGCTGAAGAGGCGGCAGCGAAAGCGGCGGCAGATGCTAAAGCGAAGGCCGAAGCa                                                                               <  1:214968/192‑1 (MQ=255)                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                    AAGCTCAAGCGGGCGATAATTATTTCAGCAGTGCTGCATGTCATCTTATTTGCGGCGCTGATCTGGAGTTCGTTCGATGAGAATATAGAAGCTTCAGCCGGAGGCGGCGGTGGTTCGTCCATCGACGCTGTCATGGTTGATTCAGGTGCGGTAGTTGAGCAGTACAAACGCATGCAAAGCCAGGAATCAAGCGCGAAGCGTTCTGATGAACAGCGCAAGATGAAGGAACAGCAGGCTGCTGAAGAACTGCGTGAGAAACAAGCGGCTGAACAGGAACGCCTGAAGCAACTTGAGAAAGAGCGGTTAGCGGCTCAGGAGCAGAAAAAGCAGGCTGAAGAAGCCGCAAAACAGGCCGAGTTAAAGCAGAAGCAAGCTGAAGAGGCGGCAGCGAAAGCGGCGGCAGATGCTAAAGCGAAGGCCGAAGCAGATGCTAAAGCTGCGGAAGAAGCAGCGAAGAAAGCGGCTGCAGACGCAAAGAAAAAAGCAGAAGCAGAAGCCGCCAA  >  CP009273/771825‑772327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.