New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1635771 =	68 (1.770)	4 (0.110)	4/300	NT	6.7%	coding (41/216 nt)	cspB	Qin prophage; cold shock protein
	?	CP009273	1635987 =	47 (1.280)					intergenic (‑176/‑125)	cspB/cspF	Qin prophage; cold shock protein/Qin prophage; cold shock protein

ATCTTTACTACCATCAACAGGAGAAATAAAGCCGAAACCTTTATCAGCGTTAAACCATTTTACTAAACCAGTCATTTTATTTGACATTCTACATTCCTTAACTTGAGCCTTTCGGCATAAATGGTTTGCATAACAGAAACGACTTCGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCTTTCTTCAGGAACGTGTGTATAGTGCGCCAAGTTATCAGTATTAAGGAATTTTTTTGTCCCGTAAAATGACAGGAATTGTCAAAACCTTTGACGGCAAAAGCGGCA  >  CP009273/1635725‑1636163                                                                                                                                                                                                                                                                       |                                                                                                                                                                                 aTCTTTACTACCATCAACAGGAGAAATAAAGCCGAAACCTTTATCAGCGTTAAACCATTTTACTAAACCAGTCATTTTATTTGACATTCTACATTCCTTAACTTGAGCCTTTCGGCATAAATGGTTTGCATAACAGAAACGACTTCGTACTTAATTGGAGAGACTCAAAGAAGGAGTAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACata                                                                                                                                                                      <  1:46684/275‑1 (MQ=255)           ccATCAACAGGAGAAATAAAGCCGAAACCTTTATCAGCGTTAAACCATTTTACTAAACCAGTCATTTTATTTGACATTCTACATTCCTTAACTTGAGCCTTTCGGCATAAATGGTTTGCATAACAGAAACGACTTCGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAA‑TAATTCGTAAATCGTCTGTTCTTCAAACCGACGCAAACATTAGACCATAGTTTAACatctaaaaaaatt                                                                                                                                                            >  2:337699/1‑263 (MQ=38)               cAACAGGAGAAATAAAGCCGAAACCTTTATCAGCGTTAAACCATTTTACTAAACCAGTCATTTTATTTGACATTCTACATTCCTTAACTTGAGCCTTTCGGCATAAATGGTTTGCATAACAGAAACGACTTCGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGAAAAGTTAAAAAAATAAAGAAATGtta                                                                                                                                                         >  1:211284/1‑273 (MQ=255)                                          tATTAGCGTTAAACCATTTTACTAAACCAGTCATTTTATTTGACATTCTACATTCCTTAACTTGAGCCTTGCGGCATAAATGGTTTGCATAACAGAAACGACTTCGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAAccc                                                                                                                             <  1:163675/275‑1 (MQ=255)                                                 tTTACACCAATNTACTAAACCAGTCATTTTATTTGACATCCTACAGTCCTTATCTTGTTCCTATCAGCATAAAGGGTTGGCAAAACAGAAACGAATTCTTACTGAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTCTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAAGCATTTACGCATAGTTGAACCTATGAAGCAATGTTTATTTTAGACCTCCAGCCATCTTCAACCCCATcaac                                                                                                                      >  2:71257‑M1/2‑274 (MQ=255)                                                  TTAAATCATTTTTCTAAAACAGTTATTTTATTTTACATTCTACATTCCTTAACTTGAGCCTTTCGGCATAAATGGTTTGCATAACAGAAACGACTTCGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCaaa                                                                                                                      >  1:39197‑M1/1‑274 (MQ=255)                                                          ttttAACAAACCAGTCATTTTTTTTTACCTTTTACATTCCTTAACTTGTGCCTTTCTGCATAAATTGTTTGCATAACAAAAACGACTTCGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTTAAATGAGAACTGGTTTAGTAAACTACTTCGTATAACGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAg                                                                                                             <  2:211280/275‑1 (MQ=255)                                                                     cAGTCATTTTATTTGACATTCTACATTCCTTAACTTGAGCCTTTCGGCATAAATGGTTTGCATAACAGAAACGACTTCGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCCATCATTAACGCATAGTTGAACATATGAAGAAATGTTTATTTTAGACAACCAGCCATCTTCAACACATTCAAAAAACTATCGCNttcttaccg                                                                                                  >  2:273478/1‑271 (MQ=255)                                                                     cAGTCATTTTATTTGACATTCTACATTCCTTAACTTGAGCCTTTCGGCATAAATGGTTTGCATAACAGAAACGACTTCGTAATTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATGAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCTTTCTTCAgg                                                                                                  <  1:273483/275‑1 (MQ=255)                                                                     cAGTCATTTTATTTGACATTCTACATTCCTTAACTTCAGCCTTTCGGCATAAATTGTTTGCATAACAGAAACGACTTCGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGATAACTGCTTTAGTAAACTACTTCGTATATCGTATGTTCTTCAAACCGACGCAATCAGTGACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGTCATCCAGCCATCTTCAACACCATCAAAAACCTATAGCTTTCTTCAgg                                                                                                  <  1:691626/275‑1 (MQ=255)                                                                      aGTCATTTTTTTTGACATTCTACATTCCTTTACTTTGGCCTTTCGGAATAAATGGTTTGCATAACAGAAACGACTTCGTAGTTAATGGGAGAGACTCAAAGAAGGAATAAGTGAATAACCCCGGAAATGAGAACTGCTTTAGT‑AACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCTTTCTTCAGGaa                                                                                                <  1:337705/275‑1 (MQ=255)                                                                        tCATTTTATTTGACATTCTACATTCCTTAACTTGAGCCTTTCGGCATAAATGGTTTGCATAACAGAAACGACTTCGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCa                                                                                                                                                               >  2:667765/1‑211 (MQ=255)                                                                          tgtttgtgttataTTCTCCATTCCTTACTGTGATCATTTCGCAATAAATGGTTTGTATAAAAGTAACTTCTTAGTACTTAAGTGGAGAAACTCAAAGAAGGAATAAGTGAATAACACCTGAAACGAGAACTTATTTAGTAAACTACGTCATATATCGTCTGTTCTACAAACCGACGCATTCATTAACGCATAGTTTAACATATGAAGAAATGTTTATTTTAGACATCCAGCCACCTTCAACCACATCAAAAAACTATAGCTTTCTTCAGGAAc                                                                                               <  2:228023/261‑1 (MQ=255)                                                                            tttATTTGACATTCTACATTCCTTAACTTGAGCCTTTCGGCATAAATGGTTTGCATAACAGAAACGACTTCGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGt                                                                                                                                                           <  1:667774/211‑1 (MQ=255)                                                                                          tACATTCCTTAACTTGAGCCTTTCGGCATAAATGGTTTGCATAACAGAAACGACTTCGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGa                                                                                                                                                 >  2:562607/1‑207 (MQ=255)                                                                                              ttCCTTAACTTGAGCCTTTCGGCATAAATGGTTTGCATAACAGAAACGACTTCGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATc                                                                                                                                             <  1:562616/207‑1 (MQ=255)                                                                                                     acgggAGCCTTTCGGCATAAATGGTTTGCATAACAGAAACGACTTCGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCAGTAACGCAGAGTTGAACATATGAAGCAATGTTTATTTGAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCTTTCTTCAGGaa                                                                                                <  1:201277/241‑1 (MQ=255)                                                                                                                tCGGCATAAATGGTTTGCATAACAGAAACGACTTCGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCa                                                                                                                                                               >  2:109233/1‑171 (MQ=255)                                                                                                                    cATAAATGGTTTGCATAACAGAAACGACTTCGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGt                                                                                                                                                           <  1:109234/171‑1 (MQ=255)                                                                                                                             tttGCATAACAGAAACGACTTCGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACtat                                                                                                               >  1:184336/1‑206 (MQ=255)                                                                                                                                 cATAACAGAAACGACTTCGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCt                                                                                                           <  2:184333/206‑1 (MQ=255)                                                                                                                                         aaaCGACTTCGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACtat                                                                                                               >  2:222420/1‑194 (MQ=255)                                                                                                                                             gACTTCGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCt                                                                                                           <  1:222425/194‑1 (MQ=255)                                                                                                                                                  cGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCa                                                                                                                                                                                  <  2:238272/118‑1 (MQ=255)                                                                                                                                                  cGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCTttctt                                                                                                      >  1:199750/1‑194 (MQ=255)                                                                                                                                                      cTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCTTTCTTCAgg                                                                                                  <  2:199747/194‑1 (MQ=255)                                                                                                                                                         aaTTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGa                                                                                                                                                                   >  2:429572/1‑126 (MQ=255)                                                                                                                                                         aaTTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCaaaaa                                                                                                                    >  1:154350/1‑173 (MQ=255)                                                                                                                                                             ggAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCa                                                                                                                                                               <  1:429579/126‑1 (MQ=255)                                                                                                                                                             ggAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACta                                                                                                                <  2:154347/173‑1 (MQ=255)                                                                                                                                                                     tCAAAGAAGGAATAAGTTAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCANTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCTTTCTTCAGGAACGTGTGTATAGTGCGCCAAGTTATCAGTATTAAGGAATTTTTTTGTCCCGTAAAATGACAGGAATGGTCAAAACCTTTGACGGCAAACGCGGCa  <  1:529049/275‑1 (MQ=255)                                                                                                                                                                             ggAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAg                                                                                                                                                                               >  1:588989/1‑94 (MQ=255)                                                                                                                                                                                 tAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGa                                                                                                                                                                           <  2:588980/94‑1 (MQ=255)                                                                                                                                                                                       aaTAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCTTTCTTCAGGAACGTGTGTATAGTgcg                                                                                 >  2:364773/1‑178 (MQ=255)                                                                                                                                                                                         tAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACtat                                                                                                               >  1:688090/1‑146 (MQ=255)                                                                                                                                                                                           acacCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCTTTCTTCAGGAACGTGTGTATAGTGCGCCaa                                                                             <  1:364779/178‑1 (MQ=255)                                                                                                                                                                                             acCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCt                                                                                                           <  2:688081/146‑1 (MQ=255)                                                                                                                                                                                                    gaaaggctcaagttaaggaatgtagaatgtcaaataaaatgactggtttagtaaaatggtttaacgcATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAg                                                                                                             >  1:148770‑M2/68‑137 (MQ=255)                                                                                                                                                                                                        ggctcaagttaaggaatgtagaatgtcaaataaaatgactggtttagtaaaatggtttaacgcATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCttt                                                                                                         <  2:148769‑M2/74‑1 (MQ=255)                                                                                                                                                                                                                      aaCTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCTTTCTTCAGGAACGTGTGTATAGTGCGCCAAGTTATCAGTATTAAGGAATTTTTTTGTccc                                               >  2:172379/1‑181 (MQ=255)                                                                                                                                                                                                                      aaCTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCTTTCTTCAGGAACGTGTGTATAGTGCGCCAAGTTATCAGTATTAAGGAATTTTTTTGTccc                                               >  2:333599/1‑181 (MQ=255)                                                                                                                                                                                                                      aaCTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCTTTCTTCAGGAACGTGTGTATAGTGCGCCAAGTTATCAGTATTAAGGAATTTTTTTGTccc                                               >  2:556565/1‑181 (MQ=255)                                                                                                                                                                                                                       atgtagaatgtcaaataaaatgactggtttagtaaaatggtttaacgcATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACtata                                                                                                              >  2:417556‑M2/49‑117 (MQ=255)                                                                                                                                                                                                                        ctactTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTAt                                                                                                                                                       >  2:548655/1‑75 (MQ=255)                                                                                                                                                                                                                        ctactTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACAt                                                                                                                                              >  2:593892/1‑84 (MQ=255)                                                                                                                                                                                                                          actTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCTTTCTTCAGGAACGTGTGTATAGTGCGCCAAGTTATCAGTATTAAGGAATTTTTTTGTCCCGTaa                                           <  1:172382/181‑1 (MQ=255)                                                                                                                                                                                                                          actTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCTTTCTTCAGGAACGTGTGTATAGTGCGCCAAGTTATCAGTATTAAGGAATTTTTTTGTCCCGTaa                                           <  1:333605/181‑1 (MQ=255)                                                                                                                                                                                                                          actTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCTTTCTTCAGGAACGTGTGTATAGTGCGCCAAGTTATCAGTATTAAGGAATTTTTTTGTCCCGTaa                                           <  1:556574/181‑1 (MQ=255)                                                                                                                                                                                                                           ctTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCTttctt                                                                                                      >  2:684178/1‑121 (MQ=255)                                                                                                                                                                                                                           agaatgtcaaataaaatgactggtttagtaaaatggtttaacgcATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCtt                                                                                                          <  1:417563‑M2/73‑1 (MQ=255)                                                                                                                                                                                                                            ttCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCa                                                                                                                                                                                  <  2:617608/44‑1 (MQ=255)                                                                                                                                                                                                                            ttCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTa                                                                                                                                                   <  1:548664/75‑1 (MQ=255)                                                                                                                                                                                                                            ttCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAg                                                                                                                                          <  1:593901/84‑1 (MQ=255)                                                                                                                                                                                                                               gTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCTTTCTTCAgg                                                                                                  <  1:684187/121‑1 (MQ=255)                                                                                                                                                                                                                                         tGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATcc                                                                                                                                            >  1:572468/1‑69 (MQ=255)                                                                                                                                                                                                                                             cttcAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGcc                                                                                                                                        <  2:572459/69‑1 (MQ=255)                                                                                                                                                                                                                                                                       |                                                                                                                                                                                 ATCTTTACTACCATCAACAGGAGAAATAAAGCCGAAACCTTTATCAGCGTTAAACCATTTTACTAAACCAGTCATTTTATTTGACATTCTACATTCCTTAACTTGAGCCTTTCGGCATAAATGGTTTGCATAACAGAAACGACTTCGTACTTAATTGGAGAGACTCAAAGAAGGAATAAGTGAATAACACCTGAAATGAGAACTGCTTTAGTAAACTACTTCGTATATCGTCTGTTCTTCAAACCGACGCAATCATTAACGCATAGTTGAACATATGAAGCAATGTTTATTTTAGACATCCAGCCATCTTCAACCCCATCAAAAAACTATAGCTTTCTTCAGGAACGTGTGTATAGTGCGCCAAGTTATCAGTATTAAGGAATTTTTTTGTCCCGTAAAATGACAGGAATTGTCAAAACCTTTGACGGCAAAAGCGGCA  >  CP009273/1635725‑1636163

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.