New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1940961	28 (0.730)	4 (0.110)	4/300	NT	11.5%	coding (454/603 nt)	yebB	DUF830 family protein
	?	CP009273	= 1941644	35 (0.950)					intergenic (‑11/+24)	ruvC/yebC	component of RuvABC resolvasome, endonuclease/UPF0082 family protein

GCGCCTGGCCCAGTTTCAGGGCTGAGTCAGCGTTCTTTGCCATAAAGACTTGTTCAATGGCGAAATAATCAGGCTGGAACTGGGTGATGATTTCCGTCACGCCCGCATAGATGAGTTTCAGACGAGACGGTAAATCATCCACTTTGGTGCGGATGCATCCGCTACCCAGGTAGGACAGTTGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCTGCCGC  >  CP009273/1941381‑1941847                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                            gcgcCTGGCCCAGTTTCAGGGCTGAGTCAGCGTTCTTTGCCATAAAGACTTGTTCAATGGCGAAATAATCAGGCTGGAACTGGGTGATGATTTCCGTCACGCCCGCATAGATGAGTTTCAGACGAGACGGTAAATCATCCACTTTGGTGCGGATGCATCCGCTACCCAGGTAGGACAGTTGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGtt                                                                                                                                                                                                  >  1:70566/1‑275 (MQ=255)                         aGTCAGCGTTCTTTGCCATAAAGACTTGTTCAATGGCGAAATAATCAGGCTGGAACTGGGTGATGATTGCCGTCACGCCCGCATAGATGAGTTTCAGACGAGACGGTAAATCATCCACTTTGGTGCGGATGCATCCTCTACCCAGGTAGGACAGTTGCCTACCTACCTGGCGGCTGACGCCGTAGCCGGTCACGCGCGAACCCACAACAACGCCGAGAATAATAGCCATCACGCGTCGCCGCTTTGATATTTAGCAGGACacatcatatcgtgc                                                                                                                                                                           >  2:505322/1‑266 (MQ=255)                                                          tGGCGAAATAATCAGGCTTGAACTGGGTGATGATTTCCGTCACGCCCGAATAGATGAGTTTCAGACGAGACGGTAAATCATCCACTTTGGTGCGGATGCATCCGATACGCAGGTAGGACAGTTGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAAATTTCACCGTTATGGTa                                                                                                                                         <  1:445563/275‑1 (MQ=255)                                                           tgCGAAATAATCAGGCTGGAACTGGGTGATGATTTCCGTCACGCCCGCATAGATGAGTTTCAGACGAGACGGTAAATCATCCACTTTGGTGCGGATGCATCCGCTACCCAGGTAGGACAGTTGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTaa                                                                                                                                        <  1:309368/274‑1 (MQ=255)                                                           ggcgaactcactaGNCTGGATATGGTTGTTGAGTTCCGTCCCCTCCGCTTCGATGAGTTTCAGCTGAGACGCGAAATCATCCACTTTGGTGCGGAGGCGGCCGCTACCGAGGTAGGACAGCTGCCTACCTTCCAGGCGGATGACGCCGGAGCCGTTCACACGGGAACCCGGATCAATGCCGAGAATAATACCCATCACGCCTCTCCGTTTTGCTGTTTATCAGGCCTACTCAGAGAGTCGCTGCCACCTCATCAGAGATTTCACCGTGGTGGTaa                                                                                                                                        <  2:519257/263‑1 (MQ=255)                                                                                               cGTCACGCCCGCATAGATGAGTTTCAGACGAGACGGTAAATCATCCACTTTGGTGCGGATGCATCCGCTACCCAGGTAGGACAGTTGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGc                                                                                                                                                                                              >  2:580058/1‑185 (MQ=255)                                                                                                   aCGCCCGCATAGATGAGTTTCAGACGAGACGGTAAGTCATCCACTTTGGTGCGGATGCATCCGCTACCCAGGTAGGACAGTTGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGc                                                                                                                                                                                          <  1:580067/185‑1 (MQ=255)                                                                                                     gCCCGCATAGATGAGTTTCAGACGAGACGGTAAATCATCCACTTTGGTGCGGATGCATCCGCTACCCAGGTAGGACAGTTGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGCACCCGGCTCAATGCCGAGAATAATAGCCATAACGCGTCTCCGTTTTGCTGTTTAGCAGGCCCCATCAGATAGTCTGTGCCACCTCATCAAAGATTTCAACGTTATGGTAAACTTCCAGCCCGTCGTCGCAATCTCCCatgccccttatccc                                                                                               >  2:711349/1‑261 (MQ=255)                                                                                                      cccGCATACANAGGTTTCAGACGGGACGGTCAATCATCCACTTTGGTGCGGATGCATCCGCTACCCAGGTAGGACAGTTGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGa                                                                                              <  2:70565/274‑1 (MQ=255)                                                                                                         gCATAGATGAGTTTCAGACGAGACGGTAAATCATCCACGTTGGTGCGGATGCATCCGCTACCCAGGTAGGACAGTTGCCTACCTACCTGGCGGATGACGCCGTAACCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCTTGCAcgtcgt                                                                                                                        <  1:711359/245‑1 (MQ=255)                                                                                                                    tttCAGACGAGACGGTAAATCATCCACTTTGGTGCGGATGCATCCGCTACCCAGGTAGGACAGTTGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTCTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCgg                                                                                >  1:686523/1‑274 (MQ=255)                                                                                                                              gacgGTAAATCATCCACTTTGGTGCGGATGCATCCGCTACCCAGGTAGGACAGTTGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAg                                                                                                                                                                                               >  1:712718/1‑153 (MQ=255)                                                                                                                                  gTAAATCATCCACTTTGGTGCGGATGCATCCGCTACCCAGGTAGGACAGTTGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAgg                                                                                                                                                                                           <  2:712708/153‑1 (MQ=255)                                                                                                                                  gTAAATCATCCACTTTGGTGCGGATGCATCCGCTACCCAGGTAGGACAGTTGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTa                                                                                                                                              <  1:221162/198‑1 (MQ=255)                                                                                                                                                  ggTGCGGATGCATCCGCTACTCAGGTATGACAGTTGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCTGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGt                                                  <  1:49442/274‑1 (MQ=255)                                                                                                                                                    tGCGGATGCATCCGCTACCCAGGTAGGACAGTTGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGc                                                                                                                                                                                              >  1:92352/1‑132 (MQ=255)                                                                                                                                                        gATGCATCCGCTACCCAGGTAGGACAGTTGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGc                                                                                                                                                                                          <  2:92351/132‑1 (MQ=255)                                                                                                                                                                  cTACCCAGGTAGGACAGTTGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCATCATCAGAAATTCGCTGCGACCTCATCAGAGATCTCACAGTTATGGTAACATTCCTGCCCTTCGTCGCACTCTTCCAGCATATCGATAAGTAGCATCAGTTTCGGTGCGGTTTCTGCCACCATATCAGCTTTGGTAGACGGGATCGTga                                    >  2:216212/1‑271 (MQ=255)                                                                                                                                                                                   ttGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCNAGAATAATAGCCATCACGCTTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGa                                               <  1:547297/244‑1 (MQ=255)                                                                                                                                                                                   ttGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGttt                                                                                                                                                                                                 >  2:267605/1‑98 (MQ=255)                                                                                                                                                                                   ttGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAg                                                                                                                                                                                               >  1:60419/1‑100 (MQ=255)                                                                                                                                                                                   ttGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCtc                                                                                                                                                                 >  1:17245/1‑130 (MQ=255)                                                                                                                                                                                   ttGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCa                                                                                                                    >  1:306262/1‑175 (MQ=255)                                                                                                                                                                                       ctacctacCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCa                                                                                                                                                                                             <  1:267610/98‑1 (MQ=255)                                                                                                                                                                                       ctacctacCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAgg                                                                                                                                                                                           <  2:60418/100‑1 (MQ=255)                                                                                                                                                                                       ctacctacCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCtcatca                                                                                                                                                             <  2:17245/130‑1 (MQ=255)                                                                                                                                                                                       ctacctacCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCt                                                                                                                <  2:306256/175‑1 (MQ=255)                                                                                                                                                                                        tacctaccTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCgttttgcattcggattgctatttaacaattctccaaacgtctctatttcacccaccggaatacatagcg                                                                                                                                        <  1:477995‑M2/150‑70 (MQ=255)                                                                                                                                                                                            tacctGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCgttttgcattcggattgctatttaacaattctccaaacgtctctatttcacccaccggaatacatagcgcttc                                                                                                                                    >  2:477988‑M2/1‑77 (MQ=255)                                                                                                                                                                                                     gATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGttt                                                                                                                                                                                                 >  1:707144/1‑80 (MQ=255)                                                                                                                                                                                                         aCGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCa                                                                                                                                                                                             <  2:707134/80‑1 (MQ=255)                                                                                                                                                                                                                               aaCCCGGATCAATGCCGAGAATAAGAGCGATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGCCGCATCAGTTTc                                                                                  >  1:512421/1‑165 (MQ=255)                                                                                                                                                                                                                                          aTGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTc                                                                                                                                                     >  2:517777/1‑87 (MQ=255)                                                                                                                                                                                                                                              cGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCg                                                                                                                                                 <  1:517784/87‑1 (MQ=255)                                                                                                                                                                                                                                               gagaATAATAGCCATCACGCGTCTCCgttttgcattcggattgctatttaacaattctccaaac                                                                                                                                                                       <  2:97510‑M2/64‑39 (MQ=255)                                                                                                                                                                                                                                                agaATAATAGCCATCACGCGTCTCCGTGTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGc                                                                                                                     >  1:410541/1‑113 (MQ=255)                                                                                                                                                                                                                                                   ataataGCCATCACGCGTCTCCgttttgcattcggattgctatttaacaattctccaaacgtct                                                                                                                                                                   >  1:97511‑M2/1‑22 (MQ=255)                                                                                                                                                                                                                                                    taataGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATc                                                                                                                 <  2:410534/113‑1 (MQ=255)                                                                                                                                                                                                                                                            aTCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCTg      >  2:303032/1‑212 (MQ=255)                                                                                                                                                                                                                                                              cACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCt                                                                      >  2:9959/1‑146 (MQ=255)                                                                                                                                                                                                                                                                cgcgTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCTGCCGc  <  1:303038/212‑1 (MQ=255)                                                                                                                                                                                                                                                                  cgTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCAt                                                                  <  1:9959/146‑1 (MQ=255)                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                            GCGCCTGGCCCAGTTTCAGGGCTGAGTCAGCGTTCTTTGCCATAAAGACTTGTTCAATGGCGAAATAATCAGGCTGGAACTGGGTGATGATTTCCGTCACGCCCGCATAGATGAGTTTCAGACGAGACGGTAAATCATCCACTTTGGTGCGGATGCATCCGCTACCCAGGTAGGACAGTTGCCTACCTACCTGGCGGATGACGCCGTAGCCGGTCACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCTGCCGC  >  CP009273/1941381‑1941847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.