New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | = 2416673 | 30 (0.780) | 6 (0.170) | 6/296 | NT | 16.2% | coding (346/891 nt) | yfcI | transposase_31 family protein |
? | CP009273 | = 2416766 | 34 (0.940) | coding (253/891 nt) | yfcI | transposase_31 family protein |
GCGCCATTTTGCGGTGTTGCATAATCTCGTCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACTTCTGCAACCATGATAAAACAGCATCGGGAGCACCAATGGAAGCTCTTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGTTTTCACAGACCACAAGAGGTCGGAATAATATTGCCGCAGGTCTTCATCAATAAAACTGTTTGGTTCCAGTTTAAGCGTCGTTAAATCACACAGTTTGCGCAGCGGCGCGGGAAGATGAATATCAATAAAATCCCGCGCGGTGTCTGGATGGCGTAAAAAAGATTTAAATACCGCATCATGCGGCGTGGAAGTTGTCGATATTGTCATGGCGTTCCGTCA > CP009273/2416496‑2417030 | ccgccATTTGGCCGGATTGCATAAGCTTGTCATCCCGCAACACGGTTAGATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATAAAGCCAGCAGAGTGAATAAGGATAAGGACTTCTGCAACCATGATAAAACAGCATCGGGCGCACCCATGGAAGCTCTTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAACAGCCATTAATTCTTCCGGCTTACTttgg > 2:42803‑M2/2‑271 (MQ=255) tttcATAATCTCGTCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCTGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGCACTTCTGCAACCATGATAAAACAGCATCGGGAGCACCAATGGAAGCTCTTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACAt < 1:628742/272‑1 (MQ=255) tGCATAATCTCGTCATCCGGAACCAAGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCCGAGTGAATAAGGATAAGGACTTCTGCAACCATGATAAAACAGCATCGGGAGCACCAATGGAAGCTCTTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACAt < 1:451469/274‑1 (MQ=255) tCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACTTCTGCAACCATGATAAAACAGCATCGGGAGCACCAATGGAAGCTCTTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATa > 2:258554/1‑242 (MQ=255) accaACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACTTCTGCAACCATGATAAAACAGCATCGGGAGCACCAATGGAAGCTCTTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCAATACATAAATACAACACACTCCCTCCTCCGTTTTcacaatccc > 2:174520/1‑270 (MQ=255) ccaACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACTTCTGCAACCATGATAAAACAGCATCGGGAGCACCAATGGAAGCTCTTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAata < 1:258559/242‑1 (MQ=255) aaaaGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTAATAAAGCCAGCAGAGTGAATAAGGATAAGGACTTCTGCAACCATGAAAAAAAAGCATCGGGAGCACCAATGGAAGCTCTTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGTTTTCACAGACCACAAGAGGt < 1:174523/275‑1 (MQ=255) cgaaggAATATATGTGGTGGGCTATAGCAGGCTCGGCAAATTCATAAAGCCAGCAAAGTGAATAAGGATAAGTACGTCTGCAACCATGATAAAACAGAATCGGGATCACAAATGGAAGCTCTTTATAGCCCGAATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGTTTTCACAGACCACAAGAGGTCGGaa < 1:22947/270‑1 (MQ=255) aTGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACTTCTGCAACCATGATAAAACAGCATCGGGAGCACCAATGGAAGCTCTTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGTTTTCACAGACCACAAAAGGTCGGaat > 1:311043/1‑273 (MQ=255) atTTTGCCGACTATAGCAGGCTCGGGAAAAGTATCAAAGCAGCAGAGTGAATAAGGATAAGGACTTCTGCTACCATGATAAAACAGCATCGGGAGCACCAAAGGAAGCTCTTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACCTTGGTGCTCTACCACTACAGCGATAGAACCCACTCCCTCCTGCGTTTTAACAGACCACTAGACGTGGGAATAATATTGGCg < 2:311037/275‑1 (MQ=255) gCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACTTCTGCAACCATGATAAAACAGCATCGGGAGCACCAATGGAAGCTCTTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTtt < 1:710189‑M2/191‑3 (MQ=255) gCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACTTCTGCAACCATGATAAAACAGCATCGGGAGCACCAATGGAAGCTCTTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTttggtg > 2:710179‑M2/1‑185 (MQ=255) tCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACTTCTGCAACCATGATAAAACAGCATCGGGAGCACCAATGGAAGCTCTTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAata > 1:634290/1‑198 (MQ=255) cAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACTTCTGCAACCATGATAAAACAGCATCGGGAGCACCAATGGAAGCTCTTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAATATAAc < 2:634281/198‑1 (MQ=255) cagAGTGAATAAGGATAAGGACTTCTGCAACCATGATAAAACAGCATCGGGAGCACCAATGGAAGCTCTTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGTTTTCACAGACCACAAGAGGTCGGAATAATATTGCCGCAGGt > 1:553838/1‑238 (MQ=255) gTGAATAAGGATAAGGACTTCTGCAACCATGATAAAACAGCATCGGGAGCACCAATGGAAGCTCTTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGTTTTCACAGACCACAAGAGGTCGGAATAATATTGCCGCAGGTCTtc < 2:553829/238‑1 (MQ=255) aggaCTTCTGCAACCATGATAAAACAGCATCGGGAGCACCAATGGAAGCTCTTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTttggtgctc < 1:69106‑M2/144‑10 (MQ=255) cTTCTGCAACCATGATAAAACAGCATCGGGAGCACCAATGGAAGCTCTTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATc < 2:69105/144‑1 (MQ=255) aCCATGATAAAACAGCATCGGGAGCACCAATGGAAGCTCTTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGTTTTCACAGACCACAag > 1:391701/1‑184 (MQ=255) tGATAAAACAGCATCGGGAGCACCAATGGAAGCTCTTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGTTTTCACAGACCACAAGAGGt < 2:391695/184‑1 (MQ=255) tctTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGTTTTCACAGACCACAAGAGGTCGGAATAATATTGCCGCAGGTCTTCATCAATAAAACTGTTTGGTTCCAGTTTAAGCGTCGTTAAATCACACAGTTTGCGCAg > 2:276811/1‑233 (MQ=255) tataGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCGACTCCCTACTGCGTTTTCACAGACCACAAGAggg < 1:480900/147‑2 (MQ=255) tataGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGTTTTCACAGACCACAAGAGGTCGGAATAATATTGCCGCAGGTCTTCATCAATAAAACTGTTTGGTTCCAGTTTAAGCGTCGTTAAATCACACAGTTTGCGCAgcggc < 1:276816/233‑1 (MQ=255) gCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTttggtgctcccgatgctgttttatcatggttgcagaagtccttatccttattcactctgctggcttgatgaatt < 2:273017‑M2/152‑75 (MQ=255) gCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGTTTTCACAGACCACAAGAGGTCGGAATAATATTGCCGCAGGTCTTCATCAATAAAACTGTTTGGTTCCAGTTTAAGCGTCGTTAAATCACACAGTTTGCGCAGCGGCGCGGGAAGATGAATATCAATAAAATCCCGCGCGGTGTCTGGATgg > 1:850/1‑274 (MQ=255) cccGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTttggtgctcccgatgctgttttatcatggttgcagaagtccttatccttattcactctgctggcttgatgaatttnccgagcctgctatagcccgcaaaatatattcatcggcttttccgttggtggatattaccgtggtgccggatgacgagattatgcaacaccgcaaaatggcgctgttggagttaattcagaaa < 1:616745‑M2/275‑199 (MQ=255) ccGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTa > 2:83397/1‑87 (MQ=255) gCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTttggtgctcccgatgctgttttatcatggttgcagaagtccttatccttattcactctgctggcttgatgaatttgcc > 1:273022‑M2/1‑74 (MQ=255) aTCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCAc < 1:83398/87‑1 (MQ=255) ttttGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTttggtgctcccgatgctgttttatcatggttgcagaagtccttatccttattcactctgctggcttgatgaatttgccgagcctgctat < 2:461301‑M2/151‑90 (MQ=255) gCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTttggtgctcccgatgctgttttatcatggttgcagaagtccttatccttattcactctgctggcttgatgaatttgccgagcctgctatagcc > 1:461308‑M2/1‑58 (MQ=255) cGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGTTTTCACAGACCACAAGAGGTCGGAATAATATTGCCGCAGGTCTTCATCAATAAAACTGTTTGGTTCCAGTTTAAGCGTCGTTAAATCACACAGTTTGCGCAGCGGCGCGGGAAGATGAATATCAATAAAATCCcgcgc < 2:401903/221‑1 (MQ=255) cGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGTTTTCACAGACCACAAGAGGTCGGAATAATATTGCCGCAGGTCTTCATCAATAAAACTGTTTGGTTCCAGTTTAAGCGTCGTTAAATCACACAGTATGCGCAGCGGCGCGGGAAGATGAATATCAATAAAATCCcgcgc > 1:401910/1‑221 (MQ=255) tcatGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGTTTTCACAGACCACAag > 2:708385/1‑95 (MQ=255) catGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGtt > 2:620039/1‑79 (MQ=255) gCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGTTTTCACAGATCACAAGAGGt < 1:708395/95‑1 (MQ=255) cGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGTTTTca < 1:620048/79‑1 (MQ=255) aaGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGTTTTCACAGACCACAAGAGGTCGGAATAATATTGCCGCAGGTCTTCATCAATAAAACTGTTTGGTTCCAGTTTAAGCGTCGTTAAATCACACAGTTTGCGCAGCGGCGCGGGAAGATGAATATCAATAAAATCCCGCGCGGTGTCTGGATGGCGTAAAAAAGATTTAAATACCGCATCATGCGGCGTGGAAGTTGTCGATATTGt > 1:270570/1‑274 (MQ=255) ttcCGGCTTACTTTGGTGCTCTATCACTACATAAATATaa > 2:514840/1‑40 (MQ=255) tcCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGtt > 2:628323/1‑57 (MQ=255) tcCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGTTTTCACAGACCACAAGAGGTCGGAATAATATTGCCGCAGGTCTTCATCAATAAAACTGTTTGGTTCCAGTTTAAGCGTCGTTAAATCACACAGTTTGCGCAGCGGCGCGGGAAGATGAATATCAATAAAATCCCGCGCGGTGTCTGGATGGCGTAAAAAAGATTTa > 2:529075/1‑222 (MQ=255) tacGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTACCTCATGCGTTTTCACAGACCACAAGAGGTCGGAATAATATTGACGCAGGTCTTCATCAATAAAACTGTTTGGTTCCAGTTTAAGCGTAGTTAAATCAAACAGTTTGCGCAGCGGAGAGGGAAGATGAATAGCAATAAAATCCCGCTCGGTGTCTGGATGGAGTAAAAAAGATATAAATACGGAATCATGAGGAGGGGGAGATGGCGAGATAGTAATGGGGGTCCGtac > 2:290692/3‑273 (MQ=255) cGGCTTACTttggtgctcccgatgctgttttatcatggttgcagaagtccttatccttattcactctgctggcttgatgaatttgccgagcctgctatagcccgcaaaatatattcatcggcttttccgttggtggatattaccttggttccggatgacgagattattcaacaccgcaaaatggcgctgttgtagttaattcagaaacatattcgtcagctagatcagttgggattagtcgaccaaattgtttcgctgctatttacatggtag < 2:102129‑M2/273‑265 (MQ=255) ggCTTACTTTGCTGCTCTATCACTACATAAATATAACCCa < 1:514847/40‑1 (MQ=255) gCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGTTTTca < 1:628332/57‑1 (MQ=255) gCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGTTTTCACAGACCACAAGAGGTCGGAATAATATTGCCGCAGGTCTTCATCAATAAAACTGTTTGGTTCCAGTTTAAGCGTCGTTAAATCACACAGTTTGCGCAGCGGCGCGGGAAGATGAATATCAATAAAATCCCGCGCGGTGTCTGGATGGCGTAAAAAAGATTTAAATa < 1:529083/222‑1 (MQ=255) | GCGCCATTTTGCGGTGTTGCATAATCTCGTCATCCGGCACCACGGTAATATCCACCAACGGAAAAGCCGATGAATATATTTTGCGGGCTATAGCAGGCTCGGCAAATTCATCAAGCCAGCAGAGTGAATAAGGATAAGGACTTCTGCAACCATGATAAAACAGCATCGGGAGCACCAATGGAAGCTCTTTATAGCCCGCATCAAGATGGTTTTGCATTGCCGCAATGGAATAACGCATCATGCGAAAAGCCATTAATTCTTCCGGCTTACTTTGGTGCTCTATCACTACATAAATATAACCCACTCCCTCCTGCGTTTTCACAGACCACAAGAGGTCGGAATAATATTGCCGCAGGTCTTCATCAATAAAACTGTTTGGTTCCAGTTTAAGCGTCGTTAAATCACACAGTTTGCGCAGCGGCGCGGGAAGATGAATATCAATAAAATCCCGCGCGGTGTCTGGATGGCGTAAAAAAGATTTAAATACCGCATCATGCGGCGTGGAAGTTGTCGATATTGTCATGGCGTTCCGTCA > CP009273/2416496‑2417030 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |