New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2489882 =	39 (1.010)	6 (0.170)	5/290	NT	16.7%	coding (759/921 nt)	lpxP	palmitoleoyl‑acyl carrier protein (ACP)‑dependent acyltransferase
	?	CP009273	2490290 =	24 (0.680)					intergenic (+246/‑110)	lpxP/ypdK	palmitoleoyl‑acyl carrier protein (ACP)‑dependent acyltransferase/inner membrane protein

TGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGCTGAATATCTAATTATTACCGTCAGAAATTAAACTGTCGCCGATATGAGACACTTGTAAGTTACTAAAAGTAAATAAGAAAATGCCTCTTGTCTCGTTTCAGTTTTAGGCGTACATTAGCGCCGTCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGAAGTCATTCAGGCGTAACAGTAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCAGGCTC  >  CP009273/2490019‑2490510                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                             tGGGAGAATCGTCTTTGTACATTTAACAATCTGCTCTTACTTTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGCTGAATATCTAATTATTACCGTCAGAAATTAAACTGTCGCCGATATGAGACACTTGTAAGTTACTAAAAGTAAATAAGAAAATGCCTCTTGTCTCGTTTCAGTTTTAGGCGTACATTAGCGCCGTCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCa                                                                                                                                                                                                                           <  1:568252/275‑1 (MQ=255)                                    ctTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGCTGAATATCTAATTATTACCGTCAGAAATTAAACTGTCGCCGATATGAGACACTTGTAAGTTACTAAAAGTAAATAAGAAAATGCCTCTTGTCTCGTTTCAGTTTTAGGCGTACATTAGCGCCGTCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGccc                                                                                                                                                                                        <  1:259358/275‑1 (MQ=255)                                    acatttctTTCCCTCCTCTAATCGGCCATAATAACCTCATGTTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGCTGAATATCTAATTNTTACCGTCAGAAATTAAACTGTCGCCGATATGAGACACTTGTAAGTTACTAAAAGTAAATAAGAAAATGCCTCTTGTCTCGTTTCAGTTTTAGGCGTACATTAGCGCCGTCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTAGCATACCGGGCTTTAAAGGTCGCTTTGccc                                                                                                                                                                                        <  1:487025/270‑1 (MQ=255)                                             tCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGCTGAATATCTAATTATTACCGTCAGAAATTAAACTGTCGCCGATATGAGACACTTGTAAGTTACTAAAAGTAAATAAGAAAATGCCTCTTGTCTCGTTTCAGTTTTAGGCGTACATTAGCGCCGTCTCGAGCAGTTTAGTCCAGAATTCTGGGGGGATGCCCAAGGTAAAAACAAGGGCTTTTAAGGTTGCTTTGTCCGgtggaaac                                                                                                                                                                               >  2:300597/1‑270 (MQ=255)                                                      aaaTCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGCTGAATATCTAATTATTACCGTCAGAAATTAAACTGTCGCCGATATGAGACACTTGTAAGTTACTAAAAGTAAATAAGAAAATGCCTCTTGTCTCGTTTCAGTTTTAGGCGTACATTAGCGCCGTCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTAt                                                                                                                                                                      <  1:300603/275‑1 (MQ=255)                                                                        gggccgttatgaggggggacagagtaagagcagtttgctaacggtacaacgacgattctcccaccgggcgcgttttaaagcgacggtggatccagaggtactgctccggtgcgcgcatgatctctttctcgataatcttgttcatataggcagcggcttgattttcatctgtcgggtagccttccatctctggggtgatgCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGa                                                                                                                                                          <  2:360258‑M2/69‑1 (MQ=255)                                                                                  tATGTCTTTTTTCTTAAGGTTTTTTCCTTCGCTGATTATCTAATTATTACCGTCAGAAATTAAACGGTCGCCGATATGAGACACTTGTAAGTTACTAAAAGTAAATAAGAAAATGCCTCTTGTCTCGTTTCAGTGTTAGGCGTACATTAGCGCCGTCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGAAGTCATTCAGGCGTaa                                                                                                                                          <  1:723418/275‑1 (MQ=255)                                                                                                        gtttgttaaatgtacaacgacgattctcccaccgggcgcgttttaaagcgacggtggatccagaggtactgctccggtgcgcgcatgatctctttctcgataatcttgttcatataggcagcggcttgattttcatctgtcgggtagccttccatctctggggtgatgCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCTGGTGTCAACTCACTGTATCAGGTGTa                                                                                                                                                              >  1:42516‑M2/169‑233 (MQ=255)                                                                                                                                  aCCGTCAGAAATTAAACTGTCGCCGATATGAGACACTTGTAAGTTACTAAAAGTAAATAAGAAAATGCCTCTTGTCTCGTTTCAGTTTTAGGCGTACATTAGCGCCGTCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTAAAATa                                                                                                                                                                                                                 >  2:183142/1‑156 (MQ=255)                                                                                                                                      tCAGAAATTAAACTGTCGCCGATATGAGACACTTGTAAGTTACTAAAAGTAAATAAGAAAATGCCTCTTGTCTCGTTTCAGTTTTAGGCGTACATTAGCGCCGTCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTAAAATACAgg                                                                                                                                                                                                             <  1:183145/156‑1 (MQ=255)                                                                                                                                      tCAGAAATTAAACTGTCGCCGATATGAGACACTTGTAAGTTACTAAAAGTAAATAAGAAAATGCCTCTTGTCTCGTTTCAGTTTTAGGCGTACATTAGCGCCGTCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGgtg                                                                                                                                                                                    >  1:183522/1‑181 (MQ=255)                                                                                                                                          aaaGTAAACTGTCGCCGATATGAGACACTTGTAAGTTACTAAAAGTAAATAAGAAAATGCCTCTTGTCTCGTTTCAGTTTTAGGCGTACATTAGCGCCGTATCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCaa                                                                                                                                                                                <  2:183519/181‑1 (MQ=255)                                                                                                                                                     tCGCCGATATGAGACACTTGTAAGTTACTAAAAGTAAATAAGAAAATGCCTCTTGTCTCGTTTCAGTTTTAGGCGTACATTAGCGCCGTCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTaa                                                                                                                                                                                                                     >  1:478144/1‑133 (MQ=255)                                                                                                                                                        ccGATATGAGACACTTGTAAGGTACTAAAAGTAAATAAGAAAATGCCTCTTGTCTCGTTTCAGTTTTAGGCGTACATTAGCGCCGTCTCGAGAAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGAAGTCATTCAGGCGTAACAGTAATTACGCCGAAAGAAGAAAAGTGAAAACATTCTTTAGTGGCATTTCTTTTATGGTTAATGTTTgg                                                                    >  2:162792/1‑275 (MQ=255)                                                                                                                                                         cGATATGAGACACTTGTAAGTTACTAAAAGTAAATAAGAAAATGCCTCTTGTCTCGTTTCAGTTTTAGGCGTACATTAGCGCCGTCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTAAAATa                                                                                                                                                                                                                 <  2:478137/133‑1 (MQ=255)                                                                                                                                                             atGAGACACTTGTAAGTTACTAAAAGTAAATAAGAAAATGCCTCTTGTCTCGTTTCAGTTTTAGGCGTACATTAGCGCCGTCTCGAGCAGTNTAGCTCAGAATTCTGGGGTGATGCCCAAGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGAAGTCATTCAGGCGTAACAGTAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCgg                                                               <  1:561063/275‑1 (MQ=255)                                                                                                                                                                           aGTTACTAAAAGTAAATAAGAAAATGGCTCTTGTCTCGTTTCAGTTTTAGGCGTACATTAGCGCCGTCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGAAGTCATTCAGGCGTAACAGTAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCtga                                                 <  1:8520/275‑1 (MQ=255)                                                                                                                                                                                cTAAAAGTAAATAAGAAAATGCCTCTTGTCTCGTTTCAGTTTTAGGCGTACATTAGCGCCGTCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGAAGTCATTCAGGCGTAACAGTAATTAcg                                                                                                                               >  1:664223/1‑192 (MQ=255)                                                                                                                                                                                cTAAAAGTAAATAAGAAAATGCCTCTTGTCTCGTTTCAGTTTTAGGCGTACATTAGCGCCGTCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCAACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGAAGTCATTCATGCGTAACAGTAATAACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGAATTTCTTTTATGGTCATCGTTTGGGCAGGTACttttttctggatgctt                                            >  2:11430/1‑263 (MQ=255)                                                                                                                                                                                    aaGTAAATAAGAAAATGCCTCTTGTCTCGTTTCAGTTTTAGGCGTACATTAGCGCCGTCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGAAGTCATTCAGGCGTAACAGTAATTACGCGga                                                                                                                           <  2:664214/192‑1 (MQ=255)                                                                                                                                                                                    aaGTAAATAAGAAAATGCCTCTTGTCTCGTTTCAGTTTTAGGAGTACATTAGCGCCGTCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGAAGTCATTCAGGCGTAACAGTAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGCAt                                                                                          <  1:418911/225‑1 (MQ=255)                                                                                                                                                                                         cgcatgatctctttctcgataatcttgttcatataggcagcggcttgattttcatctgtcgggtagccttccatctctggggtgatgCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGAAGTCATTCAGGCGTAACAGTAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCTTGACCAATTAAAAGCaa                                   >  2:45145‑M2/88‑275 (MQ=255)                                                                                                                                                                                         cgcatgatctctttctcgataatcttgttcatataggcagcggcttgattttcatctgtcgggtagccttccatctctggggtgatgCCCACGGTAAAATACAGGGCTTTTAAGGTAGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGAAGTCATTCAGGCGTAACAGTAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTATTTTATGGTAATTGTTTGGGGAggtacttttgctctgattttcgaagcgaac                                   >  2:117575‑M2/88‑262 (MQ=255)                                                                                                                                                                                         aaTAAGAAAATGCCTCTTGTCTCGTTGCAGTTTTGGGCGTACATTAGCGCCGTCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGAAGTCATTCAGGCGTGACAGTAATTACGNGGAGAGATNTAAAGTGAAATATTTCTTTa                                                                                                 >  1:475782/1‑213 (MQ=255)                                                                                                                                                                                             aGAAAATGCCTCTTGTCTCGTTGCAGTGTTAGGCGTACATTAGCGCCGGCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGAAGTCATTCAGGCGTAACAGTAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATggg                                                                                             <  2:475775/213‑1 (MQ=255)                                                                                                                                                                                               atctctttctcgataatcttgttcatataggcagcggcttgattttcatctgtcgggtagccttccatctctggggtgatgCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGAAGTCATTCAGGCGTAACAGTAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACtgtg                             <  1:117576‑M2/194‑1 (MQ=255)                                                                                                                                                                                                              ttcttgttcttttaggcagcggcttgattttcatctgtcgggtagccttccatctctggggtgatgCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGAAGTCATTCAGGCGTAACAGTAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAgg               <  1:45145‑M2/208‑1 (MQ=255)                                                                                                                                                                                                                          tAGGCGTACATTAGCGCCGTCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGAAGTCATTCAGGCGTAACAGTAATTACGCGgagaga                                                                                                                       >  1:281484/1‑158 (MQ=255)                                                                                                                                                                                                                          tAGGCGTACATTAGCGCCGTCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGAAGTCATTCAGGCGTAACAGTAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGTTCTAAAAGGAAACTGTGCAATGAAAACCAGGAGCCATCAGGCTc  >  2:662365/1‑275 (MQ=255)                                                                                                                                                                                                                              cGTACATTAGCGCCGTCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGAAGTCATTCAGGCGTAACAGTAATTACGCGGAGAGATGTa                                                                                                                   <  2:281479/158‑1 (MQ=255)                                                                                                                                                                                                                                                 gAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCa                                                                                                                                                                                                                           <  2:449814/35‑1 (MQ=255)                                                                                                                                                                                                                                                            cTCAGAATTCTGGGGTGATGCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGAAGTCATTCAGGCGTAACAGTAATTACGCGGAGAGATGTAAAGTGa                                                                                                             >  2:453229/1‑134 (MQ=255)                                                                                                                                                                                                                                                                gAATTCTGGGGTGATGCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGAAGTCATTCAGGCGTAACAGTAATTACGCGGAGAGATGTAAAGTGAAata                                                                                                         <  1:453236/134‑1 (MQ=255)                                                                                                                                                                                                                                                                      tggggtgatgCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCaa                                                                                                                                                                                >  1:57060‑M2/11‑57 (MQ=255)                                                                                                                                                                                                                                                                          gtgatgCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCa                                                                                                                                                                            <  2:57060‑M2/51‑1 (MQ=255)                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                             TGGGAGAATCGTCGTTGTACATTTAACAAACTGCTCTTACTCTTTCCCTCCTCAAATCGGCCATAATAACCTCATGGTTTTTATGGCTTTTTTCTTAAGGTTTTTTCCTTCGCTGAATATCTAATTATTACCGTCAGAAATTAAACTGTCGCCGATATGAGACACTTGTAAGTTACTAAAAGTAAATAAGAAAATGCCTCTTGTCTCGTTTCAGTTTTAGGCGTACATTAGCGCCGTCTCGAGCAGTTTAGCTCAGAATTCTGGGGTGATGCCCACGGTAAAATACAGGGCTTTTAAGGTCGCTTTGCCCGGTGTCAACTCACTGTATCAGGTGTAATGAAGTCATTCAGGCGTAACAGTAATTACGCGGAGAGATGTAAAGTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAAAAGCAAACTGTGCAATGAAAAACAGGAGCCATCAGGCTC  >  CP009273/2490019‑2490510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.