New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2821800	47 (1.220)	10 (0.270)	8/300	NT	22.8%	coding (705/780 nt)	srlD	sorbitol‑6‑phosphate dehydrogenase
	?	CP009273	= 2822162	23 (0.630)					coding (183/360 nt)	srlM	sorbitol‑responsive srl operon transcriptional activator

TAGAATGCCTGATGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCCTGGTGTGCGCAACTGGCCTTAGGCGGCTGGCAAATTTCTCGTTTTAACCGTGCCTTCGACACACTATGCCAGCAAGGGCGGGTTGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCATCGTCGACACCTTGTTTATGAAAGGACTGACCGTCTTCGCCCGACCGCAAAAAATTCCCGCAATTACCGGTATGCATGCGGGTGATTTACAGCCCGATGTGATCTTTCCCCATGATCCACTATCACAGAATGCTCTATCATTGGCGCTTAAACTGAAACGTGGATAATTTCGTTGTGAATGTTACTTGCTTGCGAAGTTATCATTTTGAAACCTAAATCAGGTAATCACG  >  CP009273/2821914‑2822402                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                 taGAATGCCTGTTGCGCTACGTTTATCTGGCATACAGGACGTCCGCCACTACATTAAGGAAAAGTTATGGTATCCTCAATCATCACCGTGGCCGTTATCGCCTGGTGTGCGCAACTGGCCTTAGTCGGCTGGCAAATTTCTCGTTTTAACCGTGCCTTCGACACACTATGCCAGCAAGGGCGCGTTGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCATCGTCGACACCTTGtt                                                                                                                                                                                                                        <  1:588375/275‑1 (MQ=255)                              gCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCCTGGTGTGCGCAACTGGCCTTAGGCGGCTGGCAAATTTCTCGTTTTAACCGTGCCTTCGACACACTATGCCAGCAAGGGCGGGTTGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCATCGTCGACACCTTGTTTATGAAAg                                                                                                                                                                                                                >  2:128138/1‑254 (MQ=255)                                  aCAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCCTGGTGTGCGCAACTGGCCTTAGGCGGCTGGCAAATTTCTCGTTTTAACCGTGCCTTCGACACACTATGCCAGCAAGGGCGGGTTGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCATCGTCGACACCTTGTTTATGAAAGGACt                                                                                                                                                                                                            <  1:128139/254‑1 (MQ=255)                                       aCTTCCGCCACTACATTAAGGAAAAGGTATGGTATCAGCACTCATCACCGTCGACGTTATCGCATGGTNTGCGCAACTGGCCTTAGGCGGCTGGCAAATTTCTAGTTTTAACCGTGCCTTCGACACACTATGCCAGCAAGGGCGGGTTGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCa                                                                                                                                                                                                                                        <  1:596630/221‑1 (MQ=255)                                         ttCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCCTGGTGTGCGCAACTGGCCTTAGGCGGCTGGCAAATTTCTCGTTTTAACCGTGCCTTCGACACACTATGCCAGCAAGGGCGGGTTGGCGTGGGCCGTTCCAGCGGGCCCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGCCGATcagcagcaaattccgcacaccttgataatcgcagccgggtttgagcggtactttgtcggtgttat                                                                                                                                                                                 <  2:701223‑M2/274‑66 (MQ=255)                                                              aaGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCCTGGTGTGCGCAACTGGCCTTAGGCGGCTGGCAAATTTCTCGTTTTAACCGTGCCTTCGACACACTATGCCAGCAAGGGCGGGTTGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGTGCTGGACGATCAGCAGCGCATCGTAGACACCCTGTTTATGCAAGGACTGACCGTCTTCGCCAGACCGCAACAAATTCCCGCAATTACCGGAatgcat                                                                                                                                                           >  1:381779/1‑275 (MQ=255)                                                                                   tcaCCGTCGCCGTTATCGCCTGGTGTGCGCAACTGGCCTTAGGCGGCTGGCAAATTTCTCGTTTTAACCGTGCCTTCGACACACTATGCCAGCAAGGGCGGGTTGGCGTGGGCCGTTGCAGCGGGCGCTTTAAACCGCGGGTCGTGCTCGCCATCGCGCTGGACGATCAGCAGCGCATCGTCGACACCTTGTTGATGAAAGGACTGACCGTCTTCGCCCGACCGCAAAAAATTCCCGCAATTACCGGTATGCATGCGGGTGATTTACAGCCCGa                                                                                                                                       >  1:630373/1‑274 (MQ=255)                                                                                     aCCGTCGCCGTTATCGCCTGGTGTGCGCAACTGGCCTTAGGCGGCTGGCAAATTTCTCGTTTTAACCGTGCCTTCGACACACTATGCCAGCAAGGGCGGGTTGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCATCGTCGa                                                                                                                                                                                                                                 <  1:289697/182‑1 (MQ=255)                                                                                                          tgtgCGCAACTGGCCTTAGTCGGCTGGCAAATTTCTCGTTTTAACCGTGCCTTCGACACACTATGCCAGCAAGGGCGGGTTGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATCAGCAGGGCATCGTCGACACCATGTTTATGAAAGGACTGACCGTATTCGCCCGACCGCAAAAAATTCCCGCAATTACCGGTATGCCTTAGGGTGATTTACAGCACGAAGTGATGTTTccccctttcccct                                                                                                                >  1:566614/1‑265 (MQ=255)                                                                                                              cgcAACTGGCCTTAGGCGGCTGGCAAATTTCTCGTTTTAACCGTGCCTTCGACACACTATGCCAGCAAGGGCGGGTTGGCGTGGGCCGTTCCAGCGTGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCATCGTCGACACCTTGTTTATGAAAGGACTGACCGTCTTCGCCCGACCGCAAAAAATTCCCGCAATTACCGGTATGCATGCGGGTGATTTACAGCCCGATGTGATCTTTCCCCATGATCCACTATc                                                                                                            <  1:379759/274‑1 (MQ=255)                                                                                                                    tGGCCTTAGGCGGCTGGCAAATTTCTCGTTTTAACCGTGCCTTCTACACACTATGCCAGCAAGGGCGGGTTGGCGTGGGTCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATcagcagcatattcagcacatcttgataatcgcagccgcgtttgagcggtactttgtcgatgtaatactgctcgacttgatccggtttgatacccagcttggtcgcgtattgtggcaacagtgactggaacatcggcgattt                                                                                                     >  1:701232‑M2/1‑134 (MQ=255)                                                                                                                    tGGCCTTAGGCGGCTGGCAAATTTCTCGTTTTAACCGTGCCTTCGACACACTATGCCAGCAAGGGCGGGTTGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATcagcagcatattcagcacatcttgataatcgcagccgcgtttgagcggtactttgtcgatgtaatactgctcgacttgatccggtttgatacccagcttggtcgcgtattgtggcaacagcgactggaacatcggcgattt                                                                                                     <  2:133007‑M2/275‑142 (MQ=255)                                                                                                                      gCCTTAGGCGGCTGGCAAATTTCTCGTTTTAACCGTGCCTTCGACACACTATGCCAGCAAGGGCGGGTTGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCATCGTCGACACCTTGTTTATGAAAGGACTGACCGTCTTCGCCCGACCGCAAAAAATTCCCGCaa                                                                                                                                                                         >  2:163375/1‑205 (MQ=255)                                                                                                                          tAGGCGGCTGGCAAATTTCTCGTTTTAACCGTGCCTTCGACACACTATGCCAGCAAGGGCGGGTTGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCATCGTCGACACCTTGTTTATGAAAGGACTGACCGTCTTCGCCCGACCGCAAAAAATTCCCGCAATTAc                                                                                                                                                                     <  1:163378/205‑1 (MQ=255)                                                                                                                                                    aaCCGTGCCTTCGACACACTATGCCAGCAAGGGCGGGTTGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATcagcagcatattcagcacatcttgataatcgcagccgcgtttgagcggtactttgtcgatgtaatactgctcgacttgatccggtttgatacccagcttggtcgcgtattgtggcaacagtgactggaacatcggcgatttcagcaggttaccgagcatcagtgaatgcaccg                                                                     >  1:133008‑M2/1‑102 (MQ=255)                                                                                                                                                                ggcaaaggaTGCCAGAGAGGGCGGGTGGGCGTGCGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTAGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCATCGTCGACACCTTGTTTATGAAAGGACTGACCGTCTTCGCCCGACCGAAAAAAATTCCCGCAATTACCGGTATGCATGCGGGTGATTTACAGCCCGATGTGATCTTTCCCCATGATCCACTATCACAGAATGCTCTATCATTGGCGCTTAAACTGAAACGTGGATAATTTCGtt                                                          <  2:89452/266‑1 (MQ=255)                                                                                                                                                                     acTATGCCAGCAAGGGCGGGTTGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCATCGTCGACACCTTGTTTATGAAAGGACTGACCGTCTTCGCCAGACCGCAAAAAATTCCCGCAATTACCAGTATGCATGCGGGTTATTTACAGcc                                                                                                                                          >  1:150138/1‑189 (MQ=255)                                                                                                                                                                         tGCCAGCAAGGGCGGGTTGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCATCGTCGACACCTTGTTTATGAAAGGACTGACCGTCTTCGCCCGACCGCAAAAAATTCCCGCAATTACCGGTATGCATGCg                                                                                                                                                        >  2:545569/1‑171 (MQ=255)                                                                                                                                                                         tGCCAGCAAGGGCGGGGTGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCATCGTCGACACCTTGTTTATGAAAGGACTGACCGTCTTCGCCCGACCGCAAAAAATTCCCGCAATTACCGGTatgcatgc                                                                                                                                                         >  1:529005/1‑170 (MQ=255)                                                                                                                                                                             aGCAAGGGCGGGTTGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCATCGTCGACACCTTGTTTATGAAAGGACTTACCGTCTTCGCCCGACCGCAAAAAATTCCCGCAATTACCGGTATGCATGCGGGTg                                                                                                                                                    <  1:545578/171‑1 (MQ=255)                                                                                                                                                                             aGCAAGGGCGGGTTGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCATCGTCGACACCTTGTTTATGAAAGGACTGACCGTCTTCGCCCGACCGCAAAAAATTCCCGCAATTACCGGTATGCATGCGGGt                                                                                                                                                     <  2:528997/170‑1 (MQ=255)                                                                                                                                                                               cAAGGGCGGGTTGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCATCGTCGACACCTTGTTTATGAAAGGACTGACCGTCTTCGCCCGACCGCAAAAAATTCCCGCAATTACCGGTATGCATGCGGGTGATTTACAGCCCGATGTGATCTTTCCCCAt                                                                                                                       >  2:263684/1‑198 (MQ=255)                                                                                                                                                                               cAAGGGCGGGTTGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCATCGTCGACACCTTGTTTATGAAAGGACTGACCGTCTTCGCCCGACCGCAAAAAATTCCCGCAATTACCGGGATGCATGAGGGTGATTTACAGCCCGATNTGATCTTTCCCCATGATCCACTATCACAGAATGCTCTATCATTGGCGCTTAAAc                                                                               >  1:550930/1‑238 (MQ=255)                                                                                                                                                                                   ggCGGGTTGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCATCGTCGACACCTTGTTTATGAAAGGACTGACCGTCTTCGCCCGACCGCAAAAAATTCCCGCAATTACCGGTATGCATGCGGGTGATTTACAGCCCGATGTGATCTTTCCCCATGATc                                                                                                                   <  1:263689/198‑1 (MQ=255)                                                                                                                                                                                         ttGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATcagcagcatattcagcacatcttgataatcgcagccgcgtttgagcggtactttgtcgatgtaatactgctcgacttgatccggtttgatacccagcttggtcgcgtattgtggcaacagtgactggaacatcggcg                                                                                                         <  1:9017‑M2/202‑138 (MQ=255)                                                                                                                                                                                         ttGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATcagcagcatattcagcacatcttgataatcgcagccgcgtttgagcggtactttgtcgatgtaatactgctcgacttgatccggtttgatacccagcttggtcgcgtattgtggcaacagtgactggaacataggcgatttcag                                                                                                  <  2:218818‑M2/209‑145 (MQ=255)                                                                                                                                                                                             cGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATcagcagcatattcagcacatcttgataatcgcagccgcgtttgagcggtactttgtcgatgtaatactgctcgacttgatccggtttgatacccagcttggtcgcgtattgtggcaacagtgactggaacatcggcgatttcagcagg                                                                                              >  1:218823‑M2/1‑61 (MQ=255)                                                                                                                                                                                             cGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATcagcagcatattcagcacatcttgataatcgcagccgcgtttgagcggtactttgtcgatgtaatactgctcgacttgatccggtttgatacccagcttggtcgcgtattgtggcaacagtgactggaacatcggcgattt                                                                                                     >  2:9017‑M2/1‑61 (MQ=255)                                                                                                                                                                                                                      aaaCCGCGGGTCGTGGTCGCCATCGCGCTGGACGATcagcagcatattcagcacatcttgataatcgcagccgcgtttgagcggtactttgtcgatgtaatactgctcgacttgatccggtttgatacccagcttggtcgcgtattgtggcaacagtgactggaacat                                                                                                              <  2:200484‑M2/168‑133 (MQ=255)                                                                                                                                                                                                                       aaCCGCGGGTCGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCATCGTCGACACCTTGTTTATGAAAGGACTGACCGTCTTCGCCCGACCNCAAAAAATTCCCGCAATTACCGGTATGCATGCGGGTGATTTACAGCCCGATGTGATCTTTCCCCATGATCCACTATCACAGAATGCTCTATCATTGGCGCTTAAACTGAAACGTGGATAATTTCGTTGTGAATGTTACTTGCTTGCGAAGTTATCATTTTGAAACCTAAATCAGGTAATCACg  <  1:524424/275‑1 (MQ=255)                                                                                                                                                                                                                          cgcgGGTCGTGGTCGCCATCGCGCTGGACGATcagcagcatattcagcacatcttgataatcgcagccgcgtttgagcggtactttgtcgatgtaatactgctcgacttgatccggtttgatacccagcttggtcgcgtattgtggcaacagtgactggaacatcggc                                                                                                          >  1:200487‑M2/1‑32 (MQ=255)                                                                                                                                                                                                                             gggTCGTGGTCGCCATCGCGCTGGACGATcagcag                                                                                                                                                                                                                                            <  2:138928‑M2/35‑7 (MQ=255)                                                                                                                                                                                                                             gggTCGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCATCGTCGACACCTTGTTTATGAAAGGACTGACCGTCTTCGCCCGACCGCAAAAAATTCCCGCAATTACCGGTATGCATGCGGGTGATTTACAGCCCGATGTTATCTTTCCCCAt                                                                                                                       >  1:221458/1‑152 (MQ=255)                                                                                                                                                                                                                                 cGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCa                                                                                                                                                                                                                                        <  1:138929/35‑1 (MQ=255)                                                                                                                                                                                                                                 cGTGGTCGCCAGCGCGCTGGACGATCAGCAGCGCATCGTCGACACCTTGTTTATGAAAGGACTGACCGTCTTCGCCCGACCGCAAAAAATTCCCGCAATTACCGGTATGCATGCGGGTGATTTACAGCCCGATGTGATCTTTCCCCATGagc                                                                                                                   <  2:221453/152‑3 (MQ=255)                                                                                                                                                                                                                                                    gACGATCAGCAGCGCATCGTCGACACCTTGTTTATGAAAGGACTGACCGTCTTCGCCCGACCGCAAAAAATTCCCGCAATTACCGGTATGCATGCGGGTGATTTACAGCCCg                                                                                                                                        >  2:696238/1‑112 (MQ=255)                                                                                                                                                                                                                                                        aTCAGCAGCGCATCGTCGACACCTTGTTTATGAAAGGACTGACCGTCTTCGCCCGACCGCAAAACATTCCCGCAATTACCGGTATGCATGCGGGTGATTTACAGCCCGAtgt                                                                                                                                    <  1:696247/112‑1 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                 TAGAATGCCTGATGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCCTGGTGTGCGCAACTGGCCTTAGGCGGCTGGCAAATTTCTCGTTTTAACCGTGCCTTCGACACACTATGCCAGCAAGGGCGGGTTGGCGTGGGCCGTTCCAGCGGGCGCTTTAAACCGCGGGTCGTGGTCGCCATCGCGCTGGACGATCAGCAGCGCATCGTCGACACCTTGTTTATGAAAGGACTGACCGTCTTCGCCCGACCGCAAAAAATTCCCGCAATTACCGGTATGCATGCGGGTGATTTACAGCCCGATGTGATCTTTCCCCATGATCCACTATCACAGAATGCTCTATCATTGGCGCTTAAACTGAAACGTGGATAATTTCGTTGTGAATGTTACTTGCTTGCGAAGTTATCATTTTGAAACCTAAATCAGGTAATCACG  >  CP009273/2821914‑2822402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.