New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2946067	42 (1.090)	4 (0.110)	4/300	NT	10.4%	coding (3296/3543 nt)	recB	exonuclease V (RecBCD complex), beta subunit
	?	CP009273	= 2946203	29 (0.790)					coding (3160/3543 nt)	recB	exonuclease V (RecBCD complex), beta subunit

CCAAAGTGGTGCTCATAGTCGTAATCAGCAATGCGATGGCGCAGATAACGATGCAGCGCCAGGGTATAAAGCTGATATTGCAGATCATAGCGGTGTGCCTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTGGAGGACAGCCGTGATCCACTCGGTCAATACCGGTTCCCACTGCGATTCAAAGCCGCCGAGTTCCAGTTTTTCCCGCACCCAGTTCGGGTCAACC  >  CP009273/2945956‑2946462                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                    ccAAAGTGGTGCTCATAGTCGTAATCAGCAATGCGATGGCGCAGATAACGATGCAGCGCCAGGGTATAAAGCTGATATTGCAGATCATAGCGGTGTGCCTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTTGCGGAACACCAGGTCGATAAAGACTTTTAAAAAGCCACGTACCTGCATGAACTCCAACGGGGGGCACCCttgtgataacct                                                                                                                                                                                                                                          >  2:502153/1‑264 (MQ=255)                                                 cGATGCAGCGCCAGGGTATAAAGCTGATATTGCAGATCATAGCGGTGTGCCTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAANTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGtt                                                                                                                                                                                           <  1:529874/274‑1 (MQ=255)                                                 cGATGCAGCGCCAGGGTATAAAGCTGATATTGCAGATCATAGCGGTGTGCCTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTACAGCGGCGGGCAGCCTGCGGATAGCGGGTACAACTGGCGGCTTAAAGTGTGACGCTGACTGGcagtcccgtgta                                                                                                                                                                                           >  2:503775/1‑263 (MQ=255)                                                     gCAGCGCCAGGGTATAAAGCTGATATTGCAGATCATAGCGGTGTGCCTGCATTGCCGCTGCCANAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGACCTCCAGCGGCGGGCAGCCTGCGGATCGCGAGTCAAACTTGCGGATTAACGTATc                                                                                                                                                                                                                  <  1:503782/247‑1 (MQ=255)                                                            gcaggTATAGAGCTGATATTTCAGATCATGGCGGTGTGCCTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTTGATTTATAGTCGAGCAGGTAACAACGCGCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATTCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGc                                                                                                                                                                                <  1:642136/271‑1 (MQ=255)                                                                gTATAAAGCTGATATTGCAGATCAGTGCGGTGTGCCTGCATGGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATa                                                                                                                                                                           <  1:195880/275‑1 (MQ=255)                                                                         tGATATTGCAGATCATAGCGGTGTGCCTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGACTAACGTCTCAAGCTGACTGGCGATCAGCGGTTCACTAATCGGCATNTCAAAcccact                                                                                                                                                                  >  2:72405/1‑270 (MQ=255)                                                                           atatTGCAGATCATAGCGGTGTGCCTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGTAGCCTGTTGCTAGCGGGTCAAAATGGCGGATAACCGAATGACGCTGACTGGCGATAAGACGTCCCCTAATGGGCAAATaaacatccctg                                                                                                                                                                 >  2:642127/1‑266 (MQ=255)                                                                                                tgCCTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATAAAGCTGACTGGCGATAAGCGGTTCACTAAACGGCAGAAAAAACTCAATCTCCACCTTGTTATTgcgtggcg                                                                                                                                           >  2:239760/1‑270 (MQ=255)                                                                                                          gCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGACt                                                                                                                                 <  1:239765/275‑1 (MQ=255)                                                                                                                          gTTTGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATNAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGTGGAGGGTTGACTTAGGCTTACGCCGGtt                                                                                                                 <  1:502160/275‑1 (MQ=255)                                                                                                                           ttGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCcagcggcaatgcaggcacaccgctatgatctgcaatatcagctttataccctggcgctgcatcgttatctgccccatcgccttgctgattacgactatgagcaccactttagcggcgtgatttatctgttcctgcttggcttttttaaa                                                                                                                <  2:615548‑M2/275‑150 (MQ=255)                                                                                                                           ttGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGc                                                                                                                                                                                                              >  1:153026/1‑181 (MQ=255)                                                                                                                               gtgtAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGAc                                                                                                                                                                                                          <  2:153023/181‑1 (MQ=255)                                                                                                                                             gTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCcagcggcaatgnaggcacaccgctctgatctgcaatatcagctttataccctggcgctgcatcgttatctgcgccatcgcattgctgattacgactatgagcaccactttggcggcgttatttatctgttcctgcgtggcgttgataaagaacatccgcaacag                                                                                                 >  1:615557‑M2/1‑108 (MQ=255)                                                                                                                                                   aCCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCggg                                                                                                                                                                                                                                                           >  1:642049/1‑112 (MQ=255)                                                                                                                                                       aaCCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGc                                                                                                                                                                                                                                                       <  2:642040/112‑1 (MQ=255)                                                                                                                                                        aCCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTACCATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGCTTATTGCCGGCGGAAAGTAGACTCAGGCCAACGCCGGCATCAATGAGAGGTGACTGGAGGAAAGCCGTg                                                                                   >  1:424494/1‑275 (MQ=255)                                                                                                                                                        aCCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCATTTTAACATGCAACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAAGCGGCAGATAAAACTCCATCTCAACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTGGAGGACAGCCGTg                                                                                   >  1:404931/1‑275 (MQ=255)                                                                                                                                                                   ttATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCcagcggcaatgcaggcacaccgctatgatctgcaatatcagctttataccctgg                                                                                                                                                                                                               <  1:252936‑M2/140‑55 (MQ=255)                                                                                                                                                                       aGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCcagcggcaatgcaggcacaccgctatgatctgcaatatcagctttataccctggcgct                                                                                                                                                                                                           >  2:252931‑M2/1‑82 (MQ=255)                                                                                                                                                                           gAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGTGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCCCCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTg                                                                                                           >  1:279916/1‑232 (MQ=255)                                                                                                                                                                           gAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCg                                                                                                                                                                                                                              >  1:55404/1‑117 (MQ=255)                                                                                                                                                                               aGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGAtt                                                                                                                                                                                                                          <  2:55404/117‑1 (MQ=255)                                                                                                                                                                               aGGTAACCACGCCCGTCGTGGCGGAACACCATGGCGATAAAGCCTTTTAACATGCCACGTACCGGCATGAACTCCAGCGGCTGGCAGCCTGCGGATAGTGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGagag                                                                                                       <  2:279911/232‑1 (MQ=255)                                                                                                                                                                                           ccTTCGTGGCGGAACTCCAGGACGATAACGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGc                                                                                                                                                                                               >  1:491059/1‑132 (MQ=255)                                                                                                                                                                                           ccTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCggg                                                                                                                                                                                                                                                           >  2:104333/1‑72 (MQ=255)                                                                                                                                                                                           ccTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAAt                                                                                                                                                                                    >  2:88185/1‑143 (MQ=255)                                                                                                                                                                                               cGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGc                                                                                                                                                                                                                                                       <  1:104334/72‑1 (MQ=255)                                                                                                                                                                                               cGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGc                                                                                                                                                                                <  1:88186/143‑1 (MQ=255)                                                                                                                                                                                               cGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACGCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGtt                                                                                                                                                                                           <  2:491052/132‑1 (MQ=255)                                                                                                                                                                                                                                   tGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCaaa                                                                                                                                                                                                                                    >  2:213834/1‑55 (MQ=255)                                                                                                                                                                                                                                       aCGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTgg                                                                                                                                                                                                                                <  1:213838/55‑1 (MQ=255)                                                                                                                                                                                                                                            ccTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTGGTGGACCGCCGTGATCCACTCGGTCAATACCGGATCCCACTGCGATGCAAAGCGGCCGACTCCCACTTTTTCCCGCCCCCACTTCGGGGCaaac  >  2:11269/1‑270 (MQ=255)                                                                                                                                                                                                                                                cATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCAtc                                                                                                                                                                 >  2:258107/1‑109 (MQ=255)                                                                                                                                                                                                                                                    aaCTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCa                                                                                                                                                             <  1:258112/109‑1 (MQ=255)                                                                                                                                                                                                                                                       tCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGa                                                                                                                                                                                                    >  2:154264/1‑67 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                    CCAAAGTGGTGCTCATAGTCGTAATCAGCAATGCGATGGCGCAGATAACGATGCAGCGCCAGGGTATAAAGCTGATATTGCAGATCATAGCGGTGTGCCTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTGGAGGACAGCCGTGATCCACTCGGTCAATACCGGTTCCCACTGCGATTCAAAGCCGCCGAGTTCCAGTTTTTCCCGCACCCAGTTCGGGTCAACC  >  CP009273/2945956‑2946462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.