New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3162513	28 (0.730)	8 (0.220)	7/298	NT	23.7%	coding (78/483 nt)	ygiV	transcriptional repressor for mcbR biofilm gene
	?	CP009273	= 3162709	25 (0.690)					coding (327/393 nt)	ygiW	hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein

CTTTGGTTAACAGGAGAAAGCCCCGTCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACAGCGGTGCGGCAACATCGCCACAGGTATTGATGGGAAATCGATAATGTTTACATCCAGTGTCAGGTTTGTCATTTTGCCTCCCTGCGAAATTATTCCCGGGAACGCGTCCCGGGAGCGGTAACAATTACGGATTTACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTCAACCGTATCTTTCGGCGTCACCGTCACGCCGTTCCAGCGTTTGTGGTCGATATCAACATTGATAGTACCGCTGGCATCTTTGAACACGTAGAGATCGTCAGAGATGCGTTCAACGATATTGCCGCGCAGGGTTACCCAGGTGTCGTCACGCAGGGATTTTGCGCTTTCTACAGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCG  >  CP009273/3162436‑3162928                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                            cTTTGGTTAACAGGATAAAGCCCCGTCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACAGCGGTGCGGCAACATCGCCACAGGTATTGATGGGAAATCGATAATGTTTACATCCAGTGTCAGGTTTGTCATTTTGCCTCCCTGCGAAATTATTCCCGGGAACGCGTCCCGGGAGCGGTAACAATTACGGATTTACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCa                                                                                                                                                                                                                             <  1:216107/274‑1 (MQ=255)                gaAAGCCCCGTCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACAGCGGTGCGGCAACATCGCCACAGGTATTGATGGGAAATCGATAATGTTTACATCCAGTGTCAGGTTTGTCATTTTGCCTCCCTGCGAAATTATTCCCGGGAACGCGTCCCGGGAGCGGTAACAATTACGGATTTACTTTGCGGATCTGTTTGACGTCACTTTCAACATAATTCCAGTCTTTATCGACTTAAccctgaataacaa                                                                                                                                                                                                                <  1:423553‑M2/272‑14 (MQ=255)                                   gCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACAGCGGTGCGGCAACATCGCCACAGGTATTGACGGGAAATCGATAATGTTTACATCCAGTGTCAGGTTTGTCATTCTGCCTCCCTGCGAAATTATTCCCGGGAACGCGTCCCGGGAGCGGTAACAATTACGGATTTACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTCAACCGTATCTTTCGGcgtcaccgt                                                                                                                                                                                          <  1:694091/275‑1 (MQ=255)                                                                   aGCAATTCAGGGCTACAGCGGTGCGGCAACATCGCCACAGGTATTGATGGGAAATCGATAATGTTTACATCCAGTGTCAGGTTTGTCATTTTGCCTCCCTGCGAAATTATTCCCGGGAACGCGTCCCGGGAGCGGTAACAATTACGGATTTACTTTGCGGATCTGTTGGACGTCAATTTCATCAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTCAACCGTATCTTTCGTCGTCACCGCCACGCAGCTCCGGCGTTTGGGGTCgctgnn                                                                                                                                                            >  2:308281/1‑268 (MQ=255)                                                                       aTTCAGGGCTACAGCGGTGCGGCAACATCGCCACAGGTATTGATGGGAAATCGATAATGTTTACATCCAGTGTCAGGTTTGTCATTTTGCCTCCCTGCGAAATTATTCCCGGGAACGCGTCCCGGGAGCGGTAACAATTACGGATTCCCTTTGCGGATNTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACTCTGAATCTCAACCGTATCTTTTGGCGTCACCGTCACGCCGTTCCACCGTTTGTGGTCGAAATCAACAtt                                                                                                                                                      >  1:648215/1‑275 (MQ=255)                                                                                              agcATCTCCACAGGTATTGATGGGAAAGCGATGATGTTTACATCCAGTGTAAGGTTTGTCAGTTTGCATCCGTGCGAAATTATTCGCGGGAACGAGGGCCGGGAGCGGTAACCATTACGGATTTACTTTGCGGATCGGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGAAACTCTACCGTATTTTTCGGCGTCATCGTCACGCCGTACCAGCGGTGGTGGTCGAGATCAACATTGATAGTACCGCTGGCATCTTTg                                                                                                                                <  2:653123/272‑1 (MQ=255)                                                                                                                           gATAATGTTTACATCCAGTGTCAGGTTTGTCATTTTGCCTCCCTGCGAAATTATTCCCGGGAACGCGTCCCGGGAGCGGTAACAATTACGGATTTACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGANTCTCAACCGTATCTTTCGGCGTCACCGTCACGCCGTTCCAGCGTTTGTGGTCGATATCAACATTGATAGTACCGCTGGCATCTTTGAACACGTAGAGATCGTAAGAGATGCGTTc                                                                                                   >  1:645876/1‑274 (MQ=255)                                                                                                                                         ccAGTGTCAGGTTTGTCATTTTGCCTCCCTGCGAAATTATTCCCGGGAACGCGTCCCGGGAGCGGTAACAATTACGGATTTACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCAccc                                                                                                                                                                                                                          >  1:131529‑M2/1‑138 (MQ=255)                                                                                                                                          cAGTGTCAGGTTTGTCATTTTGCCTCCCTGCGAAATTATTCCCGGGAACGCGTCCCGGGAGCGGTAACAATTACGGATTTACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTCAACCGTATCTTTCGGCGTCACCGTCACGCCGTTCCAGCGTTTGTGGTCGATATCAACATTGATAGTACCGCTGGCATCTTTGAACACGTAGAGATCGTCAGAGATGCGTTCAACGATATTGCCgcgc                                                                                   >  1:426112/1‑275 (MQ=255)                                                                                                                                           aGTGTCAGGTTTGTCATTTTGCCTCCCTGCGAAATTATTACCGGGAACGCGTCCCGGGAGCGGTAACAATTACGGATTTACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTCAACCGTATCTTTCGACGTCACCGGCACGCAGTTCCAGCGTTTGTGGTCGATATCAACATTTATAGTACCGCTGGCATCTTTGAACACGTAGAGATCGTCAGAGATACGTTCAACGATATAGCCGCGCa                                                                                  >  1:111233/1‑275 (MQ=255)                                                                                                                                            gtgtCAGGTTTGTCATTTTGCCTCCCTGCGAAATTATTCCCGGGAACACGTCCCGGGAGCGGTAACAATTACGGATTTACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTCAACCGTATCTTTCGGCGTCACCGTCACGCCGTTCCAGCGTTTGTGGTc                                                                                                                                                                  >  1:692000/1‑194 (MQ=255)                                                                                                                                                cAGGTTTGTCATTTTGCCTCCCTGCGAAATTATTCCCGGGAACGCGTCCCGGGAGCGGTAACAATTACGGATTTACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTCAACCGTATCTTTCGGCGTCACCGTCACGCCGTTCCAGCGTTTGTGGTCGata                                                                                                                                                              <  2:691991/194‑1 (MQ=255)                                                                                                                                                       gTCATTTTGCCTCCCTGCGAAATTATTCCCGGGAACGCGTCCCGGGAGCGGTAACAATTACGGATTTACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTCAACCTTATCTTTCGGCGTCACCGTCACGCCGTTCCAGCGTTTGTGGTCGATATCAACATTGATAGTACCGCTGGCATCTTTGAACACGTAGAGATCGTCAGAGATGCGt                                                                                                     >  1:614532/1‑244 (MQ=255)                                                                                                                                                           ttttGCCTCCCTGCGAAATTATTCCCGGGAACGCGTCCCGGGAGCGGTAACAATTACGGATTTACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTCAACCGTATCTTTCGGCGTCACCGTCACGCCGTTCCAGCGTTTGTGGTCGATATCAACATTGATAGTACCGCTGGCATCTTTGAACACGTAGAGATCGTCAGAGATGCGTTCaa                                                                                                 <  2:614523/244‑1 (MQ=255)                                                                                                                                                                      tGCGAAATTATTCCCGGGAACGCGTCCCGGGAGCGGTAACAATTACGGATTTACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCAccc                                                                                                                                                                                                                          >  2:17956‑M2/1‑109 (MQ=255)                                                                                                                                                                          aaaTTATTCCCGGGAACGCGTCCCGGGAGCGGTAACAATTACGGATTTACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTCAACCGTATCTTTCGGCGTCACCGTCACGCCGTTCCAGCGTTTGTGGTCGATATCAACATTGATAGTACCGCTGGCATCTTTGAACACGTAGAGATCGTCAGAGATGCGATCAACGATATTGCCGCGCAGGGTGACCCAGGTGTCGGCACGCAGGGAttg                                                   >  2:42869/1‑274 (MQ=255)                                                                                                                                                                              ttttCCCGGGAACGCGTCCCGGGAGCGGTAACAATTACGGATTTACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTCAACCGTATCTTTCGGCGTCACCGTCACGCCGTTCCAGCGTTTGTGGTCGATATCAACATTGATAGTACCGCTGGCATCTTTGAACACGTAGAGATCGTCAGAGATGCGTTCAACGATATTGCCGCGCAGGGTTACCCAGGTGTCGTCACGCAg                                                         <  1:42869/263‑1 (MQ=255)                                                                                                                                                                                 tCCCGGGATCGCGTCCCGGGTGCGGTAACAATTACGGATTTTCTTTTCTGATCTGTTTGACGGCAATTACAACAGAATTCCAGTCTTTATCGCCTTCAccctgaatggcgcaactacaccgtggcgaaatttatcatgtggcgtaaagagacggggctgtctcctgttaaccaaagccagacttttggcgtcgcctgggacgaccctgccaccaccgcaccggaagcgtttcgctttgatatctgcggcagcgttagcgaaccgattcccgat                                              >  2:692893‑M2/1‑98 (MQ=255)                                                                                                                                                                                  cccGGGAACGCGTCCCGGGAGCGGTAACAATTACGGATTTACTTTGCTGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCAccctgaattgctcaactacagcgtggcgaaatttatcatgtggagtaaagagacgcggctttctcctgttaaccaaagccagacttttggcgtcgcctaggacgaccctgccaccaccgcaccggaagcgtttcgctttgatatctgcggcagcgttagcgaaccgattcccgatca                                            <  1:692902‑M2/274‑178 (MQ=255)                                                                                                                                                                                     gggAACGCGTCCCGGGAGCGGTAACAATTACGGATTTACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTCAACCGTATCTTTCGGCGTCACCGTCACGCCGTTCCAGCGTTTGTGGTCGATTTCAACATTGATAGTACCGCTGGCATCTTTGAACACGTAGAGATCGTCAGAGATGCGTTCAACGATATTGc                                                                                        >  1:261757/1‑227 (MQ=255)                                                                                                                                                                                         aCGCGTTCCGGGAGCGGTAACAAGTACGGCTTTACTTTTCGGATCTGTGTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTCAACCGTATCTTTCGGCGTCACCGTCACGCCGTTCCAGCGTTTGTGGTCGATTTCAACATTGATAGTACCGCTGGCATCTTTTAACACGTAGAGATCGTCAGAGATGCGTTCAACGATATTGCcgcg                                                                                    <  2:261752/227‑1 (MQ=255)                                                                                                                                                                                                  gggAGCGGTAACAATTACGGATTTACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTCAACCGTATCTTTCGGCGTCACCGTCACGCCGTTCCAGCGTTTGTGGTCGATATCAACATTGATAGTACCGCTGGCATCTTTGAACACGTAGAGATCGTCAGAGATGCGTTCAACGATATTGCCGCGCAGGGTTACCCAGGTGTCGTCACGCAGGGATTTTGCGCTTTCTACAGTCGTTACGCt                           <  1:308287/275‑1 (MQ=255)                                                                                                                                                                                                           aaaagttAAGGTTTTAATTTTAGNTTCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTCAACCGTATCTTTCGGCGTCACCGTCACGCCGTTCCAGCGTTTGTGGTCGATATCAACATTGATAGTACCGCTGGCATCTTTGAACACGTAGAGATCGTCAGAGATGCGTTCAACGATATTGCCGCGCAGGGTTACCCAGGTGTCGTCACGCAGGGATTTTGCGCTTTCTACAGTCGTTACGCTGCCGTTCg                   <  2:426105/269‑1 (MQ=255)                                                                                                                                                                                                             cAATTACGGATTTACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCAccctgaattgctcaactacagcgtggcgaaatttatcatgtggcgtaaagagacggggctttctcctgttaaccaaagccagacttttggcgtcgcctgggacgaccctgccaccaccgcaccggaagcgtttcgctttgatatctgcggcagcgttagcgaaccgattcc                                                  <  2:560282‑M2/241‑172 (MQ=255)                                                                                                                                                                                                              aaTTACGGATTTACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCAccctgaattgctcaactacagcgtggcgaaatttatcatgtggcgtaaagagacggggctttctcctgttaaccaaagccagacttttggcgtcgcctgggacgaccctgccaccaccgcaccggaagcgtttcgctttgatatctgcggcagcgttagccaaccgattcccgctaatcgttatggtgttagcaatggtgaactta               <  2:322055‑M2/275‑207 (MQ=255)                                                                                                                                                                                                                 tACGGATTTACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCAccctgaattgctcaactacagcgtggcgaaatttatcatgtggcgtaaagagacggggctttctcctgttaaccaaagccagacttttggcgtcgcctgggacgaccctgccaccaccgcaccggaagcgtttcgctttgatatctgcggcagcgttagcgaaccgattcccgat                                              >  1:560291‑M2/1‑66 (MQ=255)                                                                                                                                                                                                                  aCGGATTTACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTTAACCGTATCTTTCGGCGTCACCGTCACGCCGTTCCAGCGTTTGTGGTCGATATCAACATTGATAGTACCGCTGGCATCTTTGAACACGTAGAGATCGTCAGAGATGCGTTCAACGATATTGCCGCGCAGGGTTACCCAGGTGTCGTCACGCAGGGATTTTGCGCTTTCTACAGTCGTTACGCTGCCGTTCGGccc               >  2:245158/1‑271 (MQ=255)                                                                                                                                                                                                                        ttACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTCAACCGTATCTTTCGGCGTCACCGTCACGCCGTTCCAGCGTTTGTGGTCGATATCAACATTGATAGTACCGCTGGCATCTTTGAACACGTAGAGATCGTCAGAGATGCGTTCAACGATATTGCCGCGCAGGGTTACCCAGGTGTCGTCACGCAGGGATTTTGCGCTTTCTACAGTCGTTACGCTGCCGTTCGGCCCCTGGAAtcc      >  1:385146/1‑274 (MQ=255)                                                                                                                                                                                                                           cTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCAccctgaattgctcaactacagcgtggcgaaatttatcatgtggcgtaaagagacggggctttctcctgttaaccaaagccagacttttggcgtcgcctgggacgaccctgccaccaccgcaccggaagcgtttcgctttgatatctgcggcagcgttagcgaaccgattcccgataatcgttatggtgtgagcaatggtgaacttaccggtggacgtta  >  1:322061‑M2/1‑56 (MQ=255)                                                                                                                                                                                                                              tGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTCAACCGTATCTTTCGGCGTCACCGTCACGCCg                                                                                                                                                                                   >  2:127774/1‑95 (MQ=255)                                                                                                                                                                                                                                  gATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTCAACCGTATCTTTCGGCGTCACCGTCACGCCGTTcc                                                                                                                                                                               <  1:127775/95‑1 (MQ=255)                                                                                                                                                                                                                                                  aTTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTCAACCGTATCTTTCGGCGTCACCGTCACGCCg                                                                                                                                                                                   >  1:629050/1‑75 (MQ=255)                                                                                                                                                                                                                                                      cAACAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTCAACCGTATCTTTCGGCGTCACCGTCACGCCGTTcc                                                                                                                                                                               <  2:629041/75‑1 (MQ=255)                                                                                                                                                                                                                                                                      tttATCGACTTCAccctgaattgctcaactacagcgtggcgaaatttatcatgtggcgtaaagagacggggctttc                                                                                                                                                              <  1:12194‑M2/76‑64 (MQ=255)                                                                                                                                                                                                                                                                        tATCGACTTCACCCTGAATCTCAACCGTATCTTTCGGCGTCACCGTCACGCCGTTCCAGCGTTTGTGGTCGATATCAACATTGATAGTACCGCTGGCATCTTTGAACACGTAGAGATCGTCAGAGATGCGt                                                                                                     >  1:654694/1‑131 (MQ=255)                                                                                                                                                                                                                                                                          tCGACTTCAccctgaattgctcaactacagcgtggcgaaatttatcatgtggcgtaaagagacggggctttctcct                                                                                                                                                          >  2:12194‑M2/1‑9 (MQ=255)                                                                                                                                                                                                                                                                            gACTTCACCCTGAATCTCAACCGTATCTTTCGGCGTCACCGTCACGCCGTTCCAGCGTTTGTGGTCGATATCAACATTGATAGTACCGCTGGCATCTTTGAACACGTAGAGATCGTCAGAGATGCGTTCaa                                                                                                 <  2:654685/131‑1 (MQ=255)                                                                                                                                                                                                                                                                              cTTCACCCTGAATCTCAACCGTATCTTTCGGCGTCACCGTCACGCCGTTCCAGCGTTTGTGGTCGATATCAACATTGATAGTACCGCTGGCATCTTTGAACACGTAGAGATCGTCAGAGATGCGTTCAACGATATTGCCGCGCAGGGTTACCCAGGTGTCGTCACGCAGGGAttt                                                   >  1:22463/1‑175 (MQ=255)                                                                                                                                                                                                                                                                                  aCCCTGAATCTCAACCGTATCTTTCGGCGTCACCGTCACGCCGTTCCAGCGTTTGTGGTCGATATCAACATTGATAGTACCGCTGGCATCTTTGAACACGTAGAGATCGTCAGAGATGCGTTCAACGATATTGCCGCGCAGGGTTACCCAGGTGTCGTCACGCAGGGATTTTgcg                                               <  2:22463/175‑1 (MQ=255)                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                            CTTTGGTTAACAGGAGAAAGCCCCGTCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACAGCGGTGCGGCAACATCGCCACAGGTATTGATGGGAAATCGATAATGTTTACATCCAGTGTCAGGTTTGTCATTTTGCCTCCCTGCGAAATTATTCCCGGGAACGCGTCCCGGGAGCGGTAACAATTACGGATTTACTTTGCGGATCTGTTTGACGTCAATTTCAACAGAATTCCAGTCTTTATCGACTTCACCCTGAATCTCAACCGTATCTTTCGGCGTCACCGTCACGCCGTTCCAGCGTTTGTGGTCGATATCAACATTGATAGTACCGCTGGCATCTTTGAACACGTAGAGATCGTCAGAGATGCGTTCAACGATATTGCCGCGCAGGGTTACCCAGGTGTCGTCACGCAGGGATTTTGCGCTTTCTACAGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCG  >  CP009273/3162436‑3162928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.