New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3248600 =	NA (NA)	5 (0.140)	5/294	NT	10.9%	noncoding (25/103 nt)	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	CP009273	3248653 =	41 (1.140)					noncoding (78/103 nt)	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences

TTTACAGGGAGATGATGATGAGTAAAAAATTGGCCAAAAAGCGCCAGCCGGTGAAGCCCGTGGTGGCGAAAGAACCTGCTCGCACCGCCAAAAATTTTGGCTATGAAGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGCCGGTCACGGCGGTATCATCCAGCGCCATTAACACCGCTTTCCACGCAGCCGAAGCACTGGTCGAAACCTTCATCGCGCAGCTG  >  CP009273/3248385‑3248907                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                               tttACAGGGAGATGATGATGAGTAAAAAATTGGCCAAAAAGCGCCAGCCGGTGAAGCCCGTGGTGGCGAAAGAACCTGCTCGCACCGCCAAAAATTTTGGCTATGAAGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCTGATGCTGAAACGNGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAAGCCGGACAAGaag                                                                                                                                                                                                                                                          >  1:599968/1‑273 (MQ=255)                  atgaGTAAAAAATTGGCCAAAAAGCGCCAGCCGGTGAAGCCCGTGGTGGCGAAAGAACCTGCTCGCACCGCCAAAAATTTTGGCTATGAAGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCg                                                                                                                                                                                                                                         >  1:37848/1‑275 (MQ=255)                                                         aaatagatggAGAAAGAACCTGGTCGCAACGCCAAAAATTTTGGAGATGAAGAGATGTGGAGAGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTGTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGAGGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCt                                                                                                                                                                                                   <  2:105534/267‑1 (MQ=255)                                                              ggtggCGAAAGAACCTGCTCGCACCGGCAAAAATTTTGGCTATGAAGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCGAACAACATTAACNAATTAAACNACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGc                                                                                                                                                                                                >  1:482332/1‑272 (MQ=255)                                                                                                   gtatATGAAAGGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGaa                                                                                                                                                        <  2:180870/272‑1 (MQ=255)                                                                                                   ggCTATGAAGGGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGaa                                                                                                                                                        <  1:19109/275‑1 (MQ=255)                                                                                                   ggCTATGAAGGGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGAGTAAAGACAGGTTGCCGGACGCTGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTCCTGCATCGaa                                                                                                                                                        <  1:698100/275‑1 (MQ=255)                                                                                                                  ttGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCGGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCGAACAACATTCACGAATTAAACAACCCGTATTCCGGACAAGATGCGCCAGCATCGCATCCGGACCGATCCCCACACACTGGCACTTATCTGGCCTATCACGCACTAACATCAGAAAACAGCGGACCCCTTGGCTGCATCAAAGGCCTTGCTAAccc                                                                                                                                          >  2:642760/1‑272 (MQ=255)                                                                                                                    gagcgagcTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGcaca                                                                                                                                       >  1:171939/1‑275 (MQ=255)                                                                                                                                    agcgtcgCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGa                                                                                                                        <  1:1477/272‑1 (MQ=255)                                                                                                                                    aTCGTCGCGGATGCTGATACGCGTTGAGCCGAGGATGAAGCGACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCTCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGa                                                                                                                        <  1:113031/274‑1 (MQ=255)                                                                                                                                    aTCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTCGCTAACGCACACAGGTTGGCAATCGa                                                                                                                        >  1:76625/1‑274 (MQ=255)                                                                                                                                              atgcctaacgtcgTTTAGCCGTGTATTAAGCTACCGCGTAAAGACTGGTTCCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCNAACAACATTAACGTATTACACAACCCGTAGGCCGGACAAGAGGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTGGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGTACACAGGTTGGCAATCGACTGATCAAca                                                                                                              <  1:528461/263‑1 (MQ=255)                                                                                                                                              acgacgAAAGGAGTGTAGACGAGGANCACGCTACCTCGTAAAGCCAGGTTGCCGGATGCGGCAAAAACTCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAAca                                                                                                              <  2:482325/269‑1 (MQ=255)                                                                                                                                                      aCGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATa                                                                                                                                                                                            >  1:699058/1‑188 (MQ=255)                                                                                                                                                          gTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAAtct                                                                                                                                                                                        <  2:699049/188‑1 (MQ=255)                                                                                                                                                           tttAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGAGCCGTTTGCTGCATCGAATGGATTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATTNTGCGCcacact                                                                                                >  2:67694/1‑273 (MQ=255)                                                                                                                                                            ttAGCCGAGGAAGAAGCTACCGCGTAAATACAGATTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAAGCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAAt                                                                                                <  1:3855/274‑1 (MQ=255)                                                                                                                                                            ttAGCCAAGGATGACCCTACCCCGTAAAGACAGGTTCCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTACCGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAACCCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAAt                                                                                                <  2:171936/274‑1 (MQ=255)                                                                                                                                                                    ggATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGc                                                                                                                                                                                                         >  1:60609/1‑161 (MQ=255)                                                                                                                                                                        gAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTg                                                                                                                                                                                                     <  2:60608/161‑1 (MQ=255)                                                                                                                                                                          aGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCa                                                                                                                                                                                                                                                     >  2:480110/1‑111 (MQ=255)                                                                                                                                                                              aCCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTCAACAACCAGTAGGCCGGACAAGATGCGCCAgcat                                                                                                                                                                                                                                                 <  1:480117/111‑1 (MQ=255)                                                                                                                                                                               ccGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCG‑TTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACAACATGCGCCAAAATCCCTTCATTCCCGGTCCcgc                                                                            >  2:704541/1‑273 (MQ=255)                                                                                                                                                                                   gTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAAGAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCG‑TTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTACCGGTCAcgg                                                                            <  1:704551/270‑1 (MQ=255)                                                                                                                                                                                             gTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGACAATCGACTGCTCAACAACAAGCGCCACAATCCATTCATTACCGGTCACGACGGTATCATCCaac                                                              >  1:265173/1‑273 (MQ=255)                                                                                                                                                                                                 acagctgaagcgAAAACGCCGTATCGGGCATCCAAAATCCAACAACATTAACGAATTACACCACCCGTAGGCCGGACCAGATGCGCCAGCATCGCATCCGGCACGATCCCCACAACCTGGCGTTTATCTGCACTTGCTCGCCATAATCTCGATAATCTGCCGTTCCGTTTGCTGCATCGAATGGCTTGCTAACGCCCACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGCCGGTCACGGCGGTATCATCCAgc                                                              <  2:117175/262‑1 (MQ=255)                                                                                                                                                                                                  cGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTCTGCTGCATCGAATGGCTTGCTAACGCACACAGTTTGGCAATCGACTGCTCAACATCATGCGCCACAAACCCTTCATTGCCGGCCACGACGGTATAATCCAGCGCCa                                                          >  1:267252/1‑274 (MQ=255)                                                                                                                                                                                                       gcggcgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGc                                                                                                                                          >  2:242442/1‑189 (MQ=255)                                                                                                                                                                                                           cgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGcacac                                                                                                                                      <  1:242447/189‑1 (MQ=255)                                                                                                                                                                                                                    cTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGCCGGTCACGGCGGTATCATCCAGCGCCATTAACACCGCTTTCCACGc                                       <  1:67695/275‑1 (MQ=255)                                                                                                                                                                                                                             CCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGTATCGAGTGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGCCGGTCACGGCGGTAACATCCAGCGCCATTAACACCGCTTTCAACGCAACCGAAg                               <  1:637575‑M1/274‑1 (MQ=255)                                                                                                                                                                                                                                  aaaaTCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTaa                                                                                                                                             >  2:368495/1‑159 (MQ=255)                                                                                                                                                                                                                                      tCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGca                                                                                                                                         <  1:368501/159‑1 (MQ=255)                                                                                                                                                                                                                                       ccAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCaa                                                                                                                            >  2:600095/1‑171 (MQ=255)                                                                                                                                                                                                                                           caacaTTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGa                                                                                                                        <  1:600104/171‑1 (MQ=255)                                                                                                                                                                                                                                           aattcgttaatgttgttggattttgtaggccggaCAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTTGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATACTCTGCCGATCCGCTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGCCGATCACGGCGGTATCATCCAGCGCCATTAACACCGCTTTCCAAGCAGCCGAATCCATGCTCGACAcc                 >  1:151567‑M2/35‑274 (MQ=255)                                                                                                                                                                                                                                            attcgttaatgttgttggattttgtaggccggaCAAGATGCGCCAGCATCGCATCCgg                                                                                                                                                                                                                                        >  2:247506‑M2/34‑58 (MQ=255)                                                                                                                                                                                                                                              tcgttaatgttgttggattttgtaggccggaCAAGATGCGCCAGCATCGCATCCGGc                                                                                                                                                                                                                                       >  1:90104‑M2/32‑57 (MQ=255)                                                                                                                                                                                                                                                ttAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGCCGGTAACGGCGGTatcatc                                                                  >  2:441866/1‑220 (MQ=255)                                                                                                                                                                                                                                                gttaatgttgttggattttgtaggccggaCAAGATGCGCCAGCATCGCATCCGGCACg                                                                                                                                                                                                                                    <  1:247511‑M2/29‑1 (MQ=255)                                                                                                                                                                                                                                                  taatgttgttggattttgtaggccggaCAAGATGCGCCAGCATCGCATCCGGCACGa                                                                                                                                                                                                                                   <  2:90103‑M2/30‑1 (MQ=255)                                                                                                                                                                                                                                                    cGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGCCGGTCACGGCGGTATCATCCAgc                                                              <  1:441873/220‑1 (MQ=255)                                                                                                                                                                                                                                                    cGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTGATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGCCGGTCACGGCGGTATCATCCAGCGcc                                                           <  1:582451/223‑1 (MQ=255)                                                                                                                                                                                                                                                        ttAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGc                                                                                                                                                                                                                                       >  2:19469/1‑47 (MQ=255)                                                                                                                                                                                                                                                        ttAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAACACCTGGCGTTTATCTGGCCTTGCTCGCCATCATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGCCGGTCACGGCGGTATCATCCAGCGCCATAAACACCGCTCTACACGCAGCCGAAGCCCGGGCAGAAACCGTCATCgcgcccc    >  2:166890/1‑271 (MQ=255)                                                                                                                                                                                                                                                         tAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCCTCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGACTGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGCCGGTCACGGCGGTATCATCCAGCGCCATTAACACCGCTTTCCACGCAGCCAAAACACTGGCCGAAACCTTCATGTCGCAGCTg  >  1:212385/1‑275 (MQ=255)                                                                                                                                                                                                                                                            acaacCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGa                                                                                                                                                                                                                                   <  1:19469/47‑1 (MQ=255)                                                                                                                                                                                                                                                                cccGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAAcat                                                                                                             >  1:182688/1‑161 (MQ=255)                                                                                                                                                                                                                                                                    taggccggaCAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATg                                                                                                         <  2:182685‑M2/152‑1 (MQ=255)                                                                                                                                                                                                                                                                     aggccggaCAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATa                                                                                                                                                                                            >  1:436789‑M2/9‑77 (MQ=255)                                                                                                                                                                                                                                                                     aggccggaCAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCCCACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGc                                                                                     >  2:487681‑M2/9‑180 (MQ=255)                                                                                                                                                                                                                                                                         cggaCAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAAtct                                                                                                                                                                                        <  2:436782‑M2/73‑1 (MQ=255)                                                                                                                                                                                                                                                                         cggaCAAGATGCGCCAGCATCGCAGCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACTGCATGAGCCACAATCCCTTCATTGCCGGt                                                                                 <  1:487688‑M2/176‑1 (MQ=255)                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                               TTTACAGGGAGATGATGATGAGTAAAAAATTGGCCAAAAAGCGCCAGCCGGTGAAGCCCGTGGTGGCGAAAGAACCTGCTCGCACCGCCAAAAATTTTGGCTATGAAGAGATGTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGCCGGTCACGGCGGTATCATCCAGCGCCATTAACACCGCTTTCCACGCAGCCGAAGCACTGGTCGAAACCTTCATCGCGCAGCTG  >  CP009273/3248385‑3248907

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.