New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3472275 =	36 (0.940)	4 (0.110)	4/296	NT	11.6%	coding (1692/1806 nt)	kefB	potassium:proton antiporter
	?	CP009273	3472365 =	27 (0.750)					coding (1602/1806 nt)	kefB	potassium:proton antiporter

CCGGGCATTTTGCGCCCGCAATAAAACGTTTTCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGTTGGCATATTTCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGACGATAGACTCAGCGGCCTCTGCACCCGCAGAACGTA  >  CP009273/3472109‑3472597                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                         ccGGACATTTGGCGCCCGCAATAAACCGTTTTCGGATTGCCATCTTTACCCTCTACTCACATTCCTCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTg                                                                                                                                                                                                                        <  2:250940/275‑1 (MQ=255)  ctggCATTTTGCGCCCGCAATAAAACGTTTTCGGATTTCCATCTTTACCCTCTACTCAAATTCCTCCCAGCCGTCCAGCTGGCGTCGTTCTNGTTGCATTTCACGCTGGAACATCTCTTCCAGTTCGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGCTGCATGCCAAGCGTGACCAGCGTCTTgc                                                                                                                                                                                                                       <  1:540756/273‑1 (MQ=255)              gcCCGCAATAAAACGTTTTCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCANGCTGGAAAATCTCTTCCAGTTCGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGTCCAGCGTCTTGCGCCCCAGCTCTa                                                                                                                                                                                                           <  1:495691/275‑1 (MQ=255)                    aaTAAAACGTTTTCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCGTGTTCGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCa                                                                                                                                                                                                      <  1:450633/274‑1 (MQ=255)                                tcgcttttccATCTTTATCCTCTTCTCTAATTCATCCCCGCCGTTCAGCTGGCTTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGATATCTGCATGCATTGTGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGTCGGAGGCGGATGCATGTGAAGAGTGACCAGCGTCTTACGCCCCAGCCCTAACGGACTGGAGAATGtat                                                                                                                                                                                         <  2:164279/267‑3 (MQ=255)                                                         tCATATTCTTCCCATCCGGCCAGCTGGAGTCGTTCTTGTTGCAGTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGGGCTTCCCTGGCGCGAGAAAGTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCcctgc                                                                                                                                                                <  1:347149/275‑1 (MQ=255)                                                          cAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAg                                                                                                                                                                                                                <  1:336319/226‑1 (MQ=255)                                                                   cccAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGGGCTTCCCTGGCGCGAGACATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATACGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTTCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCCCTAACGCACTGGAGAATGTTTCACGGGAAAAATGCATCACCCCTGCCTGtaataa                                                                                                                                                       >  1:23376/1‑274 (MQ=255)                                                                         cGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGTAAAATCTCTGCCAGTTCGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTNTCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATgc                                                                                                                                                <  1:551894/275‑1 (MQ=255)                                                                                     gtcgtTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCGCAGc                                                                                                                                                                                                               >  1:670619/1‑200 (MQ=255)                                                                                             tgttgCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCgcgcgc                                                                                                                            <  1:274510/275‑1 (MQ=255)                                                                                                                              tCGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAGTGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATAGGCAAATGCGGAAAGTGCTg                                                                                           <  1:585212/275‑1 (MQ=255)                                                                                                                                   tCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCNGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCTGCGCGCTCGCGCAAGTATATGCAAATGCGGAAAGTGCTGTTGGc                                                                                      <  1:517883/275‑1 (MQ=255)                                                                                                                                                     agaAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTa                                                                                                                                                                                                           >  2:525603/1‑140 (MQ=255)                                                                                                                                                         aTTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTATAACGc                                                                                                                                                                                                       <  1:525610/140‑1 (MQ=255)                                                                                                                                                                cGGTATCGGCCTGCATTGGGATCAGATCTCGCACCATTCGCATATACAGGCGGCGAAAATGCAGTTGCGCTAGCTGTGCCTGATGAGGATGAATCCCAAGCGAGACCAGCGTCTTGCGCCCCAGCTCTGACGCAGAGGACAATGTTGCCCGGGAAAACTACACACCCCCTGCCCGTAAGAACTCATGAGCTGCGACACGTCCGCGCGCTCCCGCAAAAATAAACAAACACGGAAAGAGCTGGTGGCCAAATTCCACCCGCNTCATGGTGTCTTcc                                                         >  2:528648/1‑275 (MQ=255)                                                                                                                                                                           tccgTTGGGATCAGCATGCGCAGCATCCGCATTTCCAGGCTGCGAAAATGCCGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCCAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGTTGGCATATTTCCACCAGCTTCATGGTGTCTTCCGGCTCGTTa                                                >  2:330872‑M1/5‑273 (MQ=255)                                                                                                                                                                             CATTGGGATGAGCTCTCGCAGCATCCTCATATCCCGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCAccc                                                                                                                                                                    <  1:468585‑M1/155‑1 (MQ=255)                                                                                                                                                                             CATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGTTGGCATATTTCCACCAACTTCATGGTGTCTTCCGGCtcgtttaa                                              <  1:330878‑M1/273‑4 (MQ=255)                                                                                                                                                                                 gggATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCcctgc                                                                                                                                                                <  2:468578/155‑1 (MQ=255)                                                                                                                                                                                 gggATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTCTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGTTGGc                                                                                      <  1:436874/229‑1 (MQ=255)                                                                                                                                                                                   gATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGTTGGCATATTTCCACCAGCTTCATGGCGTCTTCCGGCTCGTTCCAGGTTAtta                                      >  2:173268/1‑273 (MQ=255)                                                                                                                                                                                       aggcacagcgagcgcaactgcattttcgccgcctggatatgcggatgctgcgagagctcatcccaatgcatgccAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGc                                                                                                            >  2:169373‑M2/75‑201 (MQ=255)                                                                                                                                                                                           acagcgagcgcaactgcattttcgccgcctggatatgcggatgctgcgagagctcatcccaatgcatgccAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAAt                                                                                                        <  1:169376‑M2/131‑1 (MQ=255)                                                                                                                                                                                            tcGCAGCATCCGCATATCCAGGCGGCCAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTTCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACTCCCGCGCGCTCGNGCAAGAATNTGCACATGCGGAAAGTGCTGTTGGCATATTACCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGACGATaaaa                              >  1:471651/1‑271 (MQ=255)                                                                                                                                                                                            cagcgagcgcaactgcattttcgccgcctggatatgcggatgctgcgagagctcatcccaatgcatgccAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAAc                                                                                                                                                                              >  1:561605‑M2/70‑130 (MQ=255)                                                                                                                                                                                             gcatgcaTCCGCATATCCAGGCGGCGAAAATGCAGTTGAGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAAc                                                                                                                                                                              >  2:86680/5‑129 (MQ=255)                                                                                                                                                                                                gagcgcaactgcattttcgccgcctggatatgcggatgctgcgagagctcatcccaatgcatgccAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCg                                                                                                                                                                          <  2:561596‑M2/65‑1 (MQ=255)                                                                                                                                                                                                 gcaTCCGCATATCCAGGCGGCGAAAATGCAGTTGAGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCg                                                                                                                                                                          <  1:86681/129‑1 (MQ=255)                                                                                                                                                                                                                ggcggcGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTgcg                                                                                                                                                                                                                      >  2:79271/1‑70 (MQ=255)                                                                                                                                                                                                                  cggcgAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTgc                                                                                                                                                                                                                       >  2:64792/1‑67 (MQ=255)                                                                                                                                                                                                                    gcgAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGcccc                                                                                                                                                                                                                  <  1:79272/70‑1 (MQ=255)                                                                                                                                                                                                                      gAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGccc                                                                                                                                                                                                                   <  1:64793/67‑1 (MQ=255)                                                                                                                                                                                                                       aaaaTGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCAAAGCGTGACCAGCGTCTTGCGCCCCAGCTCGAACGCACTGGAGAATGTTNCACGGGAAAACTGCGTCCCGCCGGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGTTGGCATATTTCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGACGATAGACTCAGCGGCCTCTGCACCCGCAGAACGTa  <  1:557787/275‑1 (MQ=255)                                                                                                                                                                                                                                                      ggATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGTTGGCATATTTCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGACGATAGACTCAGCGGCCTCTGCa               >  2:128485/1‑231 (MQ=255)                                                                                                                                                                                                                                                       gATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTc                                                                                                                          >  2:525038/1‑123 (MQ=255)                                                                                                                                                                                                                                                          gcatgccAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGTTGGCATATTTCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGACGATAGACTCAGCGGCCTCTGCACCCg           <  1:128486‑M2/224‑1 (MQ=255)                                                                                                                                                                                                                                                           catgccAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCgcgc                                                                                                                      <  1:525045‑M2/117‑1 (MQ=255)                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                         CCGGGCATTTTGCGCCCGCAATAAAACGTTTTCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGTTGGCATATTTCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGACGATAGACTCAGCGGCCTCTGCACCCGCAGAACGTA  >  CP009273/3472109‑3472597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.