New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3613426 =	NA (NA)	7 (0.200)	7/286	NT	100%	coding (875/4236 nt)	rhsB	Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor
	?	CP009273	3613850 =	0 (0.000)					coding (1299/4236 nt)	rhsB	Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor

CCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCCGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGATAATCCACACA  >  CP009273/3613577‑3614094                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                     catactgatacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcaga                                                                                                                                                                                                                                                      <  1:248459‑M2/1‑1 (MQ=255)    actgatacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacag                                                                                                                                                                                                                                                   >  1:105893‑M2/271‑274 (MQ=255)        atacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagACAGACgg                                                                                                                                                                                                                                               >  1:17299‑M2/267‑274 (MQ=255)        atacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcccggccggtaaattctccgggtattccgggtcgtgcgtcaaccaaacggcaaacagacag                                                                                                                                                                                                                                               >  1:675883‑M2/267‑272 (MQ=255)        atacgcgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgcgactacggtcatacaccaccgccagttcgccgcgtggcgtccacccatagcgcaccagcggcgcggcaggtaaatcctccgggtatcccgggtcgtgcgccagccacacggcagACAGACgg                                                                                                                                                                                                                                               >  1:622362‑M2/267‑274 (MQ=255)                                 tgcagctgtgttgtcccccgcccggagctggcggaacggtacccggtttccggccggcccgggtgacggtgcgccaccacccggccccggtatttatgctcgtaaggaaagctgcgcacctgtttgccacgacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagACAGACGGATGCCGCAGGCAGGACAACAGAGTa                                                                                                                                                                                                                      <  2:633603‑M2/33‑1 (MQ=255)                                    gggtggtctggcccccgcccagcgctgtcggaccggtaacggatttgcggccagccagtgtgacggtgcaccagcatccggccccggtatttatcaccgtaagtcaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagACAGACGGATGCCGCAGGCAGGACAACAGAGTACAg                                                                                                                                                                                                                   <  2:212085‑M2/36‑1 (MQ=255)                                                  ccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagaca                                                                                                                                                                                                                                                    <  1:328701‑M2/3‑1 (MQ=255)                                                                  taacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagACAGACGGAt                                                                                                                                                                                                                                             >  1:334666‑M2/209‑218 (MQ=255)                                                                      ggtaacggatttccggccggcccgtgtgacggtgcgccaccatccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcacctcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacccggcagACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGCGCCTCATAACGCGCATa                                                                                                                                                                                 >  1:569948‑M2/205‑274 (MQ=255)                                                                                ttccggccggcccgtgtgacggtgcgccaccatccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttcccactacggtcatacaccaccgccagttcgccgcgtggcggccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGa                                                                                                                                                                      <  1:128535‑M2/81‑1 (MQ=255)                                                                                                                     ccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcaga                                                                                                                                                                                                                                                      >  1:228098‑M2/158‑158 (MQ=255)                                                                                                                     acccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgacgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcaga                                                                                                                                                                                                                                                      <  2:228093‑M2/1‑1 (MQ=255)                                                                                                                        cggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagACAGACGGATGCCgcaggc                                                                                                                                                                                                                                    >  1:70765‑M2/155‑173 (MQ=255)                                                                                                                            atttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagACAGACGGATGCCGCAGGCAGGa                                                                                                                                                                                                                                <  2:70764‑M2/23‑1 (MQ=255)                                                                                                                                     cgtaagtaaagctgcgcacctgtttggcactacgctcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGANGTGGTGACNGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCa                                                                                                                 >  1:470635‑M2/142‑275 (MQ=255)                                                                                                                                     cgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagACAGACGGa                                                                                                                                                                                                                                              >  2:293719‑M2/142‑150 (MQ=255)                                                                                                                                         agtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagACAGACGGATGcc                                                                                                                                                                                                                                          <  1:293725‑M2/13‑1 (MQ=255)                                                                                                                                                                     cggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagac                                                                                                                                                                                                                                                 >  2:553914‑M2/110‑115 (MQ=255)                                                                                                                                                                         catacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagACAGACGGAt                                                                                                                                                                                                                                             <  1:553923‑M2/10‑1 (MQ=255)                                                                                                                                                                                                                                                     ttgcgggtcgtgcgtcagccacacggcagACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCNCGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGGCCCTGACGGCGATATCACCCGCTACCGTTATGATAATCcacaca  <  1:521220‑M2/245‑1 (MQ=255)                                                                                                                                                                                                                                                                                  ACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCAt                                                                                                                                                           <  2:292272‑M2/92‑1 (MQ=255)                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                     CCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCCGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGATAATCCACACA  >  CP009273/3613577‑3614094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.