New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3614119 =	NA (NA)	12 (0.330)	6/298	NT	24.0%	coding (1568/4236 nt)	rhsB	Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor
	?	CP009273	3614516 =	40 (1.040)					coding (1965/4236 nt)	rhsB	Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor

CGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGTCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAAGGGTGAAACCGCAGAGCGGTGGCAGTATGACGAACGTGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTA  >  CP009273/3614244‑3614782                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                           cgtttctgctgccgtccggggcaatgatggcggtcaggtcaccggcgatgttgtattcataccgcgtttcatggccctgcgtgtctttcacggcaattaactgtccacggctgtcgtatgcgcggtactgactcagcccttcctcgcggtgcaccgccgtcatctgcccgaagcggtcatggtcataacgggttacataaccggaacagtcggtgaagctcagcaactgaccgtaacggctccacgtcatggttttcgggcggccggtggcatCt                                                                                                                                                                                                                                                                           >  1:415912‑M2/274‑275 (MQ=255)     tctgctgccgttcggggcaatgacggcggtcaggtcaccggcgatgttgtattcataccgcgtttcatggccctgcgtgtctttcacggcaattaactgtccacggctgtcgtatgcgcggtactgactcagcccttcctcgcggtgcaccgccgtcatctgcccgaagcggtcatggtcataacgggttacataaccggaacagtcggtgaagctcagcaactgaccgtaacggctccacgtcatggttttccggctgccggtggcatCTTCCg                                                                                                                                                                                                                                                                       <  1:683686‑M2/6‑1 (MQ=255)                aGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATGGCCCCGGACGGCAGCAGAAACGGGACACAGGACGCTGCGTGGGGAAAGGCCGTCCGGACCACGCA‑GGGCGGGCTGACGCGCAGTCTGGAAGACGGTGCTGCGGGACGGGGGATGCGGCGGACCCCAGAAACAGGCCGCCACCCCACCCTCCGTTGCGCTGtggt                                                                                                                                                                                                                                                           >  2:24836/1‑272 (MQ=11)                    aGTACGCCGGATACGACAGCCGTGGAAAGTTAATTGCCTTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACANCGCCGGTGNCCTGACCGCCGTCATTGCCCCGGACGGCATCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCATACCACCTTCCGTTACGATGTACTTGa                                                                                                                                                                                                                                                        <  1:476215/274‑1 (MQ=9)                     gTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑CGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCCGCCACACCAACTTCCGTTACGATGTACTTGAcc                                                                                                                                                                                                                                                      >  1:217204/1‑275 (MQ=14)                                                 ttAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCCTCCGCCTGACCCGGGAAAACGGCAGACACAACACCTTCCGGTACGACGGACCTGAACGGCAGGTCCAGGAAACCGGCcttacccg                                                                                                                                                                                                                          >  2:599560/1‑270 (MQ=11)                                                 ttAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCTTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCCTTGACgg                                                                                                                                                                                                                          >  1:687846/1‑275 (MQ=14)                                                         cGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGcccaaccc                                                                                                                                                                                                                  >  1:33636/1‑269 (MQ=14)                                                           tGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCNCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGcaacac                                                                                                                                                                                                                 >  1:552894/1‑270 (MQ=14)                                                                                aaccgcgGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGAc                                                                                                                                                                                            <  1:62957/271‑1 (MQ=14)                                                                                   cgcgGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCAGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCt                                                                                                                                                                                                                                                                           >  1:266757/1‑192 (MQ=14)                                                                                                aaacaTCCCCGGGGACCTGCCCGCCGGCCTTGCCCCGGCCGGCAGCAGAAACGGGACACAGTACGATGCGAGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGCCGCTCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCa                                                                                                                                                                           <  2:687837/274‑1 (MQ=11)                                                                                                  acaTCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAACACGGCAGCCACACCACCTTCCGTTACGATGTACTTGAc                                                                                                                                                                                                                                                       >  2:352435/1‑197 (MQ=14)                                                                                                    aTCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTCGACGGCCGCACACAGCGTGATCACCACGACCGGACCGGCAAAccacaccgcccaca                                                                                                                                                                       >  2:86375/1‑262 (MQ=9)                                                                                                      cGCCGGTGACCTGACTGCCGTCAGTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGANGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCCACGAg                                                                                                                                                                      >  1:497844/1‑274 (MQ=14)                                                                                                      cGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGc                                                                                                                                                                                                                                                   <  1:352441/197‑1 (MQ=31)                                                                                                        tccacggctgtcgtatgcgcggtactgactcagcccttcctcgcggtgcaccgccgtcatctgcccgaagcggtcatggtcataacgggttacataaccggaacagtcggtgaagctcagcaactgaccgtaacggctccacgtcatggttttccggctgccggtggcatCTTCCGt                                                                                                                                                                                                                                                                      >  1:185854‑M2/171‑177 (MQ=255)                                                                                                        gcGGGGACCTGGACGCCGTCATTGCCCCGGACGGCAGCGGAAAGGGGACACAGTACGATGCGTGGGAAAAAGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCGGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTGCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACGGCGTTCTCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGAt                                                                                                                                                                   <  2:676321/274‑1 (MQ=11)                                                                                                        ccGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATTCGTGGGGAAAGGCCGTCCGTACCACCCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCCGCCACACCACCTTCCGGTACGATGTACTTTACCGGCTGATACAGGAAAGCGGCATAGAAGGCCGCACACAGCGTTACCAACACACACTGACCGGCAAACGTAACCGCAGGGaata                                                                                                                                                                    >  2:597922/1‑271 (MQ=11)                                                                                                                           aaatgaaaacgACGGCAGCCGAAACCGGAGACATTACGACGCGTTGGGCAAGGCCG‑CCTTTCACCCCACTGGCGCGCCGACGCGCAGTTAGGAATACTATCATGCCGCACGGGTCACCTGCCTGACCAGTGAAAACGGCAGCCACACCAGCCTCCGTTACGATGTACTCGACCGGCTGCTACAGGAGACCGGCTTTGGCGTCCGTAAACAGCGTTATCACCACGGCCTGACCGGCAAACGTATCCGCATCGAGGATGAGGGTCTGGCCAccccc                                                                                                                                                 <  2:589312/264‑3 (MQ=2)                                                                                                                            aTTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGcaca                                                                                                                                                                                                                   <  1:371995/207‑1 (MQ=31)                                                                                                                                  ccGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGAACTGACCGGCAAACTTATCCGCAGCGAGGAAGAGGGTCTGGACACCCACTGGCACTa                                                                                                                                         >  1:253800/1‑275 (MQ=14)                                                                                                                                     gACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAgg                                                                                                                                                                                                                                          >  1:455841/1‑175 (MQ=31)                                                                                                                                        gcccttcctcgcggtgcaccgccgtcatctgcccgaagcggtcatggtcataacgggttacataaccggaacagtcggtgaagctcagcaactgaccgtaacggctccacgtcatggttttccggctgccggtggcatCTTCCGTTACGATGTACTTGACCGGCTGATACGGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGTCTGGTCACCCACTGGCACTATGAc                                                                                                                                     >  1:456162‑M2/139‑274 (MQ=255)                                                                                                                                         gcagcaGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAAc                                                                                                                                                                                                                                      <  2:455834/175‑1 (MQ=31)                                                                                                                                                       acacAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGTCTGGTCACCCACTGGCACTATGACGAAGCAGACCGcccaac                                                                                                                    >  1:303709/1‑271 (MQ=14)                                                                                                                                                       acacAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGACTGGTCACCCCCTGGCACTATGACGAAGCAGACcccccccc                                                                                                                    >  1:60274/1‑271 (MQ=14)                                                                                                                                                        cccaGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGTCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCAc                                                                                                                    <  1:86376/272‑1 (MQ=14)                                                                                                                                                                tcatctgcccgaagcgttcatggtcataacgggttacataaccggaacagtcggtgaagctcagcaactgaccgtaacggctccacgtcatggttttccggctgccggtggcatCTTCCGTTACGATGTACTTGGCCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCgg                                                                                                                                                                                         <  2:369417‑M2/84‑1 (MQ=255)                                                                                                                                                                tcatctgcccgaagcggtcatggtcataacgggttacataaccggaacagtcggtgaagctcagcaactgaccgtaacggctccacgtcatggttttccggctgccggtggcatCTTCCGt                                                                                                                                                                                                                                                                      >  2:719813‑M2/115‑121 (MQ=255)                                                                                                                                                                tcatctgcccgaagcggtcatggtcataacgggttacataaccggaacagtcggtgaagctcagcaactgaccgtaacggctccacgtcatggttttccggctgccggtggcatCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGa                                                                                                                                                                                             >  1:193959‑M2/115‑194 (MQ=255)                                                                                                                                                                tcatctgcccgaagcggtcatggtcataacgggttacataaccggaacagtcggtgaagctcagcaactgaccgtaacggctccacgtcatggttttccggctgccggtggcatCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCgg                                                                                                                                                                                         >  1:369423‑M2/115‑198 (MQ=255)                                                                                                                                                                gATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAg                                                                                                                                                                      >  1:667219/1‑216 (MQ=31)                                                                                                                                                                 aTGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACaccacc                                                                                                                                                                                                                                                                            <  1:553566/113‑1 (MQ=32)                                                                                                                                                                    ctgcccgaagcggtcatggtcataacgggttacataaccggaacagtcggtgaagctcagcaactgaccgtaacggctccacgtcatggttttccggctgccggtggcatCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCgg                                                                                                                                                                                         <  2:193956‑M2/84‑1 (MQ=255)                                                                                                                                                                    cGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATg                                                                                                                                                                  <  2:667210/216‑1 (MQ=31)                                                                                                                                                                     gTGGGGAAAGCCCGCCCGTCCCCCGCA‑GGGCGGGCCGTCGCGCAGTATGGACTACGATGCTGCCGGCCGGGTCATCCGCCTGACCAGTGAAACCGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGTCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTg                                                                                                       <  2:303703/274‑1 (MQ=255)                                                                                                                                                                       ggggAAAGGCCGTCCGTACCACGCT‑GGGCCGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCNGACCGGCAAACTTATCCGCAGCGAGGATGAGGGTCTGGTCa                                                                                                                                                      >  1:495792/1‑225 (MQ=14)                                                                                                                                                                       ggggAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGTCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCCCACGCACCGCACCGCGAAg                                                                                                    >  1:122101/1‑275 (MQ=14)                                                                                                                                                                       ggggAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATCCACTTGACCGGCTGATACAGGAAACCGGATTTGACGGGCg                                                                                                                                                                                                                       >  2:574270/1‑160 (MQ=9)                                                                                                                                                                       ggggAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGGATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTACGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCTCACACAGCGTTATCACCACGACCNGACCGGCAAACTTATCCGCAGCGAGGATAAGGGTCTGGTCACCCACTGGCACTATGACGAAGCAGAACACCTCACgcaccgcacccacac                                                                                                     >  1:564661/1‑269 (MQ=9)                                                                                                                                                                           aaaGGCCGTCAGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAAGCGGCTTTGACGGCCGcaca                                                                                                                                                                                                                   <  1:574279/160‑1 (MQ=14)                                                                                                                                                                            aaGGCCGGCCGTGCCCCGCA‑GGTCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGTACGGGTCATCCGCCTGACCATTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGANCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCCCGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGTCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGAACCGCACCGTGAAGGGTGa                                                                                               <  1:597931/275‑1 (MQ=255)                                                                                                                                                                             aGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCAGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGTCTGGTCACCCACTGGCAc                                                                                                                                           <  1:366264/230‑1 (MQ=14)                                                                                                                                                                              ggCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGa                                                                                                                                                                                                                             >  1:211806/1‑147 (MQ=32)                                                                                                                                                                                ccgtccgtACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACAACACCtt                                                                                                                                                                                                                                                                          <  1:520117/100‑1 (MQ=18)                                                                                                                                                                                  gtccgtACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGc                                                                                                                                                                                                                         <  2:211802/147‑1 (MQ=32)                                                                                                                                                                                   tccgtACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGTCTGGTCACCCACTGGCACCATGACGAAGCAGACCGACCCACGCCCCGCCCCGCGAAGGGTggacacgca                                                                                        >  2:715466/1‑267 (MQ=255)                                                                                                                                                                                     ggtcataacgggttacataaccggaacagtcggtgaagctcagcaactgaccgtaacggctccacgtcatggttttccggctgccggtggcatc                                                                                                                                                                                                                                                                            <  1:54024‑M2/1‑1 (MQ=255)                                                                                                                                                                                            cGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAgg                                                                                                                                                                                                                                          >  1:477136/1‑120 (MQ=32)                                                                                                                                                                                            acccacatcgggaTGCCGCGAAGTATGGAATACGATGCCGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGTCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAAGGGTGAAACCGCAGAGCGGTg                                                                                <  2:122100/267‑1 (MQ=2)                                                                                                                                                                                                gttacataaccggaacagtcggtgaagctcagcaactgaccgtaacggctccacgtcatggttttccggctgtctgtggcatCt                                                                                                                                                                                                                                                                           >  2:543223‑M2/83‑84 (MQ=255)                                                                                                                                                                                                gttacataaccggaacagtcggtgaagctcagcaactgaccgtaacggctccacgtcatggttttccggctgccggtggcatCTTCCGt                                                                                                                                                                                                                                                                      >  1:18500‑M2/83‑89 (MQ=255)                                                                                                                                                                                                 gggcgggcTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAAc                                                                                                                                                                                                                                      <  2:477129/120‑1 (MQ=32)                                                                                                                                                                                                    cataaccggaacagtcggtgaagctcagcaactgaccgtaacggctccacgtcatgattttccggctgccggtggcatCTTCCg                                                                                                                                                                                                                                                                       <  1:543232‑M2/6‑1 (MQ=255)                                                                                                                                                                                                       gcTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGa                                                                                                                                                                                             >  2:92770/1‑155 (MQ=31)                                                                                                                                                                                                                    ggtgaagctcagcaactgaccgtaacggctccacgtcatggttttccggctgccggtggcatCTTCCGt                                                                                                                                                                                                                                                                      >  2:191643‑M2/63‑69 (MQ=255)                                                                                                                                                                                                                            tcagcaactgaccgtaacggctccacgtcatggttttccggctgccggtggcatCTTCCGt                                                                                                                                                                                                                                                                      >  1:50422‑M2/55‑61 (MQ=255)                                                                                                                                                                                                                                                  ccacgtcatggttttccggctgccggtggcatCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGc                                                                                                                                                                                                                      >  2:22846‑M2/33‑87 (MQ=255)                                                                                                                                                                                                                                                  ccacgtcatggttttccggctgccggtggcatCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGa                                                                                                                                                                                             >  2:261171‑M2/33‑112 (MQ=255)                                                                                                                                                                                                                                                  ccacgtcatggttttccggctgccggtggcatCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGa                                                                                                                                                                                             >  1:23592‑M2/33‑112 (MQ=255)                                                                                                                                                                                                                                                      gtcatggttttccggctgccggtggcatCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGcacac                                                                                                                                                                                                                  <  1:22846‑M2/59‑1 (MQ=255)                                                                                                                                                                                                                                                      gtcatggttttccggctgccggtggcatCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCgg                                                                                                                                                                                         <  2:23592‑M2/84‑1 (MQ=255)                                                                                                                                                                                                                                                      gtcatggttttccggctgccggtggcatCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCgg                                                                                                                                                                                         <  1:261176‑M2/84‑1 (MQ=255)                                                                                                                                                                                                                                                                           gtggcgtCGTCCGTTGCGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGTCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAAGGGTGAAACCGCAGAGCGGTGGCAGTATGACGAACGTGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTa  <  1:150768‑M2/267‑1 (MQ=255)                                                                                                                                                                                                                                                                                  CTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGcc                                                                                                                                                                                                                        >  2:36059‑M2/1‑53 (MQ=255)                                                                                                                                                                                                                                                                                  CTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGca                                                                                                                                                                                                                     >  1:183993‑M2/1‑56 (MQ=255)                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                           CGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCA‑GGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGTCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAAGGGTGAAACCGCAGAGCGGTGGCAGTATGACGAACGTGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTA  >  CP009273/3614244‑3614782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.