New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3714984	70 (1.820)	7 (0.190)	4/298	NT	11.0%	coding (427/852 nt)	insK	IS150 transposase B
	?	CP009273	= 3715491	47 (1.290)					intergenic (+26/+197)	sokA/glyS	pseudogene, sRNA antisense regulator blocking mokA/hokA translation/glycine tRNA synthetase, beta subunit

GGAGTGTTTCTTTGGAACCTTAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAGTTTGTTTCTTCTCCTTGATATAATCCTAAAAAAATCTCATAAAATTAATATATGAGATAATCTTTATTCAGCAGAAGATTATTAAAGGTTGCTGTATTATTTAGCGATAAAAAAAGCCTGCCAGATGGCAGGCTATTTAATAACGGCGTTATTATTGCAACAGCGAAATATCCGCAACGCGCAGGAACAGTTCGCGCAGTTTCTCCAGCATGGTCAGACGGTTGAT  >  CP009273/3715226‑3715762                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                ggAGTGTTTCTTTGGAACCTTAAAGTCGGAGTTTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTgagacaaa                                                                                                                                                                                                                                                                         >  1:571213‑M2/1‑266 (MQ=255)                   cttttaGTCGTAGTGTTTTTATCTTGATGAGTTTAGTAATATAAGCGAACTGAAGGATGCTGTTACTGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGANTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAATAGTCTCAAGCACCCGTgg                                                                                                                                                                                                                                                      <  1:597197/270‑1 (MQ=255)                             gAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCATCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTTGGGCTTTTCTCTGTCTGCCTTTCGTTGAATACCTGAGGCAAACATTCTCAAGC‑CCCGttggttcttttatg                                                                                                                                                                                                                                           >  2:9745/1‑262 (MQ=255)                                               gaGTTCAGTAATATAAGAGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAGTTTGTttctt                                                                                                                                                                                                                          <  1:9745/275‑1 (MQ=255)                                                                            tGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGTTGAATACCTGAGACAAACAGTCTCAATCACCCGTGGCTATTCTAGCTTAATCAGTTTGTTTCTTCTCCTTGATATACTCCTAAACACAtcacc                                                                                                                                                                                             >  2:204355/1‑272 (MQ=255)                                                                             gCTGTTACGGAATATATTGAATAATACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGNATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAGTTTGTTTCTTCTCATTGATATAATCCTAAAAAAATCACAt                                                                                                                                                                                            >  1:494866/1‑275 (MQ=255)                                                                             gCTGTTAAGGAATATATTGAATACTACAACAGCAGAAGAAGTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAGTTTGTTTCTTCTCCTTGATATAATCCTAAAAAAATCTCAt                                                                                                                                                                                            <  1:204359/275‑1 (MQ=255)                                                                               tGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGc                                                                                                                                                                                                                                                     >  1:531785/1‑216 (MQ=255)                                                                                   aCGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTAtt                                                                                                                                                                                                                                                 <  2:531777/216‑1 (MQ=255)                                                                                                aaTACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACNGTCCAACTTTTTGGGGTCAATACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAGTTTGTTTCTTCTCCTTGATATAATCCTAAAAAAATCTCATAAAATTAATATATGAGAt                                                                                                                                                                          <  1:543494/274‑1 (MQ=255)                                                                                                  tactacAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAGTTTGTTTCTTCTCCTTTATATAATCCTAAAAAAACCTCAAAAAATTAaaattttatttaat                                                                                                                                                                       >  2:543485/1‑265 (MQ=255)                                                                                                     tacAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCt                                                                                                                                                                                                                                                                                 <  1:665284/166‑1 (MQ=255)                                                                                                     tacAACAGCAGAAGAATTACCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAGTTTGTTTCTTCTCCTTGATATAATCCTAAAAAAATCTCATAAAATTAATATATGAGAtctgtc                                                                                                                                                                     >  1:586507/1‑269 (MQ=255)                                                                                                       caacaGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAgtttgtt                                                                                                                                                                                                                              >  2:391181/1‑215 (MQ=255)                                                                                                          cagcagAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGCGAATACCTGAGACAAACAGTCTCAAGCACACGTGGCTATTCTAGCTTAATAAGTTTGTTTCTTCTCCTTGATATAATCCTAAAAAAATCTCATAAAATTAATATATGATATAATCTTTATTc                                                                                                                                                               >  1:695531/1‑275 (MQ=255)                                                                                                           agcagAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAGTTTGTttctt                                                                                                                                                                                                                          <  1:391187/215‑1 (MQ=255)                                                                                                                             aaaTTAAAAGGGCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGCCTATTCTAGCTTAATAAGTTTGTTTCTTCTCCTTGATATACTCCTAAAAAAATCTCATAAAATTAATATATGAGATAATCGTTATTCATCAAAAAATTATTaaaat                                                                                                                                            >  2:556548/1‑273 (MQ=255)                                                                                                                                ttAAAAGGTCTGACTCCAATTTATTATCGGAATCATACCTATATGCCTCGTGTTTAACTGTCTAACTTTTAGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTTGCTATTCTAGCTTAATAAGTTTGTTTCTTATCCTTGATATAATCCTAAAAAAATCTCATAAAATTAATATATGAGATAATCTATAGTCAGCAAAAGATTATTAAAGGTTg                                                                                                                                         <  2:695522/275‑1 (MQ=255)                                                                                                                                          tGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCAccc                                                                                                                                                                                                                                                          >  1:165985/1‑152 (MQ=255)                                                                                                                                              tCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTgg                                                                                                                                                                                                                                                      <  2:165982/152‑1 (MQ=255)                                                                                                                                                  aTTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGTGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGc                                                                                                                                                                                                                                                     >  1:645992/1‑149 (MQ=255)                                                                                                                                                      aaTATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTAtt                                                                                                                                                                                                                                                 <  2:645983/149‑1 (MQ=255)                                                                                                                                                               ataatagttataTGTCTCGTTTTTAAATGTCCAACTTTTTGGCGTAAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAGTTTGTTTCTTCTCCTTGATATAATCCTAAAAAAATCTCATAAAATTAATATATGAGATAATCTTTATTCAGCAGAAGATTATTAAAGGTTGCTGTATTATTTAGCGATAAAAAAAGCCTGcc                                                                                                          <  2:494859/267‑1 (MQ=255)                                                                                                                                                                              cTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAGTTTGTTTCTTCTCCtt                                                                                                                                                                                                                    >  2:56909/1‑154 (MQ=255)                                                                                                                                                                              cTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAGTTTGTTTCTTCTCCTTGATATAATCCTAAAAAAATCTCATAAAATTAATATATg                                                                                                                                                                              >  2:633152/1‑192 (MQ=255)                                                                                                                                                                                cGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTgagacaaatacagcttgcgcccattgactgcaaattcagtaacatcggtaacccacttctcgtttggccgcgtagccttgaaatctctttggagaacattaggggcggtttgcccta                                                                                                                                                            <  2:386073‑M2/208‑118 (MQ=255)                                                                                                                                                                                cGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTgaga                                                                                                                                                                                                                                                                             <  1:687411‑M2/95‑5 (MQ=255)                                                                                                                                                                                cGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGtct                                                                                                                                                                                                                                                                   >  1:549692/1‑105 (MQ=255)                                                                                                                                                                                cGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCAccc                                                                                                                                                                                                                                                          >  1:344660/1‑114 (MQ=255)                                                                                                                                                                                 gtgtTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGtct                                                                                                                                                                                                                                                                   >  2:227397/1‑104 (MQ=255)                                                                                                                                                                                  tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAGTTTGTTTCTTCTCCTTGata                                                                                                                                                                                                                <  1:56909/154‑1 (MQ=255)                                                                                                                                                                                  tgtTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAGTTTGTTTCTTCTCCTTGATATAATCCTAAAAAAATCTCATAAAATTAATATATGAGAt                                                                                                                                                                          <  1:633161/192‑1 (MQ=255)                                                                                                                                                                                    tttAACTGTCCAACTTTTTGGGGTCAGTACGAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTgagacaaatacagcttgcgcccattgactgcaaattcagtaacatcggtaacccacttctcgtttggccgcgtagccttgaaatctctttggagaacattaggggcggtttgccctacctc                                                                                                                                                        >  1:386079‑M2/1‑87 (MQ=255)                                                                                                                                                                                    tttAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTgagacaaa                                                                                                                                                                                                                                                                         >  2:687402‑M2/1‑87 (MQ=255)                                                                                                                                                                                    tttAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAg                                                                                                                                                                                                                                                               <  2:549683/105‑1 (MQ=255)                                                                                                                                                                                    tttAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTgg                                                                                                                                                                                                                                                      <  2:344654/114‑1 (MQ=255)                                                                                                                                                                                    tttAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAGTTTGTTTCTTCTCCTTGATATAATCCTAAAAAAATCTCATAAAATTAATATATGAGATAATCTTTATTCAGCAGAAGATTATTAAAGGTTGCTGTATTATTTAGCg                                                                                                                          <  1:441628/238‑1 (MQ=255)                                                                                                                                                                                     ttAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAg                                                                                                                                                                                                                                                               <  1:227402/104‑1 (MQ=255)                                                                                                                                                                                      tAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCGGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAGTTTGTttcttc                                                                                                                                                                                                                         >  2:225199/1‑141 (MQ=255)                                                                                                                                                                                          tGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCGGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAGTTTGTTTCTTCTCCt                                                                                                                                                                                                                     <  1:225204/141‑1 (MQ=255)                                                                                                                                                                                             ccAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTgagaca                                                                                                                                                                                                                                                                           <  1:367287‑M2/84‑7 (MQ=255)                                                                                                                                                                                                 cTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACa                                                                                                                                                                                                                                                                       <  2:367281/84‑1 (MQ=255)                                                                                                                                                                                                                       ttGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCTGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTNAATAAGTTTGTTTCTTCTCCTTGATATAATCCTAAAAAAATCTCATAAAATTAATATATGAGATAATCTTTATTCAGCAGAAGATTATTAAAGGTTGCTGTATTATTTAGCGATAAAAAAAGCCTGCCAGATGGCAGGCTATTTAATAACGGCGTTATTATTGCAACAGCGAAATATCCGCaa                                                   <  1:563910/274‑1 (MQ=255)                                                                                                                                                                                                                         gATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTgagacaaatacagcttgcgcccattgactgcaaattcagtaacatcggtaacccacttctcgtttggccgcgtagccttgaaatctctttggagaacattaggggcggtttgcccta                                                                                                                                                            <  2:664917‑M2/167‑118 (MQ=255)                                                                                                                                                                                                                         gATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTgagacaaatacagcttgcgccc                                                                                                                                                                                                                                                           <  1:8495‑M2/72‑23 (MQ=255)                                                                                                                                                                                                                         gATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAGTTTGTTTCTTCTCCTTGATATAATCCTAAAAAAATCTCATa                                                                                                                                                                                           >  1:537923/1‑136 (MQ=255)                                                                                                                                                                                                                             tataGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTgagacaaatacagcttgcgcccattgactgcaaattcagtaacatcggtaacccacttctcgtttggccgcgtagccttgaaatctctttggagaacattaggggcggtttgccctacctc                                                                                                                                                        >  1:664926‑M2/1‑46 (MQ=255)                                                                                                                                                                                                                             tataGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTgagacaaatacagcttgcgcccattg                                                                                                                                                                                                                                                       >  2:8495‑M2/1‑46 (MQ=255)                                                                                                                                                                                                                             tataGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAGTTTGTTTCTTCTCCTTGATATAATCCTAAAAAAATCTCATAAAAt                                                                                                                                                                                       <  2:537915/136‑1 (MQ=255)                                                                                                                                                                                                                                      gTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGc                                                                                                                                                                                                                                                     >  2:191997/1‑65 (MQ=255)                                                                                                                                                                                                                                          ggCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTAtt                                                                                                                                                                                                                                                 <  1:192000/65‑1 (MQ=255)                                                                                                                                                                                                                                                     gtctgCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTtaata                                                                                                                                                                                                                                      >  2:269929/1‑65 (MQ=255)                                                                                                                                                                                                                                                      tctgCCTTTCGGTGAATACCTGAGACAAACAGtct                                                                                                                                                                                                                                                                   >  1:20730/1‑35 (MQ=255)                                                                                                                                                                                                                                                      tctgCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAGTTTGTTTCTTCTCCTTGATATAATCCTAAAAAAATCTCATAAAATTAATATATGAGATAATCTTTATTCAGCAGAAGATTATTAAAGGTTGCTGTATTATTTAGCGATAAAAAAAGCCTGCCAGATGGCAGGCTATTTAATAACGGCGTTATTATTGCAACATCGAAATATCCGCAACGCGCATCAACAGTTCGTTCATTTTCTCCaac                   >  2:544792/1‑273 (MQ=255)                                                                                                                                                                                                                                                         gCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCAccc                                                                                                                                                                                                                                                          >  1:322814/1‑41 (MQ=255)                                                                                                                                                                                                                                                         gCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAgtt                                                                                                                                                                                                                                  <  1:269934/65‑1 (MQ=255)                                                                                                                                                                                                                                                          ggctagattnattacgtgggaaatatacagcttgcgccccttgtctgcaaattcagtatcacctgtaacccacttctcgttttgccgcgtagccgtgaaatcgctttggagaacattaggggcggtttgccctacctctcctctgtaagagcggtatcgcttgaccttaatcgctgctttaagtgagagggttcccatcaggcgctgaacagctttatggttaatctgtttcccttctcgatgaagagacagcgttaccctacggtatccgtatc               >  2:280999‑M2/9‑17 (MQ=255)                                                                                                                                                                                                                                                          ccTTTCGGTGAATACCTGAGACAAACAGTCTCAAg                                                                                                                                                                                                                                                               <  2:20730/35‑1 (MQ=255)                                                                                                                                                                                                                                                          ccTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTTGCTATTCTAGCTTAATAAGTTTGTTTCTTCTACTTGATATAATCCTANAAAAATCTCATAAAATTAACATATGAGATAATATTTATTCAGCAGAAGATTATTAAAGGTTGCTGTATTATTTAGCGATAAAAAAAGCCTGCCAGATGGCAGGCTATTTAATAACGGCGTTATTATTGCAACAGCGAAATATCCGCAACGCGCAGGAACAGTTCGCGCAGTTTCTCCAGCATg                <  1:556557/274‑1 (MQ=255)                                                                                                                                                                                                                                                             ttCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTgg                                                                                                                                                                                                                                                      <  2:322808/41‑1 (MQ=255)                                                                                                                                                                                                                                                                       aCCTgagacaaatacagcttgtgcccattgactgcaaattcagtaacatcggtaacccacttctcgtttggccgcgtagccttgaaatctctttggagaacattaggggcggtttgccctacctctcctctgtaagagcggtatcgcttgaccttaatcgctgctttaagtgagagggttcccatcaggcgctgaacagctttatggttaatctgtttcccttctcgatgaagagacagcgttaccctacggtatccgtatcggcctctattctc  >  1:391477‑M2/1‑4 (MQ=255)                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                GGAGTGTTTCTTTGGAACCTTAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGCACCCGTGGCTATTCTAGCTTAATAAGTTTGTTTCTTCTCCTTGATATAATCCTAAAAAAATCTCATAAAATTAATATATGAGATAATCTTTATTCAGCAGAAGATTATTAAAGGTTGCTGTATTATTTAGCGATAAAAAAAGCCTGCCAGATGGCAGGCTATTTAATAACGGCGTTATTATTGCAACAGCGAAATATCCGCAACGCGCAGGAACAGTTCGCGCAGTTTCTCCAGCATGGTCAGACGGTTGAT  >  CP009273/3715226‑3715762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.