New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3824659 =	40 (1.040)	4 (0.110)	4/300	NT	10.4%	coding (843/1710 nt)	yicH	putative inner membrane‑anchored periplasmic AsmA family protein
	?	CP009273	3824972 =	31 (0.840)					coding (1156/1710 nt)	yicH	putative inner membrane‑anchored periplasmic AsmA family protein

GAGTTCATTTATGGTTCGCTGCATTTATTTGACCCGATTATAAACACGGAATTTTCCCCGCAGGGCGTAGCGCTGCGCCAGTTCACCAGCCGCTGGGAAGGGGGTATGGTCAGAACGTCAGGGAACTGGCTGCGTGACGGGAAAACGTTGATCCTTGATGATGCGGCAATTGCCGGGCTGGAATATACCTTGCCGAAAAACTGGCAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGACTTCCCGTGGCAGCTCACCGCGCTCGATGGTTACGGTGCCAACCTGACGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTCGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGC  >  CP009273/3824714‑3825237                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                          tgtttCATTTATGGTTCGCTGGATTTTTTTGACCCGATTATAAACACGGAATTTTCCCCGCAGGGCGTAGCGCTGCGCCAGTTCACCAGCNGCTGGGAAGGGGGTATGGTCAGAACGTCAGGGAACTGGCTGCGTGACGGGAAAACGTTGATCCTTGATGATGCGGCAATTGCCGGGCTGGAATATACCTTGCCGAAAAACTGGCAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAATCTGCGAATGAAGAGATTTAGCGCCAGcc                                                                                                                                                                                                                                                            <  1:494637/271‑1 (MQ=255)             ggTTCGCTGCATTTATTTGACCCGATTATAAACACGGAATTTTCCCCGCAGGGCGTAGCGCTGCGCCAGTTCACCAGCCGCTGGGAAGGGGGTATGGTCAGAACGTCAGGGAACTGGCTGCGTGACGGGAAAACGTTGATCCTTGACAATGCGGCAATNGCCGGGCTGGAATATACCTTGCCGAAAAACTGGCAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAAAAACCTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCAt                                                                                                                                                                                                                                               >  1:662918/1‑275 (MQ=255)              tttCGGTGCATTGAGTGGAACCGATTAACAACACGGAATGTTCCCGGCGGGGCGTAGGGTGGGGCCAGTGCACCAGCCGCTGGGAAGGGGGTATGGTCAGAACGTGAGGGAACTTGGTGCGTGAAGGGAAAACGTGGATCCTTGATGATGCGGAAATTGCCGGGCTGGAATATACCTTGCCGAAAAACTGGCAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCa                                                                                                                                                                                                                                                <  2:311532/272‑1 (MQ=255)                                aCCCGATTATAAACACGGAATTTTCCCCGCAGGGCGTAGCGCTGCGCCAGTTCACCAGCCGCTGGGAAGGGGGTATGGTCAGAACGTCAGGGAACTGGCTGCGTGACGGGAAAACGTTGATCCTTGATGATGCGGCAATTGCCGGGCTTGAATATACCTTGCCGAAAAACTGGCAACAGTTGTNGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCATTTATATCGACCATGACtt                                                                                                                                                                                                                             >  1:521542/1‑274 (MQ=255)                                     aTTATAAACACGGAATTTTCCCCGCAGGGCGTAGCGCTGCGCCAGTTCACCAGCCGCTGGGAAGGGGGTATGGTCAGAACGTCAGGGAACTGGCTGCGTGACGGGAAAACGTTGATCCTTGATGATGCGGCAATTGCCGGGCTGGATTATACGTTGCCGAAAAACTGGCAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCATGACTTCCCGTg                                                                                                                                                                                                                       >  1:632406/1‑275 (MQ=255)                                     aTTATAAACACGGAATTTCCCCCGCAGGGCGTAGCGCTGCGCCACTTCACCAGCCGCTGGGAAGGGGGTATGGTCAGAACGTCAGGGAACTGGCTGCGTGACGGGAAAACGTTGATCATTGATGATGCGGCAATTGCCGGGCTGGAATATACCTTGACGAAAAACTGGCAACAGTTGTGGATGNAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCAGCAATATGATCATTGATATAGACACTGACTTCCCga                                                                                                                                                                                                                        >  1:522275/1‑273 (MQ=255)                                                ggAATTTTCCCCGCAGGGCGTAGCGCTGCGCCAGTTCACCAGCCGCTGGGAAGGGGGTATGGTCAGAACGTCAGGGAACTGGCTGCGTGACGGGAAAACGTTGATCCTTGATGATGCGGCAATTGCCGGGCTGGAATATACATTGCCGAAAAACTGGCAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACAGAAGAGATTTAGCGCCAGCCGCAATATGATCATTGATATCGACCCAGACATCCCATggacgaccaccg                                                                                                                                                                                                            >  1:74213/1‑265 (MQ=255)                                                                            cgcCAGTTCACCAGCCGCTGGGAAGGGGGTATGGTCAGAACGTCAGGGAACTGGCTGCGTGACGGGAAAACGTTGATCCTTGATGATGCGGCAATTGCCGGGCTGGAATATACCTTGCCGAAAAACTGGCAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCaa                                                                                                                                                                                                                                                        >  1:530061/1‑203 (MQ=255)                                                                              ccAGGTCAACAANGGCTGGGAACGGGGTTTGGTCTGCACGGTAGGGGACGGGCTGCGGGACGGGAAAAAGTTGATACTTGAGGCGGAGGGAAGTGACGGGCTGGAATATAACTTGTCGAAAAACTGGCAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGAAATCTGATCATTGATATCGACCCTGACTTCCCGTGGCAGCTCACCGCGCTCGATGGTTACGGTGCCAACCTGAc                                                                                                                                                                                <  2:521535/273‑1 (MQ=255)                                                                                aGTTCACCAGCCGCTGGGAAGGGGGTATGGTCAGAACGTCAGGGAACTGGCTGCGTGACGGGAAAACGTTGATCCTTGATGATGCGGCAATTGCCGGGCTGGAATATACCTTGCCGAAAAACTGGCAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTg                                                                                                                                                                                                                                                    <  2:530053/203‑1 (MQ=255)                                                                                                                    cGTCAGGGAACTGGCTGCGTGACGGGAAAACGTTGATCCTTGATGATGCGGCAATTGCCGGGCTGGAATATACCTTGCCGAAAAACTGGCAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGACTTCCCGTGGCAGCTCACCGCGCTCGATGGTTACGGTGCCAACCTGAc                                                                                                                                                                                <  1:419623/235‑1 (MQ=255)                                                                                                                                ggCTGCGTGACGGGAAAACGTTGATCCTTGATGATGCGGCAATTGCCGGGCTGGAATATACCTTGCCGAAAAACTGGCAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTa                                                                                                                                                                                                                                                                     >  2:309654/1‑138 (MQ=255)                                                                                                                                 gCTGCGTGACGGGAAAACGTTGATCCTTGATGATGCGGCAATTGCCGGGCTGGAATATACCTTCCCGAAAAACTGGCAACAGCTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGACTTCCCGTGGCAGCTCACCGCGCTCGATGGTTACGGTGCCAACCTGACGCTGGTTACCGATCATAAATGGGGCGTCGGGAGTGGCTCGGCGAATCTGAATg                                                                                                                           >  2:82168/1‑275 (MQ=255)                                                                                                                                    gCGTGACGGGAAAACGTTGATCCTTGATGATGCGGCAATTGCCGGGCTGGAATATACCTTGCCGAAAAACTGGCAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAgcgc                                                                                                                                                                                                                                                                 <  1:309660/138‑1 (MQ=255)                                                                                                                                        acgccctgcggggaaaattccgtgtttataatcgggtcaaataaatgcagcgaaccataaatgaactcgctagcgttcatcgacagtttgccttcctgtgtctgccagtcatctttactgaagAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGACtt                                                                                                                                                                                                                             >  2:246974‑M2/124‑170 (MQ=255)                                                                                                                                            cctgcggggaaaattccgtgtttataatcgggtcaaataaatgcagcgaaccataaatgaactcgctagcgttcatcgacagtttgccttcctgtgtctgccagtcatctttactgaagAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGACTTCCCg                                                                                                                                                                                                                         <  1:246979‑M2/51‑1 (MQ=255)                                                                                                                                                      gATCCGTGATGAGGCGGCAATTGCCGGGCTGGAATATACCGTGCCGAAAAACTGGCAACAGTTGGGGATGGAAACGACACCCGGTTGTTTAAACAGCCTGCAACTGAAGAGATGTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGACTTCCCGTGGCAGCTCACCGCGCGCGATGGTTACGGTGCCAACCTGACGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATc                                                                                                      <  2:662909/275‑1 (MQ=255)                                                                                                                                                                  tgCGGCAATTGCCGGGCTGGAATATACCTTGCCGAAAAACTGGCAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCaa                                                                                                                                                                                                                                                        >  2:486069/1‑117 (MQ=255)                                                                                                                                                                   gCGGCAATTGCCGGGCTGGAATATACTTTGCCGAAAAACTGGCAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGACTTCCCGTGGCAGCTCACCGCGCTCGATGGTTACGGTGCCAACNTGACGCTGNTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTtc                                                                                          >  1:463449/1‑274 (MQ=255)                                                                                                                                                                    cGGCAATTGCCGGGCTGGAATATACCTTGCCGAAAAACTGGCAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGACTTCCCGTGGCAGCTCACCGCGCTCGATGGTTACGGTGCCAACCTGACGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTTAATGCCGACGCCNCTACATTCAATctgtttttatttct                                                                                         >  2:464793/1‑261 (MQ=255)                                                                                                                                                                      gCAATTGCCGGGCTGGAATATACCTTGCCGAAAAACTGGCAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGGGATTTAGCGCCAGCCGCAATCTg                                                                                                                                                                                                                                                    <  1:486076/117‑1 (MQ=255)                                                                                                                                                                                     gAATATACCTTGCCGAAAAACTGGCAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGACTTCCCGTGGCAGCTCACCGCGCTAGATGGGTACGGTGCCAACCTGACGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTCGCCCGTCGCTGGCGCt                                                                       >  1:625428/1‑275 (MQ=255)                                                                                                                                                                                               tGCCGAAAAACTGGCAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGACTTCCCGTGGCAGCTCACCGCGCTCGATGGTTACGGTGCCAACCTGACGCTGGTTAc                                                                                                                                                                       >  1:125125/1‑169 (MQ=255)                                                                                                                                                                                                gCCGAAAAACTGGCAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCaa                                                                                                                                                                                                                                                        >  2:283308/1‑87 (MQ=255)                                                                                                                                                                                                   gAAAAACTGGCAACAGGTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGACTTCCCGTGGCAGCTCACCGCGCTCGATGGTTACGGTGCCAACCTGACGCTGGTTACCGAt                                                                                                                                                                   <  2:125124/169‑1 (MQ=255)                                                                                                                                                                                                    aaaaaCTGGCAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTg                                                                                                                                                                                                                                                    <  1:283313/87‑1 (MQ=255)                                                                                                                                                                                                             cAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGACTTCCCGTGGCAGCTCACCGCGCTCGATGGTTACGGTGCCAACCTGACGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTCGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGaa                                               <  1:82169/275‑1 (MQ=255)                                                                                                                                                                                                             cAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCANTGATATCGNCCCTGACTTCCCCTGGCAGCTCACCGCGCTCGATGGTTACGGTGCCAACCTGACGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTCGCCCGGCGCTGGCGCTGACCGCCAACAGCAGCACGGTGaa                                               <  1:464800/275‑1 (MQ=255)                                                                                                                                                                                                                           ggaAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCATTGa                                                                                                                                                                                                                                            >  1:40626/1‑72 (MQ=255)                                                                                                                                                                                                                           ggaAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGCCTTCCCGTGGCATCTCACCGCGCTCGATGGTTACGGTGCCAACCTGACGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTCGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTg                                  <  1:370836/274‑1 (MQ=255)                                                                                                                                                                                                                               aCGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCATTGATATc                                                                                                                                                                                                                                        <  2:40626/72‑1 (MQ=255)                                                                                                                                                                                                                                     tcctgtgtctgccagtcatctttactgaagAGATTTAGCGCCAGCCGCAATCTGATCAtt                                                                                                                                                                                                                                              >  2:148761‑M2/31‑60 (MQ=255)                                                                                                                                                                                                                                         gtgtctgccagtcatctttactgaagAGATTTAGCGCCAGCCGCAATCTGATCATTGata                                                                                                                                                                                                                                          <  1:148762‑M2/34‑1 (MQ=255)                                                                                                                                                                                                                                                      ccTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGACTTCCCGTGGCAGCTCACCGCGCTCGATGGTTACGGTGCCAACCTGACGCTGGTTACCg                                                                                                                                                                     >  1:455515/1‑116 (MQ=255)                                                                                                                                                                                                                                                      ccTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGACTTCCCGTGGCAGCTCACCGCGCTCGATGGTTACGGTGCCAACCTGACGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTCGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCt        >  2:155183/1‑273 (MQ=255)                                                                                                                                                                                                                                                        tGCAACTGAAGAGATTTAGCGCCAGCCGTAATCTGATCATTGATATCGACCCTGACTTCCCGTGGCAGCTCACCGCGCTCGATGGTTACGGTGCCAACCTGACGCTgg                                                                                                                                                                           >  1:546905/1‑108 (MQ=255)                                                                                                                                                                                                                                                        tGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGACTTCCCGTGGCAGCTCACCGCGCTCGATGGTTACGGTGCCaa                                                                                                                                                                                      >  2:395680/1‑97 (MQ=255)                                                                                                                                                                                                                                                          cAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGACTTCCCGTGGCAGCTCACCGCGCTCGATGGTTACGGTGCCAACCTGACGCTGGTTACCGATCa                                                                                                                                                                 <  2:455508/116‑1 (MQ=255)                                                                                                                                                                                                                                                          cAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGACTTCCCGTGGCAGCTCACCGCGCTCGATGGTTACGGTGCCAACCTGACGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTCGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGc  <  1:155186/275‑1 (MQ=255)                                                                                                                                                                                                                                                            actgaagAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGACTTCCCGTGGCAGCTCACCGCGCTCGATGGTTACGGTGCCAACCTg                                                                                                                                                                                  <  1:395687‑M2/90‑1 (MQ=255)                                                                                                                                                                                                                                                            actgaagAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGACTTCCCGTGGCAGCTCACCGCGCTCGATGGTTACGGTGCCAACCTGACGCTGGTTAc                                                                                                                                                                       <  2:546896‑M2/101‑1 (MQ=255)                                                                                                                                                                                                                                                                aagAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGACTTCCCGTGGCAGCTCACCGCGCTCGATGGTTACGGTGCCAACCTGACGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAAGGCCGCCGCCGCGACATTCAATCgtg                                                                                                   >  1:630952‑M2/4‑172 (MQ=255)                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                          GAGTTCATTTATGGTTCGCTGCATTTATTTGACCCGATTATAAACACGGAATTTTCCCCGCAGGGCGTAGCGCTGCGCCAGTTCACCAGCCGCTGGGAAGGGGGTATGGTCAGAACGTCAGGGAACTGGCTGCGTGACGGGAAAACGTTGATCCTTGATGATGCGGCAATTGCCGGGCTGGAATATACCTTGCCGAAAAACTGGCAACAGTTGTGGATGGAAACGACACCCGGTTGGTTAAACAGCCTGCAACTGAAGAGATTTAGCGCCAGCCGCAATCTGATCATTGATATCGACCCTGACTTCCCGTGGCAGCTCACCGCGCTCGATGGTTACGGTGCCAACCTGACGCTGGTTACCGATCATAAATGGGGCGTCTGGAGTGGCTCGGCGAATCTGAATGCCGCCGCCGCGACATTCAATCGTGTTGATGTTCGTCGCCCGTCGCTGGCGCTGACCGCCAACAGCAGCACGGTGAATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGC  >  CP009273/3824714‑3825237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.