New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4226464 =	49 (1.270)	6 (0.160)	6/298	NT	14.5%	coding (275/639 nt)	yjbF	extracellular polysaccharide production lipoprotein
	?	CP009273	4226626 =	24 (0.660)					coding (437/639 nt)	yjbF	extracellular polysaccharide production lipoprotein

CTTAATGGCGGGCCGCAGTTATTTGTGGTGCTGGCCTTCGCTGAAGACGGACAACAAAAATGGGTCACTCAGGATCAGGCTACTCTCGTTACCCAACATGGCCGTCTGGTGAAGACTCTGCTCGGCGGCGACAACCTGATTGAAGTGAATAACCTTGCTGCCGACCCGCTGATTAAACCCGCACAAATCGTTGATGGCGCAAGCTGGACGCGCACGATGGGCTGGACCGAGTACCAGCAGGTACGCTACGCCACCGCACGCTCAGTCTTCAAATGGGATGGCACCGATACCGTCAAAGTCGGCAGCGATGAAACCCCGGTTCGCGTGCTGGACGAAGAAGTCTCCACCGACCAGGCGCGCTGGCATAACCGCTATTGGATCGACAGCGAAGGGCAAATTCGCCAGTCGGAACAGTATCTCGGCGCGGATTATTTTCCGGTGAAAACCACTCTCATCAAGGCGGCAAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGC  >  CP009273/4226355‑4226883                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                  cTTAATGGCGGGCCGCAGTTATTTGTGGTGCTGGCCTTCGCTGAAGACGGACAACAAAAATGGGTCACTCAGGATCAGGCTACTCTCGTTACCCAACATGGCCGTCTGGTGAAGACTCTGCTCGGCGGCGACAACCTGATTGAAGTGAATAACCTTGCTGCCGACCCGCTGATTAAACCCGCACAAATCGTTGATGGCGCAAGCTGGACGCGCACGATGGGCTGGACCGAGTAACAGCAGGTACGCTACGCCACCGCACGCCCAGTCTTCaact                                                                                                                                                                                                                                                                 >  1:409846/1‑272 (MQ=255)     aggtccggCNTCAGTTATGTGTGGTGCGGGCCTGCGCTGAAGACGGAAAACAAAAATGGGTCACTCAGGATCAGGCTACTCTCGTTACCCAACATGGCCGTCTGGTGAAGACTCTGCTCGGCGGCGACAACCTGAGTGAAGTGAATAACCTTGCTGCCGACCCGCTGATTAAACCCGCACAAATCGTTGATGGCGCAAGCTGGACGCGCACGCTGGGCTGGACCGAGTACCAGCAGGTACGCTACGCCACCGCACGCTCAGTCTTCAAATGGGAt                                                                                                                                                                                                                                                            <  2:257511/269‑1 (MQ=255)       tcacgccacgagctATTTGTGGCGCTGGCCTGCACTGAAGACCGACACCATAAATGGGTCACTCAGGATCAGGCTCCTCTCGTTACCCAACATGGCCGTCTGGTGAAGACTCTGCTCGGCGGCGACAACCTGATTGAAGTGAATAACCTTGCTGCCGACCCGCTGATTAAACCCGCACAAATCGTTGATGGCGCAAGCTGGACGCGCACGATGGGCTGGACCGAGTACCAGCAGGTACGCTACGCCACCGCACGCTCAGTCTTCAAATGGGAt                                                                                                                                                                                                                                                            <  2:500637/260‑1 (MQ=255)                             tgCTGGCCTTCGCTGAAGACGGACAACAAAAATGGGTCACTCAGGATCAGGCTACTCTCGTTACCCAACATGGCCGTCTGGTGAAGACTCTGCTCGGCGGCGACAACCTGATTGAAGTGAATAACCTTGCTGCCGACCCGCTGATTAAACCCGCACAAATCGTTGATGGCGCAAGCTGGGCGCGCACGATGGGCTGGACCGAGTACCAGCAGGTACGCTACGCCACCGCACGCTCAGTCTTCAAATGGGATGGCACCGATACCGTCAAAGTCGGc                                                                                                                                                                                                                                    >  1:109721/1‑275 (MQ=255)                                 ggCCTTCGCTGAAGACGGACAACAAAAATGGGTCACTCAGGATCAGGCTACTCTCGTTACCCAACATGGCCGTCTGGTGAAGACTCTGCTCGGCGGCGACAACCTGATTGAAGTGAATAACCTTGCTGCCGACCCGCTGATTAAACCCGCACAAATCGTTGATGGCGCAAGCTGGACGCGCACGATGGGCTGGACCGAGTACCAGCAGGTACGCTACGCCACCGCACGCTCAGTCTTCAAATggg                                                                                                                                                                                                                                                              <  1:332639/245‑1 (MQ=255)                                                                                   ctctCGGTACCCAACATGGCCGTCTGGTGAAGACTCTGCTCGGCGGCGACAACCTGATTGAAGTGAATAACCTTGCTGCCGACCCGCTGATTAAACCCGCACAAATCGTTGATGGCGCAAGCTGGACGCGCACGATGGGCTGGACCGAGTACCAGCAGGTACGCTACGCCACCGCACGCTCAGTCTTCAAATGGGAt                                                                                                                                                                                                                                                            <  1:200516/197‑1 (MQ=255)                                                                                                     cccGTCTGGTGACGACCCGGGTCGGCGGCGAAAACCTGATTGAAGTGAATCACCTTTGTGCCGCACCGCGGATGAAGCCGGCACAAATCGTTGATGGCGCAAGCTGGACGCGCACGATGGGCTGGACCGAGTACCAGCAGGTCCGCTACGCCACCGCACGCTCAGTCTTCAAATGGGATGGCACCGATACCGTCAAAGTCGGCAGCGATGAAACCCCGGTTCGCGTGCTGGACGAAGAAGTCTCCACCGACCAGGCGCGCTGGCATAACCGCTAt                                                                                                                                                            <  2:716707/274‑1 (MQ=255)                                                                                                                   taaatGCTCGGCGTCGACAACCTGATTGAAGTGAATAACCTTGCTGCCGACCCGCTGATTAAACCCGCACAAATCGTTGATGGCGCAAGCTGGACGCGCACGATGGGCTGGACCGAGTACCAGCAGGTACGCTACGCCACCGCACGCTCAGTCTTCAGAt                                                                                                                                                                                                                                                                 <  1:644019/156‑1 (MQ=255)                                                                                                                       tGCTCGGCGGCGACAACCTGATTGAAGTGAATAACCTTGCTGCCGACCCGCTGATTAAACCCGCACAAATCGTTGATGGCGCAAGCTGGACGCGCACGATGGGCTGGACCGAGTACCAGCAGGTACGCTACGCCACCGCACGCTCAGTCTTCAAATGGGATGGCACCGATACCGTCAAAGTCGGCAGCGATGAAACCCCGGTTCGCGTGCTGGACGAAGCAGTCTCCAACGACCAGGCGACCTGGCATAACCGAAATTGGaaacacatccaact                                                                                                                                           >  2:498379/1‑261 (MQ=255)                                                                                                                             gcggcgACAACCTGATTGAAGTGAATAACCTTGCTGCCGACCCGCTGATTAAACCCGCACAAATCGTTGATGGCGCAAGCTGGACGCGCACGATGGGCTGGACCGAGTACCAGCAGGTACGCTACGCCACCGCACGCTCAGTCTTCAAATGGGATGGCACCGATACCGTCAAAGTCGGCAGCGATGAAACCCCGGTTCGCGTGCTGGACGAAGAAGCCTCCACCCACCAGGCCCCCTGGCACAACCGCTATTGGACAGACAGCGAAGGGCaaac                                                                                                                                     >  2:675699/1‑273 (MQ=255)                                                                                                                                                             cagcccatcgtgcgcgtccagcttgcgccatcaacgatttgtgcgggtttaatcagcgggtcggcagcaaggttattcacttccatcaggttgtcgccgccgagcagagtcttcaAATGGGATGGCACCGATACCGTCAAAGTCGGCAGCGATGAAACCCCGGTTCGCGTGCTGGACGAAGAAGTCTCCACCGACCAGGCGCGCTGGCATAAc                                                                                                                                                                  >  1:46779‑M2/116‑213 (MQ=255)                                                                                                                                                                 ccatcgtgcgcgtccagcttgcgccatcaacgatttgtgcgggtttaatcagcgggtcggcagcaaggttattcacttcaatcaggttgtcgccgccgagcagagtcttcaAATGGGATGGCACCGATACCGTCAAAGTCGGCAGCGATGAAACCCCGGTTCGCGTGCTGGACGAAGAAGTCTCCACCGACCAGGCGCGCTGGCATAACCGCt                                                                                                                                                              <  2:46779‑M2/102‑1 (MQ=255)                                                                                                                                                                          gcgtccagcttgcgccatcaacgatttgtgcgggtttaatcagcgggtcggcagcaaggttattcacttcaatcaggttgtcgccgccgagcagagtcttcaAATGGGATGGCAcc                                                                                                                                                                                                                                                      >  1:644504‑M2/103‑116 (MQ=255)                                                                                                                                                                              ccagcttgcgccatcaacgatttgtgcgggtttaatcagcgggtcggcagcaaggttattcacttcaatcaggttgtcgccgccgagcagagtcttcaAATGGGATGGCACCGATa                                                                                                                                                                                                                                                  <  2:644495‑M2/18‑1 (MQ=255)                                                                                                                                                                                aacacacaacaaTCNTTGAGGGCCTAATCTGGCCGCGGACGTTGGGCTGGACCGAGTACCAGCTGTGACGCTACGCCACCGCACGCTCAGTCGTCAAATGGGAAGTCACCGATACCTTCAAAGTCGGCATCGATTAACCCCCGGTTCGCGTGCTGGACGAAGAAGTCTCCACCGACCAGGCGCGCTGGCATAACCGCTATTGGATCGACAGCGAAGGGCAAATTCGCCAGTCGGAACAGTATCTCGGCGCGGATTATTTTCCGGTGCAAACCAct                                                                                 <  2:524535/265‑1 (MQ=255)                                                                                                                                                                                      cacaAATCGTTGATGGCGCAAGCTGGACGCGCACGATGGGCTGGACCGAGTACCAGCAGGTACGCTACGCCACCGCACGCTCAGTCTTCAAATGGGAt                                                                                                                                                                                                                                                            >  2:297412/1‑98 (MQ=255)                                                                                                                                                                                      cacaAATCGTTGATGGCGCAAGCTGGACGCGCACGATGGGCTGGACCGAGTACCAGCAGGTACGCTACGCCACCGCACGCTCAGTCTTCAAATGGGATGGCACCGATACCGTCAAAGTCGGCAGCGATGAAACCCCGGTTCGCGTGCTGGACGAAGAAGTCTCCACCGACCAGGCGCGCTGGCATAACCGCTATTGGATCGACAGCGAAGGGCAAATTCGCCAGTCGGAACAGTATCTCGGCGCGGATTATTTTCCGGTGAAAACCACTCtcatc                                                                           >  1:715397/1‑275 (MQ=255)                                                                                                                                                                                          aaTCGTTGATGGCGCAAGCTGGACGCGCACGATGGGCTGGACCGAGTACCAGCAGGTACGCTACGCCACCGCACGCTCAGTCTTCAAATGGGATGGCa                                                                                                                                                                                                                                                        <  1:297418/98‑1 (MQ=255)                                                                                                                                                                                                                         tcggcagcaaggttattcacttcaatcaggttgtcgccgccgagcagagtcttcaaa                                                                                                                                                                                                                                                                  <  2:191509‑M2/2‑1 (MQ=255)                                                                                                                                                                                                                              cTGGACCGAGTACCAGCAGGTACGCTACGCCACCGCACGCTCAGTCTTCAAATGGGATGGCACCGATACCGTCAAAGTCGGCAGCGATGAAACCCCGGTTCGCGTGCTGGACGAAGAAGTCTCCACCGa                                                                                                                                                                                     >  1:16729/1‑129 (MQ=255)                                                                                                                                                                                                                              cTGGACCGAGTACCAGCAGGTACGCTACGCCACCGCACGCTCAGTCTTCAAATGGGATGGCACCGATACCGTCAAAGTCGGCAGCGATGAAACCCCGGTTCGCGTGCTGGACGAAGAAGTCTCCACCGACCAGGCGCGCTGGCATAACCGCTATTGGATCGACAGCGAAGGGCaaa                                                                                                                                      >  1:557423/1‑176 (MQ=255)                                                                                                                                                                                                                                  aCCGAGTACCAGCAGGTACGCTACGCCACCGCACGCTCAGTCTTCAAATGGGATGGCACCGATACCGTCAAAGTCGGCAGCGATGAAACCCCGGTTCGCGTGCTGGACGAAGAAGTCTCCACCGACCAg                                                                                                                                                                                 <  2:16729/129‑1 (MQ=255)                                                                                                                                                                                                                                  aCCGAGTACCAGCAGGTACGCTACGCCACCGCACGCTCAGTCTTCAAATGGGATGGCACCGATACCGTCAAAGTCGGCAGCGATGAAACCCCGGTTCGCGTGCTGGACGAAGAAGTCTCCACCGACCAGGCGCGCTGGCATAACCGCTATTGGATCGACAGCGAAGGGCAAATTCg                                                                                                                                  <  2:557414/176‑1 (MQ=255)                                                                                                                                                                                                                                        tACCAGCAGGTACGCTACGCCACCGCACGCTCAGTCTTCAAATGGGATGGCACCGATACCGTCAAAGTCGGCAGCGATGAAACCCCGGTTCGCGTGCTGGACGAAGAAGTCTCCACCg                                                                                                                                                                                      >  1:177124/1‑118 (MQ=255)                                                                                                                                                                                                                                          ccAGCAGGTACGCTACGCCACCGCACGCTCAGTCTTCAAATGGGATGGCACCGATACCGTCAAAGTCGGCAGCGATGAAACCCCGGTTCGCGTGCTGGACGAAGAAGTCTCCACCGACCAGGCGCGCTGGCATAACCGCTATTGGATCGACAGCGAAGGGCAAATTCGCCAGTCGGAACAGTATCTCGGCGCGGATTATTTTCCGGTGAAAACCACTCTCATCAAGGCGGCAAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAgtgt                       <  1:164140/275‑1 (MQ=255)                                                                                                                                                                                                                                          cacttcaatcaggttgtcgccgccgagcagagtcttcaAATGGGATGGCACCGATACCGTCAAAGTCGGCAGCGATGAAAcc                                                                                                                                                                                                                        >  1:311704‑M2/39‑82 (MQ=255)                                                                                                                                                                                                                                            agcagGTACGCTACGCCACCGCACGCTCAGTCTTCAAATGGGATGGCACCGATACCGTCAAAGTCGGCAGCGATGAAACCCCGGTTCGCGTGCTGGACGAAGAAGTCTCCACCGACCa                                                                                                                                                                                  <  2:177121/118‑1 (MQ=255)                                                                                                                                                                                                                                              tcaatcaggttgtcgccgccgagcagagtcttcaAATGGGATGGCACCGATACCGTCAAAGTCGGCAGCGATGAAACCCCgg                                                                                                                                                                                                                    <  2:311698‑M2/48‑1 (MQ=255)                                                                                                                                                                                                                                                  tacgctacgtCACCGCACGCCCAGTCTTCAAAGGGGACGGCACCGATACCTACAAAGTCCGCCGCGCTGAAACCCCGGTTGGCGTGCTGGACGAAGAAGGCTCCACCGACCAGGCGCGCTGGCATAACCGCTATTGGATCGACAGCGAAGGGCAAAATAGCCAGTCGGAACAGTATCGCGGCGCGGATTATTTTCCGTTGACAACCACGCGAATCAAAGCGGCAAAACAAAGATTAAACAAAATAATATCGAGTTGCTGTAGAGTGTGGGAGCgg               >  2:164137/1‑274 (MQ=255)                                                                                                                                                                                                                                                           ccACCGCACGCTCAGTCTTCAAATGGGATGGCACCGATACCGTCAAAGTCGGCAGCGATGAAACCCCGGTTCGCGTGCTGGACGAAGAAGTCTCCACCGACCAGGCGCGCTGGCATAACCGCTATTGGATCGACAGCGAAGGGCAAATTCGc                                                                                                                                 >  1:5780/1‑152 (MQ=255)                                                                                                                                                                                                                                                               cGCACGCTCAGTCTTCAAATGGGATGGCACCGATACCGTCAAAGTCGGCAGCGATGAAACCCCGGTTCGCGTGCTGGACGAAGAAGTCTCCACCGACCAGGCGCGCTGGCATAACCGCTATTGGATCGACAGCGAAGGGCAAATTCGCCAGt                                                                                                                             <  2:5780/152‑1 (MQ=255)                                                                                                                                                                                                                                                               cGCACGCTCAGTCTTCAAATGGGATGGCACCGATACCGTCAAAGTCGGCAGCGATGAAACCCCGGTTCGCGTGCTGGACGAAGAAGTCTCCACCGACCAGGCGCGCTGGCATAACAGCTATTGGATCGACAGCGAAGGGCAAATTCGCCAGTCGGAACGGTATCTCGGCGCGGATTATTTTCCGGTGAAAACCACTCTCATCAAGGCGGCAAAACAATGATTAAACAAACTATTGTCGCGTTGATGTTGAGAGTGGGAGAGTCATAGGACTTcgc  >  1:15753/1‑275 (MQ=255)                                                                                                                                                                                                                                                                gCACGCTCAGGCGTCAAATGGGCTGGCACCGATACCGTCAAAGTCGGCCGCGATGAAACCCCGGTTCGCGTGCTGTACGAAGAAGTCGCCACCGACCAGGCGCGCTGGCATAACCGCGATTGGATCGACAGCGAAGGGCAAATTCGCCAGTCGGAACAGTATCTCGGCGCGGATTATTTTCCGGTGAAAACCACTCTCATCAAGGCGGCAAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTcgc  <  2:715387/274‑1 (MQ=255)                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                  CTTAATGGCGGGCCGCAGTTATTTGTGGTGCTGGCCTTCGCTGAAGACGGACAACAAAAATGGGTCACTCAGGATCAGGCTACTCTCGTTACCCAACATGGCCGTCTGGTGAAGACTCTGCTCGGCGGCGACAACCTGATTGAAGTGAATAACCTTGCTGCCGACCCGCTGATTAAACCCGCACAAATCGTTGATGGCGCAAGCTGGACGCGCACGATGGGCTGGACCGAGTACCAGCAGGTACGCTACGCCACCGCACGCTCAGTCTTCAAATGGGATGGCACCGATACCGTCAAAGTCGGCAGCGATGAAACCCCGGTTCGCGTGCTGGACGAAGAAGTCTCCACCGACCAGGCGCGCTGGCATAACCGCTATTGGATCGACAGCGAAGGGCAAATTCGCCAGTCGGAACAGTATCTCGGCGCGGATTATTTTCCGGTGAAAACCACTCTCATCAAGGCGGCAAAACAATGATTAAACAAACTATTGTCGCGTTGCTTTTGAGTGTGGGAGCGTCATCGGTCTTCGC  >  CP009273/4226355‑4226883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.