| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4456921 | 68 (1.770) | 7 (0.190) | 4/300 | NT | 9.8% | coding (143/948 nt) | treR | trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor |
| ? | CP009273 | = 4457009 | 64 (1.740) | coding (55/948 nt) | treR | trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor | |||||
GGCAACTAATTGCGGGGAAAACTGACTTTCCATCATGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCGTGCATTCAGCAATGGGTAAAGTCTGGTTTATCGTTGGTTTAGTTGTCAGCAGGTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCTGATCCCACGCCTC > CP009273/4456740‑4457269 | ggCAACTAATTGCGGGGAAAACTGACTTTCCATCATGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGACTCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGTTGAGCTGACTAAAGCCGCTTTCGTTATTCAGCACCCGGGNAACTGTAGAtttc < 2:535331‑M2/274‑5 (MQ=255)ggCAACTAATTGCGGGGAAAACTGACTTTCCATCATGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCGGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGCTTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTACAtttc < 1:10450‑M2/274‑5 (MQ=255) aaCTACTTTCGGGGAAAACTGACTTTCCATCATGTTTGTGTCGTAACCTTTGTCATTGACCGCTGGCATCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACTCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCa < 2:195145/275‑1 (MQ=255) aaCTAATTGCGGGGAAAACTGTCTTTCCATCATGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACCACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCa < 1:386161/275‑1 (MQ=255) aCTAATTGCGGGTAAAACTGACTTTCCATCATGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTNCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGACACTGTAGATTTCCCCa < 1:535339/274‑1 (MQ=255) aaTTGCGGGGAAAACTGACTTTCCATCATGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGCGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCAcgc > 1:320318/1‑274 (MQ=255) aaaaCTGACTTTCCATCATGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGCGCTGGCTCACGCCCCTTTCGTTATTCAGCCCCCCGGAACCTGCACATTACCCCACCCCGCATCAgccc > 1:123919/1‑273 (MQ=255) tGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGcc > 2:613954/1‑275 (MQ=255) tCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATACCTT‑TGATGGTCAGCAGagt > 1:320451/1‑273 (MQ=255) tAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGCTTTCCCCACGCCGCTTAAgcgcg > 1:209129/1‑247 (MQ=255) agcgtGTTAATAGAAATCGGGCAGAATGGTTTGACCGGCGTGATTTGCTGCCAACGAATCCAGAGGGGTAACAATGATGGCGACCACTTTATCGCGTTGCCCACGCATGGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTGGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCGCACGCCGCTTAAGCGCGCGATATCGT‑TGATGGGCAGCCGATTTTGCa < 2:656211/271‑1 (MQ=255) aCCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCa < 1:613963/275‑1 (MQ=255) aGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCAACCGGGAAACTGTAGATTTCCCCACGCCGCTTACGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCCTCCTGTTGTcc > 1:150053/1‑275 (MQ=255) aaCGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGAtttc < 1:61975‑M2/213‑5 (MQ=255) gCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCTCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTAACCACTGCTTCAACACACTATCGGGTGAGCTGGCTCATGCCGCTTCCCTTATTCAGAACCCTGCAAACTGTAGATTTCCCCACGCCGCTTACAGACGCCATCCCGT‑TGATGGTCAGGCTATCTTGCAAGCtgtatgcctttaa > 2:494843/1‑265 (MQ=255) cTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCa < 2:61974/213‑1 (MQ=255) gcagcaTGGTTTGAACTGCGAGATTTTCTGACAACGACTCCAGACGGGTAAAAATGATGGCGACCACTTTATCGCTTTGCCNACGCATAGCGCGCGCAGAGCGTGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCGCCACGCCGCTTAAGCGCGCGATATCTT‑TTATGGTCAGCCGATTTTGCATCCTGTTGTc < 1:494850/265‑1 (MQ=255) ttGAACGGCGAGTTTTTCTGACAACGAATCCAGACGGGTAACAATGATTGCGACCACTTTATCGCTTTGCCCACGCATCGCGCGCGCAGAGCGGGAGGGGGACAATCCAAGCTGTTTCATCACTGCTTCAACCACTTCGCGGGTGCGCTGTATCACGCCGCTTTCGTTATTCAGCACCCGGCTCACTGTAGAGTTCCCCACTCAGCTTAAGCGCCCGCTATCTTCTGTTGATCA‑CCGATATTTCTTCCTCGTTTCCTGTTACCTCttttttttgt > 2:371398/1‑271 (MQ=255) atggCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTAttt < 1:346498/273‑1 (MQ=255) aCGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGAtt < 2:323175‑M2/190‑3 (MQ=255) tataatacctgcTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGNTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAattatt < 1:599090/261‑1 (MQ=255) cGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGAtttccc > 1:323181‑M2/1‑184 (MQ=255) cGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGc > 1:208510/1‑275 (MQ=255) gacatgttCAGACAACGACAACAGACCGGGAACAAGGACTGCGACCCCTTTAGCGCTTTGCCCACGCATAGCGCTCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TTATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGc < 2:150052/268‑1 (MQ=255) aTTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCa < 1:293772/233‑1 (MQ=255) aCGAATCCAGACTGGTAACAATGATGGCGACCACTTTATCGCTGTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCGt < 1:50468/274‑1 (MQ=255) aCGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCAGCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCGt < 1:366823/274‑1 (MQ=255) tCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCAt > 1:3677/1‑218 (MQ=255) gACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCtg < 2:3677/218‑1 (MQ=255) gACCGGTAACCATGATGGCGACCACTTTAGCGCTTTCCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCGTGCATTCAGCa < 2:300346/275‑1 (MQ=255) aCGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTNGCTCACGCCGTCTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCGTGCATTCAGCaa < 1:648731/275‑1 (MQ=255) gggTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAgcgcg > 2:535658/1‑180 (MQ=255) aaCAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTACATTTCCCCACGCCGCTTAAGCGCGCGat < 1:535666/180‑1 (MQ=255) atgGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGAtttc < 2:366860‑M2/150‑5 (MQ=255) tgGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGAtt < 2:582509‑M2/147‑3 (MQ=255) tgGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTTTTGTCCTGTAACGTGTTGTTTAATTATTTGCGCCTAACGTTACCCTTTTATTCAGCANtttttaacttcttg > 2:522161/1‑262 (MQ=255) ggCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCGTGCATTCAGCAATGGGTAAAGTCTGGt > 1:128082/1‑275 (MQ=255) cGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCa < 1:366866/150‑1 (MQ=255) gACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGAtttccc > 1:582518‑M2/1‑141 (MQ=255) tGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGAttt > 2:35209/1‑174 (MQ=255) tGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCGAGCATTCAGCAATGGGTAAAGTCTGGTTTATCGTTGGTTTAGTTGt > 1:458777/1‑275 (MQ=255) ccACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCGTGCATTCAGCAATGGGTAAAGTCTGGTTTATCGTTGGTTTAGTTGTcag < 2:208506/275‑1 (MQ=255) taCGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCGTGCATTCAGCAATGGGTAAAGTCTGGTTTATCGTTGGTTTAGTTGTcagc < 1:13359/274‑1 (MQ=255) cACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGa < 2:620407/121‑1 (MQ=255) cACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCa < 1:35209/174‑1 (MQ=255) agctagtcacgcgagcAGAGCGGGAAGGTGGAAATCCATGCTGATTCATCCCTGCTTCAACACGCTGGCTGTTGAGCTGGCTCACTCCGCTTTCTGTATTCAGCACCCTGGAAACTGGATATTTCCCCACGCCGCTTAAGCGCTCGATATCTT‑TTATGGTCAGCCTAGTTTGCATCCTGTTATCCTGTAACTTGTTGTTTAATTATTTGACCCTTACGTTACCCGTGCATTCAGCAATGGGTAAAGTCTGGTTTATCGTTGGTTTAGTTGTcagc < 2:120368/266‑1 (MQ=255) ggaagtgcAGGGAGGGAAGGGGAAAATCCATGCTGTTTCATTACTGCTTAAACACGCTCGCGGGTGAGCTGGCTCCCGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCGTGCATTCAGCAATGGGTAAAGTCTGGTTTATCGTTGGTTTAGTTGTCAGCAGGtatta < 2:498166/269‑1 (MQ=255) gcgcgcgcAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGAGATCTT‑TGATGGTCAGCCGATTTTGCATcc > 2:387673/1‑169 (MQ=255) gcgcAGAGGGGGCAGGGGACCATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCGTGCATTCAGCAATGGGTAAAGTCTGGTTTATCGTTGGTTTAGTTGTCAGCAGGTATTatat < 2:128081/274‑1 (MQ=255) gcgcAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCtgtt < 1:387679/169‑1 (MQ=255) cgcAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGACACTGTAGAtttc < 2:503257‑M2/112‑5 (MQ=255) cgcAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTaa > 2:278302/1‑177 (MQ=255) gagCGGGAAGGTGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTAGTAAGCGACAGGGAATCTGTAGATTTCCCCa < 1:503264/112‑1 (MQ=255) gagCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACgtg < 1:278307/177‑1 (MQ=255) ggAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGAttt > 2:51280/1‑142 (MQ=255) ggAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCAt > 1:367675/1‑147 (MQ=255) aaTCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCa < 1:51280/142‑1 (MQ=255) aaTCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCtg < 2:367669/147‑1 (MQ=255) tcaaTGCTGATTCATCAGTGCTGCAACACGCTCGCGGGTGAGCTGGCGAACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCTCAAGCCGCTTAAGCGAGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCGTGTTGGCGTGTAACGTGTTGTTTAATTATTTGAGCCTAAGGTTACCCGTGCATTCAGCAATGGGTAAAGTCTGGTTTATCGTTGGTTTAGTTGTCAGCAGGTATTATATCGCCATAGATGCTACGAAtatta < 2:10450/272‑1 (MQ=255) taTTCATCACTGCTTCAACCCGCTCGCGGGGGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCGTGCATTCAGCAATGGGTAAAGTCTGGTTTATCGTTGGTTTAGTTGTCAGCAGGTATTATATCGCCATAGATGCTACGAATATTATTGGAt < 2:320312/272‑1 (MQ=255) gATTCATCACTGATTCAACACGCTCGCGGGTGTGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCGTGCATTCAGCAATGGGTAAAGTCTGGTTTATCGTTGGTTTAGTTGTCAGCAGGTATTATATCGCCATAGATGCTACGAATATTATTGGAtt < 1:399501/274‑1 (MQ=255) caCTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCGTGCATTCAGCAATg > 1:722757/1‑190 (MQ=255) gCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGAtttccccttcccgctctgcgcgcgctatgcgtgggcaaagcgataaagtggtcgccatcattgttacccgtctggattcgttgtcagaaaatctcgccgttcaaaccatgcttccagcg < 2:390443‑M2/187‑120 (MQ=255) gCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGAtttccccttcccgctctgcgcgcgctatgcgtgg < 2:601922‑M2/102‑35 (MQ=255) gCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCGTGCATTCAGCAATGGGTa < 2:722747/190‑1 (MQ=255) cTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCAt > 2:712277/1‑121 (MQ=255) cTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTATCGTTATTCAGCACCCGGGAAACTGTAGATGTCCACGCGCCGCTTAAGCGCGCGATATCTT‑TGATAGtta > 2:354820/1‑106 (MQ=255) cAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGAtttccccttcccgctctgcgcgcgctatgcgtgggcaa > 1:601931‑M2/1‑64 (MQ=255) cAACACGCTAGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGAtttccccttcccgctctgcgcgcgctatgcgtgggcaaagcgataaagtggtcgccatcattgttacccgtctggattcgttgtcagaaaatctcgccgttcaaaccatgctgccagcgttct > 1:390449‑M2/1‑64 (MQ=255) aaCACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCtg < 1:712287/121‑1 (MQ=255) aaCACGCTCGCGGGTCAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCAAGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCg < 1:354826/108‑1 (MQ=255) cGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGa > 2:87882/1‑94 (MQ=255) cTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAatt > 1:365415/1‑140 (MQ=255) tCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCCGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGGTTaa > 2:707713/1‑137 (MQ=255) cgcgGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGt < 1:87883/94‑1 (MQ=255) cgGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTAttt < 2:365409/140‑1 (MQ=255) gtgTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTCGTTTAattat < 1:707723/135‑1 (MQ=255) tCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAgcgcg > 2:686614/1‑63 (MQ=255) cgccgcTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTaa > 2:589575/1‑106 (MQ=255) gccgcTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGat < 1:686623/63‑1 (MQ=255) gcTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACgtg < 1:589584/106‑1 (MQ=255) cAGCACCCGGGAAACTGTAGAtttccccttcccgctctgcgcgcgctatgcgtgg < 1:132736‑M2/55‑35 (MQ=255) cAGCACCCGGGAAACTGTAGAtttccccacgccgcttaagcgcgcgctatgcgtgggcaaagcgataaagtggtcgccatcattgttacccgtctggattcgttgtcagaaaatctcgccgttcaaaccatgctgccagcgttctatgaacaaggttacgacccaatcatgatggaaagtcagttttccccgcaattagttgccgaacatttgggagtgctgaaacggcgtaatatcgacggcgtagtgctgttcggttttactggcataacaga < 1:426111‑M2/275‑255 (MQ=255) aCCCGGGAAACTGTAGAtttccccttcccgctctgcgcgcgctatgcgtgggcaa > 2:132735‑M2/1‑17 (MQ=255) ccGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGTGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCGTGCATTCAGCAATGGGTAAAGTCTGGTTTATCGTTGGTTTAGTTGTCAGCAGGTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCTGATCCCACGCctc < 1:371404/275‑1 (MQ=255) gggAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCGTGCATTCAGCAATGGGTAAAGTCTGGTTTATCGTTGGTTTAGTTGTc > 2:288713/1‑164 (MQ=255) aaCTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCGTGCATTCAGCAATGGGTAAAGTCTGGTTTATCGTTGGTTTAGTTGTcagca < 1:288718/164‑1 (MQ=255) aCTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCcgttg > 1:433582/1‑69 (MQ=255) aGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCGTGCATTCAGCAATGGGTAAAGTCTGGTTTATCGTTGGTTTAGTTGTCAGCAGGTATTATATCGCCATAGATGCTACGAAtattat > 2:523948/1‑192 (MQ=255) | GGCAACTAATTGCGGGGAAAACTGACTTTCCATCATGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGGTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTT‑TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCGTGCATTCAGCAATGGGTAAAGTCTGGTTTATCGTTGGTTTAGTTGTCAGCAGGTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCTGATCCCACGCCTC > CP009273/4456740‑4457269 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |