| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,363,021 | G→T | 5.6% | intergenic (+42/+161) | yjeI → / ← yjeJ | DUF4156 family lipoprotein/uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,363,021 | 0 | G | T | 5.6% | 256.6 / 2.8 | 77 | intergenic (+42/+161) | yjeI/yjeJ | DUF4156 family lipoprotein/uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base G (34/38); new base T (2/3); total (36/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01 | |||||||||||
GTACTGCGACAGGTAAGCAAAGCAACTGGCTTTCCGGGCAACACGGAGAAGAAGGCGGTTCTATGCGCGGCGCAGCAAACGATCTGCGCAACCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTGAACACGTAAGTGATGCAGCGCGCGTAAGCATTGATCCTGGGTTAGCGGTTGGGCGTTATTCGCCGCTAC > CP009273/4362765‑4363286 | gTAGTGCGACAGGTAAGCAAAGGAACTGGCTTGCCGGGAAAAACGGAGAAGAAGGCGGTGCTATGGGCGGCGCAGCAAACGNTCTGCGCANCCAGGCGGCTGCCATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAACCGTATAATTGCCTGATGCGCTTCGCTTATCAGGc < 1:462557/274‑1 (MQ=255)gTACTGCGACAGGTAAGCAAAGCAACTGGCTTTCCGGGCAACACGGAGAAGAAGGCGGTTCTATGCGCGGCGCAGCAATCGATCTGCGCAACCAGGCGGCTGCAATGGGCGGTAACGTGATGTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGc < 1:690329/274‑1 (MQ=255) ggggagaGGCAAGAAAAGAAGGTGGCTTTCCGGGCAAAACGAGGAAGAAGGCGGTTCTATGCGCGGCGCAGCAAACGATCTGCGCAACCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGc < 2:379812/264‑1 (MQ=255) aagcaaagcaACTGGCTTTCCGGGCAACACGGAGAAGAAGGCGGTTCTATGCGCGGCGCAGCAAACGATCTGCGCAACCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGACTGTTGTCCAGTTTTGTCCCGACGGATAGCCAGCTTATCGGTCAGGTTTATAAGTGCCCGCACTGATGTGATCCAGCGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTGCGCTTCTCAGGCCTTNTTAAGGCCtt > 2:62364/1‑274 (MQ=255) tagatccaatanactggccctctgcgcctggctgctcgtccccaatgcgtacactctgaccggcagcactcaattcgttgctggagctacaacccgccatcagtagcCCGTCGCTGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCt < 2:65469‑M2/168‑1 (MQ=255) ttCTATGCGCGGCGCAGCAAACGATCTGCGCAACCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGcgcttcgc > 1:197007/1‑207 (MQ=255) aTGCGCGGCGCAGCAAACGATCTGCGCAACCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTAt < 2:197004/207‑1 (MQ=255) ggcgCAGCAAACGATCTGCGCAACCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATc > 2:429169/1‑202 (MQ=255) ggcgCAGCAAACGATCTGCGCAACCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTAc > 2:138224/1‑210 (MQ=255) gcagcaAACGATCTGCGCAACCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTgaga < 1:404070/239‑1 (MQ=255) cagcaAACGATCTGCGCAACCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGCTGCGCTTCGCTTATCAGGc < 1:587732/202‑1 (MQ=255) cagcaAACGATCTGCGCAACCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGc < 1:429176/202‑1 (MQ=255) cagcaAACGATCTGCGCAACCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATaa < 1:138225/210‑1 (MQ=255) agcaAACGATCTGCGCAACCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg > 1:224897/1‑274 (MQ=255) gcgcAACCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATgga > 1:102222/1‑214 (MQ=39) gcgcAACCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATc > 1:198585/1‑185 (MQ=255) gcgcAACCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGCATGCTTGAGAATTTGTAGGACGGATAAg > 1:176121/1‑243 (MQ=255) gcgcAACCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAAGCCGGCTAAGGCGTTTACGACGCATCCGGCATGACCAACGaa > 1:132372/1‑274 (MQ=255) gcgcAACCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGAAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGAAAAACGTAGAATTGCCTGATGCGCGTCGCTTATc > 2:11055/1‑185 (MQ=255) aaCCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGAtttg < 2:102221/216‑4 (MQ=38) aaCCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGc < 2:198582/185‑1 (MQ=255) aaCCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGc < 1:11055/185‑1 (MQ=255) aCCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAGGGCGTTTACGCCGCATGAGGCATGACAAACGAtaccgt > 2:127663/1‑270 (MQ=255) aCCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTNTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTg < 1:620132/225‑1 (MQ=255) cggcTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGTAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGAGTATCGGTCAGGTTTATTAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAg < 1:455640/275‑1 (MQ=255) cTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATc > 2:564879/1‑171 (MQ=255) aaTGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGGTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGc < 1:564888/171‑1 (MQ=255) ggTTACTTGATTTATGGCATCAGTAGCCCGTCGTAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTTCTGTGATCCAGAGGCNGTGTGACACACGTATAATTGCCTGATGCGCTTCGCTTATCAGGTCTACATAAGGCATTTCAACTGATTGAATTCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGc < 1:596737/272‑1 (MQ=255) tcagtagcCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCAtt > 1:267019‑M2/9‑275 (MQ=255) ccgcgggAANGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATgag < 2:267014/271‑1 (MQ=255) tgttgtCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCaa > 2:38257/1‑206 (MQ=255) gtCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGAt < 1:38257/206‑1 (MQ=255) ccAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAgg > 2:539796/1‑173 (MQ=255) aGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGAGCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGAAAAAATAATTTCGACTgtggt > 1:274495/1‑275 (MQ=255) ttttGTCCCGACGGATAGCCAGATTATCGGTCAGTTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCAtt > 1:466017/1‑128 (MQ=255) ttttGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGtt < 1:539804/173‑1 (MQ=255) ttttGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCa > 2:706737/1‑234 (MQ=255) gTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCaa < 2:466010/128‑1 (MQ=255) gTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAATGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATAGCTCCAGCCt < 1:706747/234‑1 (MQ=255) tCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCAttt > 2:520/1‑212 (MQ=255) gACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAgg < 1:520/212‑1 (MQ=255) tggCCAGATNTTCGGTCAGGTTTATAAGGTCCCTAACTGATGTGTTCCAGAGGCTGGTTTATAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGACTGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCCACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTATCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCtggtgca < 2:274490/273‑3 (MQ=255) ccAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCTTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGATTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTg < 1:587960/275‑1 (MQ=255) ttATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTGAacac < 1:127664/275‑1 (MQ=255) gcgagagggTGTATAAGGTCCTGAACTGATGTGATCCAGATGCTGGGTGACAATCGTATAATTGCCTGATGCGCTTCGCGTATTAGGACTACATAAGGCATTGCAACTGCTTGACTGCTTGGGAAGTTGGAGGCCGGATAAGGCTATTACGCCGCACACGGCATTAACACCGATCACGTTATCAGGCATTTCAGGCTGGATGGCTCCAGTCTCGCATTAGCAAAGATGAGACTATTTCGCCTGTGGTGCAGTGTTGCTGGTGGATTGAACACGt < 2:210381/267‑1 (MQ=255) agnTCAGTNNNNTAAGTGCCCGAGCGGATGTTGTCCAGAGGCGGGGTGAAAAACGGATAATTGCCTGATGCGCTTCGCGTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTGAACACGt < 2:51424/272‑1 (MQ=255) aGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTGAac > 1:51424/1‑264 (MQ=255) ttATAAGTGCACGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTGAACACGTAAGTGATGCa < 1:62365/274‑1 (MQ=255) gCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGTTTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCCTCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCCGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTTCTGGTGGATTGAac > 1:210385/1‑252 (MQ=255) cccGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa > 2:707875/1‑144 (MQ=255) taaCTGATTTGAGTNTGATGCTGGGTGACAATCTTTTACTTTCCTGTTGTGGTTCGCTTATACGGCATACATAAAGCTTTGCAACTGAGTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGACATTTCATGCTGGATTGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTGAACACGTAAGTGATGCAGCGCGCGTAAGCa < 2:518092/274‑1 (MQ=255) tatggtgttgAGCCATATGCTGTGTGACAAACTTATAATTTCCTGTTTCGCTTCTCTTATCTGGCCTACATTAGGCATTGCAACTGATTGTATTCTTGAGAATTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGTCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTGAACACGTAAGTGATGCAGCGCGCGTAAGCa < 2:237486/266‑1 (MQ=255) aaCTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAc < 1:707885/144‑1 (MQ=255) tCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATc > 2:9349/1‑50 (MQ=255) ggggCAGGGTTACAAAAGTATAATTGCCTGTGGCGCTTCTCTTATCTAGCCTACATTAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTGAACACGTAAGTGATGCAGCGCGCGTAAGCATTGATCCTGGGTTAg < 2:224892/272‑1 (MQ=255) gagGCTGGGTGACAAACGTATAATTGCCTGATTcgcta < 2:320959/38‑2 (MQ=255) gagGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATc > 1:388109/1‑46 (MQ=255) gagGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGc < 1:9349/50‑1 (MQ=255) gagGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCCTCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCNAAGATGAGNTTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTGAACACGTAAGTGATGCAGCGCGCGTAAGCATTGATCCTGGGTTAg > 1:477367/1‑274 (MQ=255) gagGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCaa > 1:685407/1‑132 (MQ=255) gagGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTAATTCGCCTGTGGTGCCAGTTTGCTGGGGGATTGAACAAGTAAGTGATGGAGCGCGCGTAAGCATTGATCCGGGGtgatc > 2:720712/1‑271 (MQ=255) gagGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCCTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa > 2:633868/1‑125 (MQ=255) cTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGc < 2:388103/46‑1 (MQ=255) cTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGAt < 2:685398/132‑1 (MQ=255) cTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCCTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAc < 1:633877/125‑1 (MQ=255) tGGGTGACAAACGTATAATCGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTGAACACGTAAGTGATGAAGCGCGCGTAAGCATTGATCCTGGGTTAGCGGtt > 1:574586/1‑274 (MQ=255) ggTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGAt > 1:307102/1‑220 (MQ=255) ggTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGAATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTTCAGTTTTGCTGGTTGATTGAACACGTAAGTTATGCAGCTCGCGTaa > 1:232000/1‑249 (MQ=255) gTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTGAACACGTAAGTGATGCAGCGCGCGTAAGCATTGATCCTGGGTTAGCGGTTggg > 1:299683/1‑274 (MQ=255) aaaaaaGTAAAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTGGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTGaa < 2:307096/218‑1 (MQ=255) gTATAATTGCCTGATGCTCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTGAACACGTAAGTGATGCAGCGCGCGTAAGCATTGATCCTGGGTTAGCGGTTGAGCGTTATTcg < 1:720722/274‑1 (MQ=255) tataATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTACAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCtgt > 1:581428/1‑188 (MQ=255) aTTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTgtggtg < 2:581419/188‑1 (MQ=255) ccTGATTCGCTACGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCCAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTGAACACGTAAGTGATGCAGCGCGCGTACGCATTGATCCTGGGTTAGCGGTTGGGCGTTATTCGCCGCTAc > 1:48475/1‑272 (MQ=255) cTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTAcgct > 1:724376/1‑87 (MQ=255) tGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTTAGAATTTGTAGGCCGGATAAGGCGTTTACGCTGCAt < 2:724366/88‑1 (MQ=255) tGCGCTACGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGtt > 2:708559/1‑78 (MQ=255) | GTACTGCGACAGGTAAGCAAAGCAACTGGCTTTCCGGGCAACACGGAGAAGAAGGCGGTTCTATGCGCGGCGCAGCAAACGATCTGCGCAACCAGGCGGCTGCAATGGGCGGTAACGTGATTTATGGCATCAGTAGCCCGTCGCAGGGAATGTTGTCCAGTTTTGTCCCGACGGATAGCCAGATTATCGGTCAGGTTTATAAGTGCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTGAACACGTAAGTGATGCAGCGCGCGTAAGCATTGATCCTGGGTTAGCGGTTGGGCGTTATTCGCCGCTAC > CP009273/4362765‑4363286 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |