Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC CP009273 981,963 IS1 (+) +9 bp 100% coding (468‑476/1089 nt) ompF ← outer membrane porin 1a (Ia;b;F)

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 19796 =NA (NA)31 (1.200) 27/268 NT 100% noncoding (768/768 nt) IS1 repeat region
?CP009273 981963 = 0 (0.000)coding (476/1089 nt) ompF outer membrane porin 1a (Ia;b;F)
* ? CP009273 = 20563NA (NA)38 (1.470) 33/268 NT 100% noncoding (1/768 nt) IS1 repeat region
?CP009273 = 981971 0 (0.000)coding (468/1089 nt) ompF outer membrane porin 1a (Ia;b;F)

CTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/20050‑19796
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCTGTATGCAGTATCACCACCAAATTCTGGCAGCATATCGGTGTAACCCAGTGCATCATAAACCACACCGTAGTTACGGCCGTAATCGAAAGAACCAACGTCAGCGTATTTAAGACCCGCGAATGCCAG  >  CP009273/981963‑982126
                                                                                                                                                                                                                                                                                                                                                                                                                                   
CTGCTGTCTCTCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAAACCCGCCTGAAGGGAAAGCTGCACNTAATCAGCNAGCGATATACGCAGCGAATTGAGCGGCATAATCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAGGTTGGAGGCATTACCGCAACGCCGCCAACACGAC                                                                                                                                                   <  1:340202/274‑1
  GCTGTCACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCAACGCCGCCAACACGACCA                                                                                                                                                 >  1:71323/1‑274
              gcgCGTGGTGTTATGGAGGGCGGAGGGCTGGCCGCTGTATGAATCCCGCCTGAAGGTAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCA                                                                                                                                     <  2:71323/271‑1
                                                                    GGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCAACGCCGC                                                                                                                                                            >  2:28637/1‑197
                                                                        AAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCAACGCCGCCAAC                                                                                                                                                        <  1:28637/197‑1
                                                                                                       AGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTACCTGAACATAAAACACTATCAATAAGGTGGAGTCATTACCGCAACGCCGCCAACACAACCAACGAAGAAGTCATCGCTGTATGCAGTATCACCACCAAATTCTGGCAGCATATCGGTGTAACCAAGAGCACAATAAACAAAACCGTAGTTACGGCCAAAATC                                            >  1:8812/1‑274
                                                                                                                                                                                        TGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCAAC                                                                                                                                                                 >  1:137422/1‑76
                                                                                                                                                                                            GCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCAACGCCG                                                                                                                                                             <  2:137421/76‑1
                                                                                                                                                                                                CATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCTGTATGCAGTATCACCACCAAATTCTGGCAGCATATCGGTGTAACCC                                                                                  >  2:65330/1‑147
                                                                                                                                                                                                    ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCTGTATGCAGTATCACCACCAAATTCTGGCAGCATATCGGTGTAACCCAGTG                                                                              <  1:65330/147‑1
                                                                                                                                                                                                       AAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCAACGCCGCCAACACG                                                                                                                                                     >  1:486779/1‑73
                                                                                                                                                                                                          TCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCTGTA                                                                                                                             >  2:397531/1‑94
                                                                                                                                                                                                           CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCAACGCCGCCAACACGACCA                                                                                                                                                 <  2:486770/73‑1
                                                                                                                                                                                                              CGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCTGTATGCA                                                                                                                         <  1:397540/94‑1
                                                                                                                                                                                                                                     ACTATCAATAAGTTGGAGTCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCTGTATGCA                                                                                                                         >  1:516978/1‑71
                                                                                                                                                                                                                                       TATCAATAAGTTGGAGTCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCTGTATGCAGTATCACCACCAAATTCTGGCAGCATATCGGTGTAACCCAGTGCATCATAAACCACACCGTAGTTACGGCCGTAATC                                            >  2:492548/1‑146
                                                                                                                                                                                                                                       TATCAATAAGTTGGAGTCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCTGTATGCAGTATCACCACCAAATTCTGGCAGCATATCGGTGT                                                                                       >  2:41353/1‑103
                                                                                                                                                                                                                                        ATCAATAAGTTGGAGTCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCTGTATGCAGTATCACCACCAAATTCTGGCAGC                                                                                                 >  2:273190/1‑92
                                                                                                                                                                                                                                         TCAATAAGTTGGAGTCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCTGTATGCAGTAT                                                                                                                     <  2:516968/71‑1
                                                                                                                                                                                                                                           AATAAGTTGGAGTCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCTGTATGCAGTATCACCACCAAATTCTGGCAGCATATCGGTGTAACC                                                                                   <  1:41353/103‑1
                                                                                                                                                                                                                                           AATAAGTTGGAGTCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCTGTATGCAGTATCACCACCAAATTCTGGCAGCATATCGGTGGAACCCAGTGCATCATAAACCACACCGTAGTTACGGCCGTAATCGAAA                                        <  1:492557/146‑1
                                                                                                                                                                                                                                            ATAAGTTGGAGTCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCTGTATGCAGTATCACCACCAAATTCTGGCAGCATAT                                                                                             <  1:273194/92‑1
                                                                                                                                                                                                                                             TAAGTTGGAGTCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCTGTATGCAGTATCACCAC                                                                                                               >  2:310290/1‑73
                                                                                                                                                                                                                                                 TTGGAGTCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCTGTATGCAGTATCACCACCAAATTCTGGCAGCATATCGGTGTAACCCAGTGCATCATAAACCACACCGTAGTTACGGCCGTAATCGAAAGAACCAACGTCAGCGTATTTAAGACCCGCGAATG      >  2:67554/1‑174
                                                                                                                                                                                                                                                 TTGGAGTCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTAATCGCTGTATGCAGTATCACCACCAAA                                                                                                           <  1:310294/73‑1
                                                                                                                                                                                                                                                   GGAGTCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCTGTATGCAGTATCACCACCAAATTCTGGCAGCATATCGGTGTAACCCAGTGCATCATAAACCACACCGTAGTTACGGCCGTAATCGAAAGAACCAACGTCAGCGTATTTAAGACC              >  2:278255/1‑164
                                                                                                                                                                                                                                                   GGAGTCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCTGTATGCAGTATCACCACCAAATTCTGGCAGC                                                                                                 >  2:430261/1‑81
                                                                                                                                                                                                                                                   GGAGTCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCAT                                                                                                                                    >  1:176402/1‑46
                                                                                                                                                                                                                                                     AGTCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCTGTATGCAGTATCACCACCAAATTCTGGCAGCATATCGGTGTAACCCAGTGCATCATAAACCACACCGTAGTTACGGCCGTAATCGAAAGAACCAACGTCAGCGTATTTAAGACCCGCGAATGCCAG  <  1:67554/174‑1
                                                                                                                                                                                                                                                       TCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCTGTATGCAGTATCACCACCAAATTCTGGCAGCATATCGGTGTAACCCAGTGCATCATAAACCACACCGTAGTTACGGCCGTAATCGAAAGAACCAACGTCAGCGTATTTAAGACCCGCG          <  1:278259/164‑1
                                                                                                                                                                                                                                                       TCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCTGTATGCAGTATCACCACCAAATTCTGGCAGCATAT                                                                                             <  1:430270/81‑1
                                                                                                                                                                                                                                                       TCATTACCGCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCT                                                                                                                                <  2:176399/46‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                   
CTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/20050‑19796
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAACGCCGCCAACACGACCAACGAAGAAGTCATCGCTGTATGCAGTATCACCACCAAATTCTGGCAGCATATCGGTGTAACCCAGTGCATCATAAACCACACCGTAGTTACGGCCGTAATCGAAAGAACCAACGTCAGCGTATTTAAGACCCGCGAATGCCAG  >  CP009273/981963‑982126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.