New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	19796 =	NA (NA)	143 (5.530)	78/268	NT	85.6%	noncoding (768/768 nt)	IS1	repeat region
	?	CP009273	4317405 =	24 (0.930)					coding (454/2229 nt)	crfC	clamp‑binding sister replication fork colocalization protein, dynamin‑related

CAGCTCCCCCAAAGTTAAGGTGGGGGAGATAGATTAGTTGTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCAC  >  CP009273/19625‑20029                                                                                                                                                                            |                                                                                                                                                                                                                                          cAGCTCCCCCAAAGTTAAGGTGGGGGAGATAGATTAGTTGTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGAATTTGTCATGCAGATCCACCGCTTTTGAGAACGACAGCGACTTcctttct                                                                                                                                     >  2:499298/1‑269 (MQ=255)     tcacccAAAGTTAAGGTGGGGGAGATAGATTAGTTGTACATTACCACGATTTTGACTAGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCACATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACg                                                                                                                                                      <  1:499307/250‑1 (MQ=255)                                       tGTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTAtt                                                                                                                                                                                                                        >  1:25575/1‑153 (MQ=255)                                           cATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATa                                                                                                                                                                                                                    <  2:25575/153‑1 (MQ=255)                                           cATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAgtg                                                                                                                                                                                                                 >  2:217168/1‑156 (MQ=255)                                           cATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                                                                                                                                                                         >  2:292484/1‑180 (MQ=255)                                               actaCGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt                                                                                                                                                                                     <  1:292488/177‑1 (MQ=255)                                               aCCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGtttt                                                                                                                                                                                                             <  1:217171/156‑1 (MQ=255)                                                                     ttattTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCg                                                                                                                                                                                           >  2:486984/1‑152 (MQ=255)                                                                         ttGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGa                                                                                                                                                                                       <  1:486993/152‑1 (MQ=255)                                                                                          tGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTTCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCAGCCCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAg                                            >  1:496426/1‑274 (MQ=255)                                                                                                        cgcgGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTACCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAg                             >  1:269887/1‑275 (MQ=255)                                                                                                            ggCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGGGCAGCTTTCCCTTCAGGCGGGCTTCCTACAGCgg                          >  2:222013/1‑274 (MQ=255)                                                                                                                aataaataGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCGGCCGTGCCAGGTGCTGCCTNAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGgccagc                     >  1:404868/1‑275 (MQ=255)                                                                                                                  aaaataGAGGAATTTTATTTCTTCCTTCGTGGGGGTGCTGTATAGAGGAGTAATGGCTGTTACTGATTTCAACTTATTTAGAGTGTTTTATGTTCAGATAATGCCCGCAGACTTTGTCAGGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGgccagcc                    <  2:258908/273‑1 (MQ=14)                                                                                                                       agagGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTgg                                                                                                                                                                                                                                          >  1:254231/1‑55 (MQ=255)                                                                                                                           gAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAAt                                                                                                                                                                                                                                      <  2:254227/55‑1 (MQ=255)                                                                                                                              tCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGa                                                                                                                                                                                                                                    >  2:52068/1‑54 (MQ=255)                                                                                                                              tCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTc                                                                                                                                       >  1:10940/1‑147 (MQ=255)                                                                                                                                  aTTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTcc                                                                                                                                                                                                                                <  1:52068/54‑1 (MQ=255)                                                                                                                                  aTTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAg                                                                                                                                   <  2:10940/147‑1 (MQ=255)                                                                                                                                   ttaataaataaaTGGGGATGCTGAAATTAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATcac  <  2:404859/264‑1 (MQ=255)                                                                                                                                          cttcATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTa                                                                                                                                                                                                            >  1:513102/1‑66 (MQ=255)                                                                                                                                            tcATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAgt                                                                                                                                                                                                                  >  2:149487/1‑58 (MQ=255)                                                                                                                                              aTGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt                                                                                                                                                                                                        <  2:513093/66‑1 (MQ=255)                                                                                                                                                ggggATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAAc                                                                                                                                                                                                                             >  2:92024/1‑43 (MQ=255)                                                                                                                                                ggggATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGttt                                                                                                                                                                                                              <  1:149488/58‑1 (MQ=255)                                                                                                                                                   gATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTa                                                                                                                                                                                                            >  1:467451/1‑57 (MQ=255)                                                                                                                                                    aTGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTAt                                                                                                                                                                                                                         <  1:92024/43‑1 (MQ=255)                                                                                                                                                       cTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt                                                                                                                                                                                                        <  2:467442/57‑1 (MQ=255)                                                                                                                                                               agtagtAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCa                                                                                                               >  1:170880/1‑138 (MQ=40)                                                                                                                                                               agtagtAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAAt                                                                                         >  1:214491/1‑160 (MQ=39)                                                                                                                                                                 tagtaATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAAtt                                                                                        >  2:468781/1‑159 (MQ=38)                                                                                                                                                                 tagtaAGTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTc                                              >  2:301925/1‑201 (MQ=18)                                                                                                                                                                   gtaATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCTTCAGAtt                                                                                                           <  2:170878/138‑1 (MQ=37)                                                                                                                                                                   gtaATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGc                                                                                     <  2:214488/160‑1 (MQ=35)                                                                                                                                                                    taATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                                                                                                                                                                         >  1:387306/1‑59 (MQ=255)                                                                                                                                                                     aaTTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCt                                                                                    <  1:468790/159‑1 (MQ=34)                                                                                                                                                                     aaTTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGc                                          <  1:301929/201‑1 (MQ=33)                                                                                                                                                                        tGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt                                                                                                                                                                                     <  2:387298/59‑1 (MQ=38)                                                                                                                                                                            |                                                                                                                                                                                                                                          CAGCTCCCCCAAAGTTAAGGTGGGGGAGATAGATTAGTTGTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCAC  >  CP009273/19625‑20029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.