New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	14 (0.540)	25 (0.970)	23/268	NT	68.5%	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	9 (0.350)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

TTTTCCGCCAGACGCCACTGCTGCCAGGCGCTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATG  >  CP009273/359840‑360350                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                       gccagcggcttaccatccagcgccaccatccagtgcaggagctccgatgataagctgtcaaacatgagaattccgatccccaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggctttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGgcc                                                                                                                                                                                                                                              <  1:194086‑M1/11‑2 (MQ=255)                       agaccacnccgtccaggagctccgtggatcacctgtcaaaacgcagacttccgacccccatttcctggcagtttatggcgggcgtcctgaccgccacccaccgggccgttgctacgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGc                                                                                                                                                                                                                          >  2:194083‑M1/243‑273 (MQ=255)                             cgcTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGATTACCATCCAGCGCCACCATCCAGTGAAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCCATTCCTGGCAGTTTATGGCGGGCATCCTGCCC‑CCAcc                                                                                                                                                                                                                  >  2:445774/1‑274 (MQ=255)                                                 gatacgctgtcaaacatgagaattccgatccccaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcntactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCa                                                                                                                                                                                              >  1:445783‑M1/217‑275 (MQ=255)                                                       ctgtcaaacatgagaattccgatccccaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttaatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTCCCACCCCCCCTCCGGGCCGGTGCTTCTcaacctt                                                                                                                                                                                         <  1:641‑M1/64‑4 (MQ=255)                                                                          aagagccagcTGTGAGCCAGAGTTGCCCTGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGGACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAt                                                                                                                                                                     <  1:271631/266‑1 (MQ=255)                                                                               cgTACTGTGGGCCAGCGTGGCCCGGCGCTCTCCGGCTGCGGTAGTGCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc                                                                                                                                                                <  1:17673/275‑1 (MQ=255)                                                                                  aCTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGATCAAATACGCTCCcggcctgtcccttat                                                                                                                                                              >  1:325976/1‑263 (MQ=255)                                                                                                                                                ttcaaatccgctcccggcggatttgtcctactcacgcgagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattaatt                                                                                                                                                                                                                                                     <  1:249254‑M1/4‑1 (MQ=255)                                                                                                                                                           tcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGcc                                                                                                                                                                                                                         <  1:445769‑M1/32‑1 (MQ=255)                                                                                                                                                               ggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGcc                                                                                                                                                                                                                     >  2:445760‑M1/107‑142 (MQ=255)                                                                                                                                                                       tgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTc                                                                                                                                                                                                                                                    <  2:72423‑M1/5‑1 (MQ=255)                                                                                                                                                                           ctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTgg                                                                                                                                                                                                                                                >  1:72423‑M1/95‑103 (MQ=255)                                                                                                                                                                                      agcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgcgcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTTCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTc                                                                                                                                                                              <  1:99819‑M1/75‑1 (MQ=255)                                                                                                                                                                                        gCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGCTTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcc                                                       <  1:194086‑M2/275‑12 (MQ=255)                                                                                                                                                                                        gCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCAGCCCCCGGCGGAGTTGTCCTACTCAGGagag                                                                                                                                                   >  2:165203/1‑183 (MQ=255)                                                                                                                                                                                        cgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCtt                                                                                                                                                                                                  <  1:132632‑M1/55‑1 (MQ=255)                                                                                                                                                                                          ttcaccgacaaacaacagatagaacgaaaggcccaatctttcgactgagcctttggttttatttggtgcccggggaagtAGTTCCTGGCAGTTTAAGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTGACATCCGCTCCcgg                                                                                                                                                                          >  2:99819‑M1/80‑158 (MQ=255)                                                                                                                                                                                            gCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGtt                                                                                                                                               <  1:165204/183‑1 (MQ=255)                                                                                                                                                                                            caccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCa                                                                                                                                                                                              >  2:132631‑M1/78‑136 (MQ=255)                                                                                                                                                                                                gacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCCTCCTGCCCCCCCCCCTCCGGGCCGTTGCTTCGCAACATTCAAATCCCCTCCCGGCGGAtt                                                                                                                                                                    <  2:320980‑M1/85‑1 (MQ=255)                                                                                                                                                                                                  tACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt                                                                                                                                                                                    >  1:140900/1‑140 (MQ=255)                                                                                                                                                                                                   aCCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCCCCCTCCGGGCCGGTGCTTCCCCACGGTCAAATCCGCTCCCGGCGGATTTGTcc                                                                                                                                                               >  2:233700/1‑160 (MQ=255)                                                                                                                                                                                                    aacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc                                                                                                                                                                >  1:320985‑M1/70‑158 (MQ=255)                                                                                                                                                                                                      aTCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGc                                                                                                                                                                                <  2:140899/140‑1 (MQ=255)                                                                                                                                                                                                       tCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACt                                                                                                                                                           <  1:233703/160‑1 (MQ=255)                                                                                                                                                                                                         cagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc                                                                                                                                                                         <  1:74631‑M1/80‑1 (MQ=255)                                                                                                                                                                                                             taaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAt                                                                                                                                                                     >  2:74631‑M1/61‑144 (MQ=255)                                                                                                                                                                                                              agaccacnCCGTCCAGGAGCTCCGTGGATCACCTGTCAAAACGCAGACTTCCGACCCCCATTTCCTGGCAGTTTATGGCGGGCGTCCTGACCGCCACCCACCGGGCCGTTGCTACGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgc                                   >  2:194083‑M2/3‑242 (MQ=255)                                                                                                                                                                                                                 acgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGa                                                                                                 <  2:32664‑M1/152‑1 (MQ=255)                                                                                                                                                                                                                     aaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt                                                                                             >  1:32664‑M1/53‑208 (MQ=255)                                                                                                                                                                                                                              gAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTcc                                                                                                                                                                                                              >  1:163712/1‑86 (MQ=255)                                                                                                                                                                                                                                  tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGc                                                                                                                                                                                                          <  2:163711/86‑1 (MQ=255)                                                                                                                                                                                                                                   cgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCg                                                                                                                                                                                                             <  2:151498‑M1/44‑1 (MQ=255)                                                                                                                                                                                                                                   ccGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAg                                                                                                                   >  1:81135/1‑172 (MQ=255)                                                                                                                                                                                                                                       tgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGccc                                                                                                               <  2:81135/172‑1 (MQ=255)                                                                                                                                                                                                                                       tgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGcc                                                                                                                                                                                                         >  1:151499‑M1/35‑82 (MQ=255)                                                                                                                                                                                                                                        gatACGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCNTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgca       >  1:445783‑M2/1‑216 (MQ=255)                                                                                                                                                                                                                                        gagcctttcgttttatttgatgcctggggaattaatt                                                                                                                                                                                                                                                     <  1:287072‑M1/4‑1 (MQ=255)                                                                                                                                                                                                                                        gagcctttcgttttatttgatgcctggggaattAATTc                                                                                                                                                                                                                                                    <  2:98919‑M1/5‑1 (MQ=255)                                                                                                                                                                                                                                        gagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc                                                                                                                                                               <  1:7878‑M1/90‑1 (MQ=255)                                                                                                                                                                                                                                         agcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATg                                                                                                                                                                                                                                       <  2:297640‑M1/18‑1 (MQ=255)                                                                                                                                                                                                                                            ctttcgttttatttgatgcctggggaattAATTCCTgg                                                                                                                                                                                                                                                >  1:98919‑M1/30‑38 (MQ=255)                                                                                                                                                                                                                                            ctttcgttttatttgatgcctggggaattAATTCCTg                                                                                                                                                                                                                                                 >  2:287068‑M1/30‑37 (MQ=255)                                                                                                                                                                                                                                            ctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACt                                                                                                                                                           >  2:7878‑M1/30‑123 (MQ=255)                                                                                                                                                                                                                                             tttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcgg                                                                                                                                                                                                                                   >  1:297644‑M1/29‑50 (MQ=255)                                                                                                                                                                                                                                              cTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTAATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctcccaccccccctccgggccggtgcttctcaacctt  <  1:641‑M2/274‑65 (MQ=255)                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                       TTTTCCGCCAGACGCCACTGCTGCCAGGCGCTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATG  >  CP009273/359840‑360350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.