New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | = 20563 | NA (NA) | 9 (0.350) | 9/266 | NT | 90.1% | noncoding (1/768 nt) | IS1 | repeat region |
? | CP009273 | 1503915 = | 1 (0.040) | noncoding (755/1748 nt) | IS609 | repeat region |
GTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAATGACATGCGAGAGACAGTCGAAATTATGCGTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATAACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCACGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAGGTATTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGTTAGCCAGGCGAATTGGCAAACCTAAACAGGAGATTACTCGCCTATTTAACTTGCATCATGCGACAAAAATCGACGCCGTCCAGCTCGCGGCAAAGGCGCTTGGCAAAGAGTTATCGCTGGTGATGG > CP009273/1503642‑1504176 | ataatgcgggctgttgcccggcatccaacgccattcatggccatatcaatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgctgttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacct > 1:465430‑M2/274‑274 (MQ=255) aagagtaaaaagcgCGATGACCTTTGAGAACCATTGCGTAAAGAAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAATGACATGCGAGAGACAGTCGAAATTATGCGTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAg < 2:409393/261‑1 (MQ=255) ttgcccggcatccaacgccattcatggccatatcaatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggccgtgagtgcagagatagcgctgatgtccgtcggtgcttttgccgttacgccccaccccgtcattagctgaccaggagggaccgctgctacaaacagaagcacctgtagcacctcaaaaccaccaccatacactaaaaccgaaacttggcaacaccaccttttantctaatcag > 2:191423‑M2/261‑263 (MQ=255) atgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccaatggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTTGAAGATAACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCACGAACACTTAATTGAAGTACCTTGGAGCGTCGCCTCTAAGGTAGTGCtgttaaagtat > 2:144331‑M2/171‑271 (MQ=255) gcagagatggcgctgatgtccggcggtgcttttgccgttacgcaacaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTTGAAGATAACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCACGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAGGTATTGCTGTTAAATGCTTTTTTACAGTCAGAAATCa < 1:191426‑M2/124‑1 (MQ=255) gcgcCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATggtaatgactccaac > 1:403248‑M1/1‑132 (MQ=255) cGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATggtaatgactccaacttat < 2:403239‑M1/147‑20 (MQ=255) tgGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGATTTACTGACCGCATTTGATTTTTATTTTGAAGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgcaagatgctgcctcagattcagtttatgccgctcaattggatgcgtatatcgcttgcgtaacac > 2:153125‑M1/1‑101 (MQ=255) tGAAGCGTTGACCCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATggtaat > 2:43988‑M1/1‑91 (MQ=255) gCGTTGACCCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATggtaatgact < 1:43988‑M1/97‑11 (MQ=255) ttGACCCAGTGCAAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTCTTTTGACGCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcccccgattttgagaacgacagcgacttccttaccagccgtgcaaggtgctgcctcagatccaagttatgacgctccattcactgcgtatatagctttctccctacgttcgtatttcccttca > 2:108837‑M1/1‑84 (MQ=255) ttGACCCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcatctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctccgattcaggttatgccgctcaattcgctgcgtctatcgcttgctgattacgtgcacctttcccttca > 1:40451‑M1/1‑84 (MQ=255) ttGACCCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgttaagctttcccttca > 1:19426‑M1/1‑84 (MQ=255) tGACCCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttcttgattacgtccatctttcccttc > 2:363748‑M1/1‑83 (MQ=255) gggCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgct > 1:50326‑M1/1‑76 (MQ=255) gggCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgac > 1:232278‑M1/1‑76 (MQ=255) cagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTTGAAGATAACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCACg > 1:404875‑M2/66‑114 (MQ=255) gAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcct < 2:50326‑M1/195‑124 (MQ=255) gAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttg < 2:232275‑M1/130‑59 (MQ=255) aaaCTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccagg > 1:40540‑M1/1‑71 (MQ=255) agccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTTGAAGATAACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCACGATCa < 2:404866‑M2/53‑1 (MQ=255) tGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgct < 2:40540‑M1/186‑120 (MQ=255) gTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGTAGATggtaatgactccaacatattgat < 2:100674‑M1/89‑24 (MQ=255) gCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctca > 1:126895‑M1/1‑45 (MQ=255) aaGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagatt < 2:126894‑M1/170‑130 (MQ=255) ttACTGACCGCATTTGATTTTTATTTTGAAGATggtaatgactccaacttattgatagtgtttta > 1:316883‑M1/1‑33 (MQ=255) aatcagtaagttggcagcatcaccTTTGAAGATAACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCACGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAGGTATTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCaa > 2:292478‑M2/25‑156 (MQ=255) tACTGACCGCATTTGATTTTTATTTTGAAGATggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatccatatcaccacgtcaa < 1:153126‑M1/274‑243 (MQ=255) tttcnnnnttttgatttttntTTTGGAAATggtaatgatcccacctttgtgttgtttttttttgttcagataatgcccgatgactttgtcatgcagctccacccattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatccatatcaccacgt < 2:19426‑M1/260‑240 (MQ=255) tGACCGCATTTGATTTTTATTTTGAAGATggtaatgactccaacttattgatagtgttttatgtt < 2:316878‑M1/65‑37 (MQ=255) agtaagttggcagcatcaccTTTGAAGATAACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCACGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAGGTATTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGt < 1:292482‑M2/136‑1 (MQ=255) ttggcagcatcaccTTTGAAGATAACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCACGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAGGTATTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGTTAGCCAGGCGAATTGGCAAACCTAAAc > 1:453036‑M2/15‑177 (MQ=255) ggcagcatcaccTTTGAAGATAACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCACGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAGGTATTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGTTAGCCAGGCGAATTGACAAACCTAAACAGGAGATTNCTCGCCTATTTAACTTGCATCATGCGACAAAAATCGACGCCGTCCAGCTCGCGGCAAAGGCGCTTGGAAAAGAGTTAACGCTGGTGATgg > 1:398444‑M2/13‑274 (MQ=255) cagcatcaccTTTGAAGATAACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCACGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAGGTATTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGTTAGCCAGGCGAATTGGCAAACCTAAACAGga < 2:453027‑M2/167‑1 (MQ=255) | GTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAATGACATGCGAGAGACAGTCGAAATTATGCGTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATAACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCACGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAGGTATTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGTTAGCCAGGCGAATTGGCAAACCTAAACAGGAGATTACTCGCCTATTTAACTTGCATCATGCGACAAAAATCGACGCCGTCCAGCTCGCGGCAAAGGCGCTTGGCAAAGAGTTATCGCTGGTGATGG > CP009273/1503642‑1504176 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |