Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009273 3900139 3900185 47 2 [1] [1] 2 bglG/phoU transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator

TTGATAAAAATATGACCATGCTCGCAGTTATTAACTTTGTGT  >  CP009273/3900101‑3900142
                                     |    
ttGATAAAAATATGACCATGCTCGCAGTTATTAACttt      >  1:292381/1‑38 (MQ=255)
    tAAAAATATGACCATGCTCGCAGTTATTAACTTTgtgt  <  2:292377/38‑1 (MQ=255)
                                     |    
TTGATAAAAATATGACCATGCTCGCAGTTATTAACTTTGTGT  >  CP009273/3900101‑3900142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: