New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1203261	38 (0.860)	13 (0.330)	13/270	NT	30.6%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	CP009273	= 1205058	25 (0.630)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

ATAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTG‑ACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGGCAACGGGGGGATATACAACCACTTCGTTTTTATTA  >  CP009273/1202991‑1203529                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                             gtAAGTTCGGCGCGGGTAAGAACGGTTTTATCCGTGGTAACCCCCAGACCGGCACTCCTGCCACCGATCTGGATGATGAGTACTTTG‑ACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGAACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGTAGAAGGAGCa                                                                                                                                                                                                                                                                          <  1:816552/274‑1 (MQ=255)               ggTAAGAACGGTTTTACCCAGGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTG‑ACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgca                                                                                                                                                                                                                                                              <  1:438914/273‑1 (MQ=255)                     aaCGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTG‑ACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc                                                                                                                                                                                                                                                      <  1:472812/275‑1 (MQ=255)                                          ctgtcgagcGGGACGACTGCCACGGATCTGGATGATGACTACTTTG‑ACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGAACCGGttt                                                                                                                                                                                                                                 <  2:258114/267‑1 (MQ=255)                                                 tttttttcagtcccggcctttcggactttgtgccgcttagcttgtcttcaaaaatcagctcgcatcctgcacagttcagcgcagtacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttcaatccccctggtaaaagcaggattgatgccatttgcttgttatttcttcattttcctaaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg                                                                                                                                                                                                                            >  1:360350‑M1/209‑274 (MQ=255)                                                    gCACGCCTGCCACCGATCTGGATGATGACTACTTTG‑ACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattaactgttggtgtcccggttcggtggcgttcagcccctccgccccc                                                                                                                                                                                                                        >  2:183981‑M1/1‑220 (MQ=255)                                                        gCCTGCCACCGTTCTGGATGATGACTACTTTG‑ACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCCGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggct                                                                                                                                                                                                                   <  1:499827‑M1/275‑60 (MQ=255)                                                            gCCACCGATCTGGATGATGACTACTTTG‑ACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGATTCATAGCTATACCgtatat                                                                                                                                                                                                               >  1:646047/1‑270 (MQ=255)                                                                   aTCTGGATGATGACTACTTTG‑ACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGNCCAGTTACTTACCGCACTTTGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtgg                                                                                                                                                                                                         <  1:622938/274‑1 (MQ=255)                                                                      tGGATGATG‑CTTGTTTGTACCTGTGGCAGCAGGAAGTTTGCAGCGTGGTGGCGCTATCCCGAGCCAGCCTTGAGCAGTAGCGGAACGACCAGTTACTTACCGCACTTCGCGCGCTTCTGTTAATCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCAGTGTGCAAACGGCTCTAGAAAACCTTGGTTTGGGAGAAGGAGAAAATCTCAATGCAGCAACGGCTACATTCGGACGCACCGGTTTCATAGCTATACCGGTTATGATTggtggt                                                                                                                                                                                                     <  2:32000/275‑1 (MQ=21)                                                                                   ctTTG‑ACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgcttttt                                                                                                                                                                                        <  1:183984‑M1/275‑87 (MQ=255)                                                                                             gTTGCATGAGGACTTTTGCTGTGTGGTGTAGGCATCCGGTGCCAGCCTGGAGAAGGGGCTGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCTATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCAtt                                                                                                                                                                                <  1:85916/274‑1 (MQ=255)                                                                                                    gaggaACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtccaggttccgtggccttcagccactccgccaacaggcgggctgaaat                                                                                                                                                                                                          >  2:573471‑M1/1‑173 (MQ=255)                                                                                                        aaCTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGACGGGGCGTCACGACCNGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagctactccgccaacagcctggctgaaatgcaa                                                                                                                                                                                                      <  1:573476‑M1/241‑73 (MQ=255)                                                                                                                              aTCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaa                                                                                                                                                                                                                         >  2:161822‑M1/1‑147 (MQ=255)                                                                                                                                 cGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgc                                                                                                                                                                                                                                                               >  2:321637/1‑159 (MQ=255)                                                                                                                                  ggTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacagg                                                                                                                                                                                                                     <  1:161822‑M1/200‑58 (MQ=255)                                                                                                                                     gCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca                                                                                                                                                                                                                                                           <  1:321641/159‑1 (MQ=255)                                                                                                                                         gCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa                                                                                                                                                                                                                                                          >  1:275503/1‑156 (MQ=255)                                                                                                                                          ccTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTAGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggct                                                                                                                                                                                                               >  1:347147‑M1/1‑135 (MQ=255)                                                                                                                                          ccTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGANGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcct                                                                                                                                   <  1:626756‑M1/274‑140 (MQ=255)                                                                                                                                             ggAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc                                                                                                                                                                                                                                                      <  2:275499/156‑1 (MQ=255)                                                                                                                                              gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTAGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaa                                                                                                                                                                                                           <  2:347143‑M1/198‑68 (MQ=255)                                                                                                                                                    gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATTGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCACTGCAGCaa                                                                                                                                                                                                                                                          >  2:205127/1‑145 (MQ=255)                                                                                                                                                        ggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc                                                                                                                                                                                                                                                      >  1:266770/1‑145 (MQ=255)                                                                                                                                                         gcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCg                                                                                                                                                                                                                                     >  1:778507/1‑161 (MQ=255)                                                                                                                                                            cGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa                                                                                                                                                                                                                                                  <  2:266766/145‑1 (MQ=255)                                                                                                                                                             gACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt                                                                                                                                                                                                                                 <  2:778498/161‑1 (MQ=255)                                                                                                                                                                           cGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGATCAAAACTCAATGCAGCAACGGCTACATTCGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTTGTATTGAGCCATCAGTa                                                                                                                                                                                      >  2:34149/1‑190 (MQ=255)                                                                                                                                                                             cACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca                                                                                                                                                                                                                                                           >  2:271412/1‑119 (MQ=255)                                                                                                                                                                               ctgcgcgcgCTGCTGTTAAGCCGAAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTGTACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCa                                                                                                                                                                                  <  1:34149/187‑1 (MQ=255)                                                                                                                                                                                 tCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg                                                                                                                                                                                                                                                       <  1:271416/119‑1 (MQ=255)                                                                                                                                                                                    ccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa                                                                                                                                                                                                                <  1:356987‑M1/78‑1 (MQ=255)                                                                                                                                                                                        taagcatgttaaatcccccttgtaaaagcagggatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAt                                                                                                                                                                                                            >  2:356983‑M1/74‑155 (MQ=255)                                                                                                                                                                                                tttaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTGTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGGTTAATAATGCCTGTGTTGCCGttgttg                                                                            >  1:492880‑M1/66‑275 (MQ=255)                                                                                                                                                                                                  aaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg                                                                                                                                                                                                                                                                              >  1:85622‑M1/64‑79 (MQ=255)                                                                                                                                                                                                      cAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTa                                                                                                                                                                                                    >  2:760022/1‑149 (MQ=255)                                                                                                                                                                                                       aaGAATCCGTTTGGCGATATCAAAGCGGAGGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCtg                                                                                          <  1:444833/254‑1 (MQ=255)                                                                                                                                                                                                         cctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTa                                                                     <  1:322157‑M1/217‑1 (MQ=255)                                                                                                                                                                                                         cctggtaaaagcaggaatgatgccatatgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCNGCAAAAGCNTCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTAt                                                                    <  1:538052‑M1/218‑1 (MQ=255)                                                                                                                                                                                                          aaTCCGTTTGGCGCTATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                                                                                                                                                                <  1:760031/149‑1 (MQ=255)                                                                                                                                                                                                            tgtaaaagngggaatgagggcatttgcttgttatttcttcattttcataaacgTTGTGTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAAATTAGGACGAACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGAAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGAc                                                                 >  2:322153‑M1/54‑274 (MQ=255)                                                                                                                                                                                                                         atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAt                                                                                                                                                                                                   >  2:607447/1‑131 (MQ=255)                                                                                                                                                                                                                         atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCa                                                     <  1:270080/273‑1 (MQ=255)                                                                                                                                                                                                                          tCAAATCGGATGGCACTTTGTAAACGGCTCTCGAATACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACTGCTACATTAGGACTCACCGGTTTCATAGCTATAACGGTTATGNTTGGTGGTATTGGGCAATCAGTAATCATTCAGTGGTGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCa                                                     <  1:701384/272‑1 (MQ=255)                                                                                                                                                                                                                             aaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAg                                                                                                                                                                                               <  1:607452/131‑1 (MQ=255)                                                                                                                                                                                                                                    tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTccc                                                                                                               >  2:162869/1‑204 (MQ=255)                                                                                                                                                                                                                                        aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGtt                                                                                                           <  1:162869/204‑1 (MQ=255)                                                                                                                                                                                                                                          ttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCACAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGACTGCCGCAAAAGCAGCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGAGTTGCAGTTGTTGCAAATTATGACAAGGTAAGCGAACCTCTCAATGCCGTGCCaa                                  <  2:255641‑M1/252‑1 (MQ=255)                                                                                                                                                                                                                                            tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgctttacgtggtgagtttattcgtggctgggatgacgggcgggggattgatacaggtcgctctattttaagtattcaggggtatgcaacggaggatcat                                >  1:421422‑M1/1‑37 (MQ=255)                                                                                                                                                                                                                                            tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag                                                                                                                                                                                                                                                             >  1:200636/1‑54 (MQ=255)                                                                                                                                                                                                                                              cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGt                                                                                                                                                                            <  2:626295/133‑1 (MQ=255)                                                                                                                                                                                                                                                aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAAc                                                                                                                                                                                                                                                         <  2:200633/54‑1 (MQ=255)                                                                                                                                                                                                                                                 aCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTACGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGGCAACggggg                            >  1:806998/1‑274 (MQ=255)                                                                                                                                                                                                                                                      tctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagcatacccggaactggcaaaggcttatccgaccaataaattgcctgctttacgtggtgggtttattcgtggctggggtgacgg                                                                                             >  2:28352‑M1/1‑27 (MQ=255)                                                                                                                                                                                                                                                      tctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc                                                                                                                                                                                                                                                                      >  2:136550/1‑35 (MQ=255)                                                                                                                                                                                                                                                      tctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAt                                                                                                                                                                                                   >  2:158283/1‑102 (MQ=255)                                                                                                                                                                                                                                                          gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgatttacgtggtgagtttattcgtggctgggatgacgggcgg                                                                                         <  1:28352‑M1/204‑182 (MQ=255)                                                                                                                                                                                                                                                          gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                                                                                                                                                                  <  1:136550/35‑1 (MQ=255)                                                                                                                                                                                                                                                          gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAg                                                                                                                                                                                               <  1:158283/102‑1 (MQ=255)                                                                                                                                                                                                                                                               ccTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggggg                                                                                                                                       >  2:672969/1‑153 (MQ=255)                                                                                                                                                                                                                                                                   GGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGa                                                                                                                                                                                                             <  1:494209‑M1/79‑1 (MQ=255)                                                                                                                                                                                                                                                                   GGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGAt                                                                                                                                   >  1:672976‑M1/1‑153 (MQ=255)                                                                                                                                                                                                                                                                    GTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGt                                                                                                                                                                                                                                   <  1:513578‑M1/56‑1 (MQ=255)                                                                                                                                                                                                                                                                       TGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtgg                                                                                                                                                                                                         >  2:494204‑M1/1‑79 (MQ=255)                                                                                                                                                                                                                                                                        GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCa                                                                                                                                                                                                                               >  2:513573‑M1/1‑56 (MQ=255)                                                                                                                                                                                                                                                                         ggAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagcctctccgccaacacgctggctgacatgcaatggtgccgctttt                                                                                                                                                                                         >  2:349532‑M1/1‑8 (MQ=255)                                                                                                                                                                                                                                                                          ggtaagtctctgcattacctgttggtgtcccggttccgtggccttcagccactacgccatcaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgatttacgtggtgagtttattcgtggctgggatgacgggcgggggattgatacaggtcgctctattttaagtattcaggggtatgcaacggaggatcatgctcatggattaccgtcaagatccacgatt  <  1:48864‑M1/272‑269 (MQ=255)                                                                                                                                                                                                                                                                             aaGGctctgcattacctgttggtgtcccggttccgtggccgtcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctg                                                                                                                                                                                     <  1:349536‑M1/93‑90 (MQ=255)                                                                                                                                                                                                                                                                              aGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctg                                                                                                                                                                                                                  >  1:670074‑M1/1‑3 (MQ=255)                                                                                                                                                                                                                                                                               GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCg                                                                                                                                                                                                                                     <  2:222795‑M1/43‑1 (MQ=255)                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                             ATAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTG‑ACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGGCAACGGGGGGATATACAACCACTTCGTTTTTATTA  >  CP009273/1202991‑1203529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.