New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	38 (0.860)	39 (0.880)	28/302	NT	51.7%	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	35 (0.790)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

GCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTTTCGTGATTGTCACGCTCAAGCCCGTAGTCCCGTTCGAGCGTCGCGCAGAGGTCAGCGAGGGCGCGGTAGGCCCGATACGGCTCATGGATGGTGTTTCGGGTCGGGTGAATCTTGTTGATGGC  >  CP009273/360023‑360555                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                              cgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTTCCCGCCACCCCCCGGGCCGTTGCCTCGCAACGTTCAAATCCGCCCCCGGCGGCTTTGTCCTCCTCAGGAGCGCGTTCCCCGACAAACAACCGATCAAACGAAAGGCCCCGTCTTTCGACTGAAGCCTCCGGTTTATTTgattcctgggggagtggggcgtgttt                                                                                                                                                                                                                                                                    <  2:694590‑M1/194‑9 (MQ=255)                   aGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAATTGTCATACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcctcct                                                                                                                                                                                                                                                  <  1:720765‑M2/275‑30 (MQ=255)                          atcaaaggccgagtcgttcggatgcgccgttcgttttattggcggcctggggaattAATTCGGGGCAGTTAAGGGCGGGCGGCCTGCCCGCCACCCTCCGGGCGGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGAt                                                                                                                                                                                                                                           >  2:785559‑M1/57‑275 (MQ=255)                                  tGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtacttcccaccaccaccc                                                                                                                                                                                                                                    <  1:785568‑M2/274‑44 (MQ=255)                                       gAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGCGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccccccccccccgggccg                                                                                                                                                                                                                              <  1:398193‑M2/275‑50 (MQ=255)                                            ccGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattc                                                                                                                                                                                                                                                                          <  2:80414‑M2/226‑6 (MQ=255)                                                tgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctgg                                                                                                                                                                                                                                                                      >  1:80414‑M2/1‑217 (MQ=255)                                                                          cGATCCCAAATTCTGGGCAGTGTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTGCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCATACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCGTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggat                                                                                                                                                                                           >  1:662181‑M2/1‑191 (MQ=255)                                                                                        gtgaattttatggcgGGCGTCTCGCCCCCCCACCTCTGGGCCGTGGCTTGGCGACATTAAAATCCGCACCCGGCGGATTTGTCCTGCTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcagg                                                                                                                                                                             >  1:204587‑M2/7‑177 (MQ=255)                                                                                          gCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTACTGTCATGGGAAGATCCAGCTGACCCGGCTTTCCACcccccc                                                                                                                                                                             >  2:182482/1‑271 (MQ=255)                                                                                            aGTTTATGGCGGGCGTCCTGCCCTCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGTCGGATATGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGACTAttttt                                                                                                                                                                                                                               <  1:717079/221‑1 (MQ=255)                                                                                                              tGCCCGCCACCCTCCGGGCCGTTGCTTCTCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTNAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTcgcg                                                                                                                                                       <  1:694597/275‑1 (MQ=255)                                                                                                              tGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTcgcg                                                                                                                                                       <  1:182484/275‑1 (MQ=255)                                                                                                                              ggCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattc                                                                                                                                                                                                                                                                          <  1:592969‑M2/144‑6 (MQ=255)                                                                                                                               gCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGTGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcc                                                                                                                                                                                                                                                   <  1:509853‑M2/166‑29 (MQ=255)                                                                                                                                  gTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctgg                                                                                                                                                                                                                                                                      >  2:592964‑M2/1‑135 (MQ=255)                                                                                                                                   ttGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcc                                                                                                                                                                                                                                               >  2:509848‑M2/1‑134 (MQ=255)                                                                                                                                    tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagttta                                                                                                                                                                                                                                                               <  1:85282‑M2/149‑17 (MQ=255)                                                                                                                                    tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGt                                                                                                                                                                                                                         >  1:297268/1‑187 (MQ=255)                                                                                                                                        tCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggc                                                                                                                                                                                                                                                           >  2:85282‑M2/1‑129 (MQ=255)                                                                                                                                        tCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTGTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAAt                                                                                                                                                                                                                     <  2:297264/187‑1 (MQ=255)                                                                                                                                         cGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatgtcgggcgtcctgcccgcccccctccggcccgttgctt                                                                                                                                                                                                                        <  1:399569‑M2/183‑56 (MQ=255)                                                                                                                                                          cTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAATTAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatcccntcccggccgatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgaatgagcctctcgtttt                                                                                                           <  1:601007‑M2/275‑165 (MQ=255)                                                                                                                                                          cTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTAATGCCTGGGGAATTaattcctggcagtttatggcgggcgtc                                                                                                                                                                                                                                                    <  2:167609‑M2/138‑28 (MQ=255)                                                                                                                                                              cggcggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTAATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgc                                                                                                                                                                                                                                                >  1:167609‑M2/1‑107 (MQ=255)                                                                                                                                                                                   gagaGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatt                                                                                                                                                                                          <  1:808249‑M2/171‑86 (MQ=255)                                                                                                                                                                                   gagaGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggc                                                                                                                                                                                               <  1:691366‑M2/166‑81 (MQ=255)                                                                                                                                                                                   gagaGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAg                                                                                                                                                                                                                           >  1:148713/1‑138 (MQ=255)                                                                                                                                                                                       gCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtc                                                                                                                                                                                      >  2:808240‑M2/1‑82 (MQ=255)                                                                                                                                                                                       gCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggat                                                                                                                                                                                           >  2:691359‑M2/1‑82 (MQ=255)                                                                                                                                                                                       gCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTa                                                                                                                                                                                                                       <  2:148713/138‑1 (MQ=255)                                                                                                                                                                                        cGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtccttcccgccaccccccgggccgttgcctcgcaacgttcaaatccgcccccggcggctttgtcctcctcaggagcgcgttccccgacaaacaaccgatcaaacgaaaggccccgtctttcgactgaagcctccggtttatttgattcctgggggagtggggcgtgttt                                                                             <  2:694590‑M2/275‑195 (MQ=255)                                                                                                                                                                                        cGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatt                                                                                                                                                                                          <  2:149331‑M2/166‑86 (MQ=255)                                                                                                                                                                                        cGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcc                                                                                                                                                                                                                                               <  2:261971‑M2/113‑33 (MQ=255)                                                                                                                                                                                        cGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGCAGACGAAAGGGCCTc                                                                                                                                                                                                                                                >  1:31793/1‑112 (MQ=255)                                                                                                                                                                                        cGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTtat                                                                                                                                                                                                                             >  2:34142/1‑131 (MQ=255)                                                                                                                                                                                        cGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAg                                                                                                                                                                                                                           >  1:189726/1‑133 (MQ=255)                                                                                                                                                                                        cGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGACTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTTTCGTGATTGTCACGCTCAAGCCCGTAGTCCCGCTAGAGCGgcgcgcc                                                                             >  1:787340/1‑274 (MQ=255)                                                                                                                                                                                          ttCACCGACAAACAACAGATACAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtc                                                                                                                                                                                      >  1:714737‑M2/1‑79 (MQ=255)                                                                                                                                                                                            cACCGACAAACAACAGATAAATCGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATGTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTTTCGTGATTGTc                                                                                                                 <  1:85839/235‑1 (MQ=255)                                                                                                                                                                                            cACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtc                                                                                                                                                                                      >  1:149331‑M2/1‑77 (MQ=255)                                                                                                                                                                                            cACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgcc                                                                                                                                                                                                                                           >  1:261975‑M2/1‑77 (MQ=255)                                                                                                                                                                                            cACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAGGGGCCTCGTGa                                                                                                                                                                                                                                            <  2:31793/112‑1 (MQ=255)                                                                                                                                                                                            cACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGt                                                                                                                                                                                                                         <  1:34142/131‑1 (MQ=255)                                                                                                                                                                                            cACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTa                                                                                                                                                                                                                       <  2:189723/133‑1 (MQ=255)                                                                                                                                                                                                  caaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTTTCGTGATTGTCACg                                                                                                              >  2:660323/1‑232 (MQ=255)                                                                                                                                                                                                  caaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCAGCGTTTCGTGATTGTCACg                                                                                                              <  1:660330/232‑1 (MQ=255)                                                                                                                                                                                                            aTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcagg                                                                                                                                                                             <  2:318638‑M2/159‑99 (MQ=255)                                                                                                                                                                                                            aTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGaa                                                                                                                                                                                                                                                        >  2:734743/1‑84 (MQ=255)                                                                                                                                                                                                            aTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGtt                                                                                                                                                           >  1:307926/1‑177 (MQ=255)                                                                                                                                                                                                                aaCGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagag                                                                                                                                                                         >  1:318642‑M2/1‑57 (MQ=255)                                                                                                                                                                                                                aaCGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatt                                                                                                                                                                                          <  2:4003‑M2/142‑86 (MQ=255)                                                                                                                                                                                                                aaCGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAggg                                                                                                                                                                                                                                                    <  1:734751/84‑1 (MQ=255)                                                                                                                                                                                                                aaCGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTcgcg                                                                                                                                                       <  2:307922/177‑1 (MQ=255)                                                                                                                                                                                                                 atcaaaggcCGAGTCGTTCGGATGCGCCGTTCGTTTTATTGGCGGCCTGGGGAATTaattcggggcagttaagggcgggcggcctgcccgccaccctccgggcggttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattgggaattaattcttgaagacgaaagggcctcgtgat                                                    >  2:785559‑M2/4‑56 (MQ=255)                                                                                                                                                                                                                    aaaGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtc                                                                                                                                                                                      >  1:4003‑M2/1‑53 (MQ=255)                                                                                                                                                                                                                      aGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATCTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGAc                                                                                                                                                                                               >  1:538793/1‑131 (MQ=255)                                                                                                                                                                                                                          ccAGTCTTTCGACTGAGCCTGTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAgg                                                                                                                                                                                           <  2:538788/131‑1 (MQ=255)                                                                                                                                                                                                                             gTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattc                                                                                                                                                                                                                                                                          <  1:735277‑M2/49‑6 (MQ=255)                                                                                                                                                                                                                              tCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacga                                                                                                                                            >  2:92463‑M2/1‑43 (MQ=255)                                                                                                                                                                                                                                 ttCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctgg                                                                                                                                                                                                                                                                      >  2:735269‑M2/1‑40 (MQ=255)                                                                                                                                                                                                                                   cGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctc                                                                                                                                                                                                    <  2:422754‑M2/113‑76 (MQ=255)                                                                                                                                                                                                                                      cTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTcgcg                                                                                                                                                       <  2:2726/155‑1 (MQ=255)                                                                                                                                                                                                                                       tGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccgg                                                                                                                                                                                                >  1:422759‑M2/1‑34 (MQ=255)                                                                                                                                                                                                                                        gAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagc                                                                                                                     <  1:138115‑M2/187‑155 (MQ=255)                                                                                                                                                                                                                                        gAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggc                                                                                                                                                                                                                                                                     <  2:181981‑M2/43‑11 (MQ=255)                                                                                                                                                                                                                                        gAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAg                                                                                                                                                                                                                           >  1:430121/1‑85 (MQ=255)                                                                                                                                                                                                                                        gAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCAt                                                                                                                                                                                                                >  1:82511/1‑96 (MQ=255)                                                                                                                                                                                                                                        gAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGtt                                                                                                                                                           >  1:535111/1‑149 (MQ=255)                                                                                                                                                                                                                                            cTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagccttt                                                                                                                 >  2:138115‑M2/1‑29 (MQ=255)                                                                                                                                                                                                                                            cTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtt                                                                                                                                                                                                                                                                 >  1:181983‑M2/1‑29 (MQ=255)                                                                                                                                                                                                                                            cTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTa                                                                                                                                                                                                                       <  2:430116/85‑1 (MQ=255)                                                                                                                                                                                                                                            cTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGa                                                                                                                                                                                                            <  2:82511/96‑1 (MQ=255)                                                                                                                                                                                                                                            cTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTcgcg                                                                                                                                                       <  2:535106/149‑1 (MQ=255)                                                                                                                                                                                                                                              ttCGTTTTATTTGATGCCTGGGGAATTGGGaattaatt                                                                                                                                                                                                                                                                    >  1:280026/1‑38 (MQ=255)                                                                                                                                                                                                                                                  ttttATTTGATGCCTGGGGAATTGGGAATTAATTCTTg                                                                                                                                                                                                                                                                <  2:280022/38‑1 (MQ=255)                                                                                                                                                                                                                                                        ttGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactaaggagagcgttcaccgacaaacaacaga                                                                                                                                                    >  1:585033‑M2/1‑17 (MQ=255)                                                                                                                                                                                                                                                                 ggggAATTGGGAATTAATTTTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCNGCCGACCANGCTTTCCACGCCAGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTTTCGTGATTGTCACGCTCAAGCCCGTAGTCCCGTTCGAGCGTCGCGCAGAGGTCAGCGAGGGCGCGGTAGGCCCGATACGGCTCATGGATGGTCTTTCGGGTCGGGTGAATCTTGTTGAt     <  1:532032/274‑1 (MQ=255)                                                                                                                                                                                                                                                                   ggaattgggaattAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTTTCGTGATTGTCACGCTCAAGCCCGTAGTCCCGTTCGAGCGTCGCGCAGAGGTCAGCGAGGGCGCGGTAGGCCCGATACGGCTCATGGATGGTGTTTCGGGTCGGGTGAATCTTGTTTATGGc  >  1:472517/1‑275 (MQ=255)                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                              GCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTTTCGTGATTGTCACGCTCAAGCCCGTAGTCCCGTTCGAGCGTCGCGCAGAGGTCAGCGAGGGCGCGGTAGGCCCGATACGGCTCATGGATGGTGTTTCGGGTCGGGTGAATCTTGTTGATGGC  >  CP009273/360023‑360555

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.