New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2784916	76 (1.890)	8 (0.210)	7/288	NT	8.4%	coding (285/1449 nt)	gabD	succinate‑semialdehyde dehydrogenase I, NADP‑dependent
	?	CP009273	= 2785027	104 (2.790)					coding (396/1449 nt)	gabD	succinate‑semialdehyde dehydrogenase I, NADP‑dependent

AACGACAGTAACTTATTCCGCCAGCAGGCGTTGATTAACGGGGAATGGCTGGACGCCAACAATGGTGAAGCCATCGACGTCACCAATCCGGCGAACGGCGACAAGCTGGGTAGCGTGCCGAAAATGGGCGCGGATGAAACCCGCGCCGCTATCGACGCCGCCAACCGCGCCCTGCCCGCCTGGCGCGCGCTCACCGCCAAAGAACGCGCCACCATTCTGCGCAACTGGTTCAATTTGATGATGGAGCATCAGGACGATTTAGCGCGCCTGATGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2784641‑2784916 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatgaccAGGAATGGTGTCGCCATAAATGCGTTTGCCTTCTTCGGCAAACCACTCAATAAAGGAGGCGGCGTAGCTGATTTCGCCTTTCGCTTCGGCCAGTGGTTTACCCTGTTCGAGGGTCATCAGGCGCGCTAAATCGTCCTGATGCTCCATCATCAAATTGAACCAGTTGCGCAGAATGGTGGCGCGTTCTTTGGCGGTGAGCGCGCGCCAGGCGGGCAGGGCGCGGTTGGCGGCGTCGATAGCGGCGCGGGTTTCATCCGCGCCCATTTTC  <  CP009273/2785027‑2784760                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AACGACAGTAACTTAGTCCGCGAGCAGGCGTTGATTAACGGGGAATGGCTGGACGCCAACAATGGTGAAGCCATCGACGTCACCAATCCGGCGAACGGCGACAAGCTGGGTAGCGTGCCGAAAATGGGCGCGGATGAAACCCGCGCCGCTATCGACGCCGCCAACCGCGCCCTGCCCGCCTGGNGCGCGCTCACCGCCAAAGAACGCGCCAACATTCTGCGCAACTGGTTCAAGTCGATGATGGAGCATCAGGACGATTTAGCGCGCCTGATGAC                                                                                                                                                                                                                                                                               >  1:502882/1‑275       AGTAACTTATTCCGCCAGCAGGCGTTGATTAACGGGGAATGGCTGGACGCCAACAATGGTGAAGCCATCGACGTCACCAATCCGGCGAACGGCGACAAGCTGGGTAGCGTGCCGAAAATGGGCGCGGATGAAACCCGCGCCGCTATCGACGCCGCCAACCGCGCCCTGCCCGCCTGGCCCGCGCCCACCGCCAAAAAACGCGCCACCATTCTGCGCAACTGGCTCAATTTGATGATGGAGCATCAGTACGATTTAGCGCGCCTGATGACCgccga                                                                                                                                                                                                                                                                         >  2:11266/1‑270                                                          AACAATGGTGAAGCCATCGACGTCACCAATCCGGCGAACGGCGACAAGCTGGGTAGCGTGCCGAAAATGGGCGCGGATGAAACCCGCGCCGCTATCGACGCCGCCAACCGCGCCCTGCCCGCCTGGCGCGCGCTCACCGCCAAAGACCGCGCCACCATNCTGCGCAACTGGTTCAATTTGATGATGGAGCATCAGGACGATTTAGCGCGCCTGATG                                                                                                                                                                                                                                                                                 >  1:677843/1‑216                                                                                                                                                             GCCGCCAACCGCGCCCTGCCCGCCTGGCGCGCGCTCACCGCCAAAGAACGCGCCACCATTCTGCGCAACTGGTTCAATTTGATGATGGAGCATCAGGACGATTTAGCGCGCCTGATGACCAGGAATGGTGTCGCCATAAATGCG                                                                                                                                                                                                                                                      >  1:60500/1‑144                                                                                                                                                                 CCAACCGCGCCCTGCCCGCCTGGCGCGCGCTCACCGCCAAAGAACGCGCCACCATTCTGCGCAACTGGTTCAATTTGATGATGGAGCATCAGGACGATTTAGCGCGCCTGATGACCAGGAATGGTGTCGCCATAAATGCGTTTG                                                                                                                                                                                                                                                  <  2:60499/144‑1                                                                                                                                                                                     TGGCGCGCGCTCACCGCCAAAGAACGCGCCACCATTCTGCGCAACTGGTTCAATTTGATGATGGAGCATCAGGACGATTTAGCGCGCCTGATGACCAGGAATGGTGTCGCCATAAATGCGTTTGCCTTCTTCGGCAAACCACTCAATAAAGGAGGCGGCGTAGCTGATTTCGCCTTTCGCTTCGGCCAGTGGTTTA                                                                                                                                                                          >  2:311624/1‑196                                                                                                                                                                                         GCGCGCTCACCGCCAAAGAACGCGCCACCATTCTGCGCAACTGGTTCAATTTGATGATGGAGCATCAGGACGATTTAGCGCGCCTGATGACCAGGAATGGTGTCGCCATAAATGCGTTTGCCTTCTTCGGCAAACCACTCAATAAAGGAGGCGGCGTAGCTGATTTCGCCTTTCGCTTCGGCCAGTGGTTTACCCT                                                                                                                                                                      <  1:311629/196‑1                                                                                                                                                                                                                GCCACCATTCTGCGCAACTGGTTCAATTTGATGATGGAGCATCAGGACGATTTAGCGCGCC                                                                                                                                                                                                                                                                                      >  2:205591/1‑61                                                                                                                                                                                                                    CCATTCTGCGCAACTGGTTCAATTTGATGATGGAGCATCAGGACGATTTAGCGCGCCTGAT                                                                                                                                                                                                                                                                                  <  1:205593/61‑1                                                                                                                                                                                                                                              ATGATGGAGCATCAGGACGATTTAGCGCGCCTGATGACCAGGAATGGTGTCGCCATAAATGCG                                                                                                                                                                                                                                                      >  2:330563/1‑63                                                                                                                                                                                                                                                  TGGAGCATCAGGACGATTTAGCGCGCCTGATGACCAGGAATGGTGTCGCCATAAATGCGTTTG                                                                                                                                                                                                                                                  <  1:330569/63‑1                                                                                                                                                                                                                                                           AGGACGATTTAGCGCGCCTGATGACCAGGAATGGTGTCGCCATAAATGCGTTTGCCTTCTTCGGCAAACCACTCAATAAAGGAGGCGGCGTAGCTGATTTCGCCT                                                                                                                                                                                               >  2:348652/1‑105                                                                                                                                                                                                                                                               CGATTTAGCGCGCCTGATGACCAGGAATGGTGTCGCCATAAATGCGTTTGCCTTCTTCGGCAAACCACTCAATAAAGGAGGCGGCGTAGCTGATTTCGCCTTTCG                                                                                                                                                                                           <  1:348658/105‑1                                                                                                                                                                                                                                                                     tatcCGCCTGATGACCAGGAATGTTGGCGCCATAAATGCTTTTGCCTTCTTCGGCAAACCACTCAATAAAGGAGGCGGCGTAGCTGATTTCGCCTTTAGCTTCGGCCAGTGGTTTACCCTGTTCGAGGGTCATCAGGCGCGCTAAATCGTCCTGATGCTCCATCATCAAATTGAACCAGTTGCGCAGAATGGTGGCGCGTTCTTTGGCGGTGAGCGCGCGCCAGGCGGGCAGGGCGCGGTTGGCGGCGTCGATAGCGGCGCGGGTTTCATCCGCG           <  1:391105/271‑1                                                                                                                                                                                                                                                                          GCCTGATGACCAGGAATGGTGTCGCCATAAATGCGTTTGCCTTCTTCGGCAA                                                                                                                                                                                                                                     >  1:668269/1‑52                                                                                                                                                                                                                                                                              GATGACCAGGAATGGTGTCGCCATAAATGCGTTTGCCTTCTTCGGCAAACCA                                                                                                                                                                                                                                 <  2:668255/52‑1                                                                                                                                                                                                                                                                               ccGACCAGGAATGGTGTCGCCATAAATGCTTTTGCCTTCTTCGGCAAACCACTCAATAAAGGAGGCGGCGTAGCTGATTTCGCCTTTCGCTTCGGCCAGTGGTTTACCCTGTTCGAGGGTCATCAGGCGCGCTAAATCGTCCTGATGCTCCATCATCAAATTGAACCAGTTGCGCAGAATGGTGGCGCGTTCTTTGGCGGTGAGCGCGCGCCAGGCGGGCAGGGCGCGGTTGGCGGCGTCGATAGCGGCGCGGGTTTCATCCGCGCCCATTTTC  <  1:36758/272‑1                                                                                                                                                                                                                                                                               ATGACCAGGAATGGTGTCGCCATAAATGCGTTTGCCTTCTTCGGCAAACCACTCAATAAAGGAGGCGGCGTAGCTGATTTCGCCTTTCGCTTCGTCCAGTGGTTTACCCTGTTCGCGGGTCATCAGGCGCGCTAAATCGTCCTGATGCTCCAGCCTCGAATTGAACCAGTTGCGCAGACTGGTGGCGCGTTCTTTGGCGGTGCGCGCGCGCCAGCCGTGCAGGGCGCGGTTGAGGGCGGCGGTAGCGGCGAGGGGGTCATCCGCGACCGTTTT   >  2:730932/1‑273                                                                                                                                                                                                                                                                               ATGACCAGGAATGGTGCCGCCATAAATGCGTTTGCCTTCTTCGGCAAACCACTCAATAAAGGAGGCGGCGTAGCTGATTTCGCCTTTCGCTTCGGCCAGTGGTTTACCCTGTTCGAGGGTCATCAGGCGCGCTAAATCGTCCTGATGCTCCATCATCAAATTGAA                                                                                                               >  1:547926/1‑165                                                                                                                                                                                                                                                                                    CAGGAATGGTGTCGCCATAAATGCGTTTGCCTTCTTCGGCAAACCACTCAATAAAGGAGGCGGCGTAGCTGATTTCGCCTTTCGCTTCGGCCAGTGGTTTACCCTGTTCGAGGGTCATCAGGCGCGCTAAATCGTCCTGATGCTCCATCATCAAATTGAACCAGTTGCGCAGAATGGTGGCGCGTTCTTTGGCGGTGAGCGCGCGCCAGGCGGGCAG                                                      >  2:694406/1‑217                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AACGACAGTAACTTATTCCGCCAGCAGGCGTTGATTAACGGGGAATGGCTGGACGCCAACAATGGTGAAGCCATCGACGTCACCAATCCGGCGAACGGCGACAAGCTGGGTAGCGTGCCGAAAATGGGCGCGGATGAAACCCGCGCCGCTATCGACGCCGCCAACCGCGCCCTGCCCGCCTGGCGCGCGCTCACCGCCAAAGAACGCGCCACCATTCTGCGCAACTGGTTCAATTTGATGATGGAGCATCAGGACGATTTAGCGCGCCTGATGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2784641‑2784916 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatgaccAGGAATGGTGTCGCCATAAATGCGTTTGCCTTCTTCGGCAAACCACTCAATAAAGGAGGCGGCGTAGCTGATTTCGCCTTTCGCTTCGGCCAGTGGTTTACCCTGTTCGAGGGTCATCAGGCGCGCTAAATCGTCCTGATGCTCCATCATCAAATTGAACCAGTTGCGCAGAATGGTGGCGCGTTCTTTGGCGGTGAGCGCGCGCCAGGCGGGCAGGGCGCGGTTGGCGGCGTCGATAGCGGCGCGGGTTTCATCCGCGCCCATTTTC  <  CP009273/2785027‑2784760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.