New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4551430 =	53 (1.320)	4 (0.100)	3/304	NT	8.1%	coding (1063/1179 nt)	yjiJ	DUF1228 family putative inner membrane MFS superfamily transporter
	?	CP009273	4551990 =	39 (0.990)					coding (503/1179 nt)	yjiJ	DUF1228 family putative inner membrane MFS superfamily transporter

CACGACATCTCTGGTGATGACTATCGCCCGCCAACTGAGCGTACCGGGAAATCTCAATCTTTTAGGCTTTGTGACGCTCATTTACGGCATTGGGCAAATCCTCGGCCCGGCGCTGACCAGTATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4551554‑4551430 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcGAGGAGAGGTCAAAATGCAGGCCTGCCAGAACATATTCATTGCCCAGTGCGATGCCAATGCCAACGCCAGAAAACAAAGCTGCCAGCACAAAAGGATGGCGC  >  CP009273/4551990‑4552091                                                                                                                                                                                                                                     CACGACATCTCTGGTGATGACTATCGCCCGCCAACTGAGCGTACCGGGAAATCTCAATCTTTTAGGCTTTGTGACGCTCATTTACGGCATTGGGCAAATCCTCGGCCCGGCGCTGACCAGTAT                                                                                                          >  2:257971/1‑123                                                                                          TTGGGCAAATCCTCGGCCCGGCGCTGACCAGTATGCGAGGAGAGGTCAAAATGCAGGCCTGCCAGAACATATTCATT                                                               >  1:451743/1‑77                                                                                              GCAAAGCCTCGGCCCGGCGCTGACCAGTATGCGAGGAGAGGTCAAAATGCAGGCCTGTCAGAACATATTCATTGCCC                                                           <  2:451736/77‑1                                                                                                       CGGCCCGGCGCTGACCAGTATGCGAGGAGAGGTCAAAATGCAGGCCTGCCAGAACATATTCATT                                                               >  2:731716/1‑64                                                                                                           CCGGCGCTGACCAGTATGCGAGGAGAGGTCAAAATGCAGGCCTGCCAGAACATATTCATTGCCC                                                           <  1:731730/64‑1                                                                                                                           TGCGAGGAGAGGTCAATATGCAGGCCTGAGAGAACATATTCATTGCCCAGTGCGATGCCAATGCCAACGCCAGAAAACAAAGCTGCCAGCACAAAAGGATGGCGa  >  1:547755/1‑104                                                                                                                                                                                                                                     CACGACATCTCTGGTGATGACTATCGCCCGCCAACTGAGCGTACCGGGAAATCTCAATCTTTTAGGCTTTGTGACGCTCATTTACGGCATTGGGCAAATCCTCGGCCCGGCGCTGACCAGTATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4551554‑4551430 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcGAGGAGAGGTCAAAATGCAGGCCTGCCAGAACATATTCATTGCCCAGTGCGATGCCAATGCCAACGCCAGAAAACAAAGCTGCCAGCACAAAAGGATGGCGC  >  CP009273/4551990‑4552091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.