New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	280492 =	78 (1.940)	3 (0.080)	3/302	NT	3.7%	coding (1581/1968 nt)	yagF	CP4‑6 prophage; dehydratase family protein
	?	CP009273	280805 =	79 (2.020)					coding (1894/1968 nt)	yagF	CP4‑6 prophage; dehydratase family protein
Rejected: Frequency below/above cutoff threshold.

CCGGGTGTCGTCCGGCAAAAAGTCGTGGGCGTGCAGGTCCGGGTGCGTCTGCCGCCGCGCCAGCTCGCGCGCGCCCTCTTCCGGCGTCAGCGGGTTGTCCGCGGTGCCGATGAAGTTCACGCTGCCAGTTAACGTCAGACGATCCACGGCAATCTCGATGATGTCGTTATCGCGCAGCTTGCCAATCGGCCCGCCCGCCAGCGCCTCCGGCGACACGTGGCCGAAGCAGGCGCCCGTCGACACGCCCGAGAAGCGCGCATCGGTGATGAGCGACACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/280768‑280492 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGTAAAAAAGCGCTCGGAATTTAATTATTTTAAGAGATAAAACCGTCTGCGGAATATTTCCCGCAGACGGCTTTGTTGTTTTTGAAATTTATTAATTTAAA  >  CP009273/280805‑280956                                                                                                                                                                                                                                                                                                                                                                                                                                               CCGGGTGTCGTCCGGCAAAAAGTCGTGGGCGTGCAGGTCCGGGTGCGTCTGCCGCCGCGCCAGCTCGCGCGCGCCCTCTGCCGGCGTCAGCGGGTTGTCCGCGGTGCCGATGAAGTTCACGCTGCCAGTTAACGTCAGACGATCCACGGCAATCTCGATGATGTCGTTATCGCGCAGCTTGCCAATCGGCCCGCCCGCCAGCGCCTCCGGCGACACGTGGCCGAAGCAGGCGCCCGTCGACACGCCCGAGAAGCGCGCATCGGTGATGAGCGACA                                                                                                                                                            <  1:717168/275‑1                CAAAAAGTCGTGGGCGTGCAGGTCCGGGTGCGTCTGCCGCCGCGCCAGCTCGCGCGCGCCCTCTTCCGGCGTCAGCGGGTTGTCCGCGGTGCCGATGAAGTTCACGCTGCCAGTTAACGTCAGACGATCCACGGCAATCTCGATGATGTCGTTATCGCGCAGCTTGCCAATCGGCCCACCCGCCAGCGCCTCCGGCGACACGTGGCCGAAGCAGGCGCCCGTCGACACGCCCGAGAAGCCCGCAACGGTGATGAGCGACACCagtctcacataa                                                                                                                                              >  1:405217/1‑262                                                                                                                                       TCAGACGATCCACGGCAATCTCGATGATGTCGTTATCGCGCAGCTTGCCAATCGGCCCGCCCGCCAGCGCCTCCGGCGACACGTGGCCGAAGCAGGCGCCCGTCGACACGCCCGAGAAGCGCGCATCGGTGATGAGCGACACCTGGCAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGTAAAAAAGCCCTCGGCATTTAATTATTT                                                                         >  1:108315/1‑224                                                                                                                                                                           CGCGCAGCTTGCCAATCGGCCCGCCCGCCAGCGCCTCCGGCGACACGTGGCCGAAGCAGGCGCCCGTCGACACGCCCGAGAAGCGCGCATCGGTGATGAGCGACA                                                                                                                                                            <  1:394748/105‑1                                                                                                                                                                                            GGCCCGCCCGCCAGCGCCTCCGGCGACACGTGGCCGAAGCAGGCGCCCGTCGACACGCCCGAGAAGCGCGCATCGGTGATGAGCGACACCTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGTAAAAAAGCGCTCGGAATTTAATTATTTTAAGAGATAAAACCGT                                                         >  1:385433/1‑187                                                                                                                                                                                                CGCCCGCCAGCGCCTCCGGCGACACGTGGCCGAAGCAGGCGCCCGTCGACACGCCCGAGAAGCGCGCATCGGTGATGAGCGACACCTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGTAAAAAAGCGCTCGGAATTTAATTATTTTAAGAGATAAAACCGTCTGC                                                     <  2:385426/187‑1                                                                                                                                                                                                CGCCCGCCAGCGCCTCCGGCGACACGTGGCCGAAGCAGGCGCCCGTCGACACGCCCGAGAAGCGCGCATCGGTGATGAGCGAC                                                                                                                                                             <  2:505350/83‑1                                                                                                                                                                                                                                                                                    CCTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGTAAAAAAGCGCTCGGAATTTAATTATTTTAAGAGATAAAACCGTCTGCGGAATATTTCCCGCAGACGGCTTTGTTGTTTTTGAAATTTATTAATTTAAA  >  2:342524/1‑154                                                                                                                                                                                                                                                                                                                                                                                                                                               CCGGGTGTCGTCCGGCAAAAAGTCGTGGGCGTGCAGGTCCGGGTGCGTCTGCCGCCGCGCCAGCTCGCGCGCGCCCTCTTCCGGCGTCAGCGGGTTGTCCGCGGTGCCGATGAAGTTCACGCTGCCAGTTAACGTCAGACGATCCACGGCAATCTCGATGATGTCGTTATCGCGCAGCTTGCCAATCGGCCCGCCCGCCAGCGCCTCCGGCGACACGTGGCCGAAGCAGGCGCCCGTCGACACGCCCGAGAAGCGCGCATCGGTGATGAGCGACACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/280768‑280492 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGTAAAAAAGCGCTCGGAATTTAATTATTTTAAGAGATAAAACCGTCTGCGGAATATTTCCCGCAGACGGCTTTGTTGTTTTTGAAATTTATTAATTTAAA  >  CP009273/280805‑280956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.