New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	481163 =	0 (0.000)	32 (0.800)	30/310	NT	100%	intergenic (‑88/‑54)	acrA/acrR	multidrug efflux system/transcriptional repressor
	?	CP009273	= 1463497	NA (NA)					noncoding (1/1331 nt)	IS2	repeat region

TTGGATTCTGACAGTTCCCAGATCTCACTGAACAAATCCGACTTGTCTTTAAAATGCCAGTAGATTGCACCGCGCGTAACGCCAGCTGCTTTTGCAATCTCGCCCAGCGAGGTGGATGATACCCCCTGCTGTGAGAAAAGACGTAGAGCCACATCGAGGATGTGTTGGCGCGTTTCTTGCGCTTCTTGTTTGGTTTTTCGTGCCATATGTTCGTGAATTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/481422‑481163 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGG  <  CP009273/1463497‑1463244                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    cTGGGTTCTTACAGTTCCCAGATCTCACTGAACAAATCCGACTTGTCTTTAAAATGCCAGTAGATTGCACCGTGCGTAACGCCAGCTGCGTTTGCAATCTCGACCAGCGAGGTGGATGATACCCCCTGCTGTGAGAAAAGACGTAGAGCCACATCGAGGATGTGTTGGCGGGTTTCTTGCGCTTCTTGTTTGGTTTTTCGTGCCATATGTTCGTGAATTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTGGCCCCCTG                                                                                                                                                                                                                                                 <  1:238899/274‑1                           ACTGACCAAATCCGACTTGTCTTTAAAATGCCAGTAGATTGCACCGCGCGTAACGCCAGCTGCTTTTGCACTCTCGCCCAGCGAGGTGGATGATACCCCCTGCTGTGAGAAAAGACGTAGAGCCACATCGAGGATGTGTTGGCGCGTTTCTTGCTCTTCTTGTTTGGTTTTTCGTGCCATATGTTCGTGAATTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTGGCCCCCTGAATCTACAGACCTCCACTATCACT                                                                                                                                                                                                                         >  2:131034/1‑273                               AACAAATCCGACTTGTCTTTAAAATGCCAGTAGATTGCACCGCGCGTAACGCCAGCTGCTTTTGCAATCTCGCCCAGCNGGGTGGATGATACCCCCTGCTGTGAGAAAAGACGTAGAGCCACATCGAGGATGTGTTGGCGCGTTTCTTGCGCTTCTTGTTTGGTTTTTCGTGCCATATGTTCGTGAATTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTG                                                                                                                                                                                                                                                         <  1:663822/237‑1                                     TCCGTCTTGTTTGTCAAATGCCAGTGGATTGCACCGCGCGTAACGCCAGCTGCTTTTGCAATCTCGCCCAGCGAGGTGGATGATACCCCCTGCTGTGAGAAAAGACGTAGAGCCACATCGAGGATGTGTTGGCGCGTTTCTTGCGCTTCTTGTTTGGTTTTTCGTGCCATATGTTCGTGAATTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGAT                                                                                                                                                                                                             <  2:138133/275‑1                                     TCCGACTTGTCTTTAAAATGCCAGTAGATTGCACCGCGCGTAACGCCAGCTGCTTTTGCAATCTCGCCCAGCGAGGTGGATGATACCCCCTGCTGTGAGAAAAGACGTAGAGCCACATCGAGGATGTGTTGGCGCGTTTCTTGCGCTTCTTGTTTGGTTTTTCGTGCCATATGTTCGTGAATTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGA                                                                                                                                                                                                              <  1:131035/274‑1                                                           cgtacgTTGCACCGGGCGTAACGCCAGCTGCTTTTGCAATCTCGCCCAGGGAGGTGGATGATGCCCCCTGCTGTGAGAAAAGACGTAGAGCCACATGGAGGATGTGTTGGCGCGTTTCTTGCGCTTCTTGTTTGGTTTTTAGTGCCATATGTTCGTGAATTTACAGGCGTTAGAGTTACATACATTTGTGAATGTATGTACCTAGACTGGCCCTCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTGTTTAGA                                                                                                                                                                                       <  2:169128/269‑1                                                                  TGCACCGCGCGTAACGCCAGCTGCTTTTGCAATCTCGCCCAGCGAGGTGGATGATACCCCCTGCTGTGAGAAAAGACGTAGAGCCACATCGAGGATGTGTTGGCGCGTTTCTTGCGCTTCTTGTTTGGTTTTTCGTGCCATATGTTCGTGAATTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTTGCCCCCTGAATCTCCACACAACCAATATCACTTAAATAATTGATAGTCTTAATCCTAGTTTTTATACTAGcat                                                                                                                                                                                >  2:184723/1‑272                                                                       CGCGCGTAACGCCAGCTGCTTTTGCAATCTCGCCCAGCGAGGTGGATGATACCCCCTGCTGTGAGACAAGACGTAGAGCAACATCGAGGATGTGTTGGCGCGTTTCTTGCGCTTCTTGTTTGGTTTTTCGTGCCATATGTTCGTGAATTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTGGCACCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTCGTTTTTAGACTAATCATTGGA                                                                                                                                                                           >  1:252741/1‑275                                                                          GCGTAACGCCAGCTGCTTTTGCAATCTCGCCCAGCGAGGTGGATGATACCCCCTGCTGTGAGAAAAGACGTAGAGCCACATCGAGGATGTGTTGGCGCGTTTCTTGCGCTTCTTGTTTGGTTTTTCGTGCCATATGTTCGTGAATTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGACATTGGAGA                                                                                                                                                                         >  1:324282/1‑274                                                                            GTAACGCTAGCTTCTTTTGCAATCTCGCCCAGCGAGGTGGATGATACCCCCTGGTGTGAGAAAAGACGTAGAGCCACATCGAGGATGTGTTGGCGCGTTTCTTGCGCTTCTTGTTTGGTTTTTCGTGCCATATGTTCGTGAATTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACA                                                                                                                                                                      <  1:72082/275‑1                                                                             tacCGCCAGCTGCTTTTGCAATCTCGCCCAGCGTGGTGGATGATACACCCTGTTGTGANAAAAGACGTAGAGCCACATTGAGGATGTGTTGGCGCGTTTCTTGCGCTTCTTGTTTGGTTTTTCGTGCCATATGTTCGTGAATTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAAT                                                                                                                                                                                                                               <  1:663059/214‑1                                                                                    AGCTGCTTTTGCAATCTCGCCCAGCGAGGTGGATGATACCCCCTGCTGTGAGAAAAGACGTAGAGCCACATCGAGGATGTGTTGGCGCGTTTCTTGCGCTTCTTGTTTGGTTTTTCGTGCCATATGTTCGTGAATTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTG                                                                                                                                                              <  1:184725/275‑1                                                                                                                              CTGCTGTGAGAAAAGACGTAGAGCCACATCGAGGATGTGTTGGCACGTTTCTTGCGCTTCTTGTTTGGTTTTTCGTGCCATATGTTCGTGAATTTACAGTCGTTAGCTTTACATACATTTGTTAATGTATTTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATACGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGCGAACAGATGATTAATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACCGG                                                                                                                    >  1:307794/1‑275                                                                                                                                                               GATGTGTTGGCGCGTTTCTTGCGCTTCTTGTTTGGTTTTTCGTGCCATATGTTCGTGAATTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGNCGTACCACACAGGAAAAGAGCACAATTGTTCAACATAACTGTGAA                                                                                    >  2:456456/1‑274                                                                                                                                                                   TGTTGGCGCGTTTCTTGCGCTTCTTGTTTGGTTTTTCGTGCCATATGTTCGTGAATTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATAGCAATTGTTCAGCAGAGCTTTGAACCGG                                                                                >  1:268169/1‑274                                                                                                                                                                          GCGTTTCTTGCGCTTCTTGTTTGTTTTTTCGTGCCATATGTTCGTGAATTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACG                                                                        <  1:456463/275‑1                                                                                                                                                                             TTTCTTGCGCTTCTTGTTTGGTTTTTCGTGCCATATGTTCGTGAATTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGANTGATGTCTNAGGGCCGGAGAAAAGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAAACGGGGATGACGGTC                                                                     >  1:490396/1‑275                                                                                                                                                                                                ttTTTTTCGGGCCATATTTTCTTGATTTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCA                                                    <  2:324276/271‑1                                                                                                                                                                                                 GTTTTTCGTGCCATATGTTCGTGAATTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTGGCCCCCTGAATCTC                                                                                                                                                                                                                                           >  2:202447/1‑89                                                                                                                                                                                                     TTCGTGCCATATGTTCGTGAATTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTGGCCCCCTGAATCTCCAGA                                                                                                                                                                                                                                       <  1:202449/89‑1                                                                                                                                                                                                                    CGTGAATTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTGGCCCCCTGACTCTCCAGACAACCAATATCACTTAAATAAG                                                                                                                                                                                                                 >  2:339887/1‑96                                                                                                                                                                                                                        AATTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGAT                                                                                                                                                                                                             <  1:339893/96‑1                                                                                                                                                                                                                            aatagttattaagTTTAAATACATTTNATAATTTATGTAACTATACTGGCCCCCTGAATTTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCT                      <  2:490387/262‑1                                                                                                                                                                                                                            TACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTGGCCCCCTGAATCTCC                                                                                                                                                                                                                                          >  1:671159/1‑63                                                                                                                                                                                                                                GGCGTTAGATTTACATACATTTGTGAATGTATGTACCTAGACTGGCCCCCTGAATCTCCAGAC                                                                                                                                                                                                                                      <  2:671145/63‑1                                                                                                                                                                                                                                  CGTTATATTTACATACATTTGTTAATGTATTTACCTAGACTTGCCCCCTGAATCTCCAGACAACCAATATCAATTAAATAAGTGATAGTCTTAATACTAGTTTTTTGACTAGTCAGTGTAGAACAGAGGATTGATGTCTTAGGGCCGGAGAACCGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCG                <  1:416242/275‑1                                                                                                                                                                                                                                            ACATACATTTGTGAATGTATGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATAC      >  1:184359/1‑275                                                                                                                                                                                                                                             CATACATTTGTGAATGTATGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAG                                                                                                                                                                                                                 >  2:35504/1‑71                                                                                                                                                                                                                                                 CATTTGTGAATGTATGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGAT                                                                                                                                                                                                             <  1:35505/71‑1                                                                                                                                                                                                                                                  ATTTGTGAATGTATTTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTC                                                                                                  >  1:310659/1‑177                                                                                                                                                                                                                                                    TTGTGAATGTATGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGTAACATGGTGTAGCAGCCAGCCAGTTATTTATCTGGCGTCAGCCATCCCAGG  >  1:324330/1‑271                                                                                                                                                                                                                                                      GTGAATGTATGTACCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCA                                                                                              <  2:310654/177‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTGGATTCTGACAGTTCCCAGATCTCACTGAACAAATCCGACTTGTCTTTAAAATGCCAGTAGATTGCACCGCGCGTAACGCCAGCTGCTTTTGCAATCTCGCCCAGCGAGGTGGATGATACCCCCTGCTGTGAGAAAAGACGTAGAGCCACATCGAGGATGTGTTGGCGCGTTTCTTGCGCTTCTTGTTTGGTTTTTCGTGCCATATGTTCGTGAATTTACAGGCGTTAGATTTACATACATTTGTGAATGTATGTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/481422‑481163 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGG  <  CP009273/1463497‑1463244

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.